FFCP PHASE1:Hg19::chr7:150945865..150945896,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:150945865..150945896,- to FFCP PHASE1:Hg19::chr7:150945865..150945896,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6604 | |EntrezGene=6604 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11108 | |HGNC=11108 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-94bp_to_ENST00000472988_5end | |||
|cluster_id=chr7:150945865..150945896,- | |||
|description=CAGE_peak_4_at_SMARCD3_5end | |||
|id=chr7:150945865..150945896,- | |||
|ontology_enrichment_celltype=CL:0000055!1.16e-21!180;CL:0000183!2.19e-16!59;CL:0000680!6.58e-16!57;CL:0000056!6.58e-16!57;CL:0000355!6.58e-16!57;CL:0000187!1.64e-15!54;CL:0000393!3.09e-14!60;CL:0000211!3.09e-14!60;CL:0000192!1.80e-13!42;CL:0000514!1.80e-13!42;CL:0000359!3.14e-11!32;CL:0000057!4.53e-07!75;CL:0000220!7.23e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0000359;7.58e-16;32!CL:0000192;3.68e-13;43!CL:0000187;1.63e-10;55!CL:0000393;4.34e-09;61!CL:0000211;4.34e-09;61!CL:0002594;3.75e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,3.40e-19,58;CL:0000056,3.40e-19,58;CL:0000355,3.40e-19,58;CL:0000187,1.11e-17,55;CL:0000359,5.17e-17,32;CL:0000192,2.22e-16,43;CL:0000514,2.22e-16,43;CL:0000393,2.63e-16,61;CL:0000211,2.63e-16,61;CL:0002594,4.21e-08,4 | |||
|ontology_enrichment_development_v019=CL:0000514;3.68e-13;43!CL:0000355;3.06e-11;58!UBERON:0005062;5.71e-07;4!UBERON:0007284;5.71e-07;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002385!6.68e-19!63;UBERON:0001015!6.68e-19!63;UBERON:0000383!6.68e-19!63;UBERON:0001134!1.31e-18!61;UBERON:0002036!1.31e-18!61;UBERON:0003082!1.31e-18!61;UBERON:0004290!5.20e-18!70;UBERON:0000914!1.51e-16!83;UBERON:0002329!1.51e-16!83;UBERON:0003077!1.51e-16!83;UBERON:0003059!1.51e-16!83;UBERON:0007282!1.51e-16!83;UBERON:0009618!1.51e-16!83;UBERON:0007285!1.51e-16!83;UBERON:0000486!3.54e-14!82;UBERON:0002100!2.24e-13!216;UBERON:0001637!7.71e-13!42;UBERON:0003509!7.71e-13!42;UBERON:0004572!7.71e-13!42;UBERON:0000490!9.91e-13!138;UBERON:0001981!3.48e-12!60;UBERON:0007500!3.48e-12!60;UBERON:0004537!3.48e-12!60;UBERON:0006965!3.48e-12!60;UBERON:0004872!3.74e-12!84;UBERON:0005256!1.01e-11!143;UBERON:0000481!8.15e-11!347;UBERON:0003914!1.31e-10!118;UBERON:0000475!1.84e-10!365;UBERON:0003104!3.67e-10!238;UBERON:0009142!3.67e-10!238;UBERON:0007100!6.25e-10!27;UBERON:0002049!2.06e-09!79;UBERON:0007798!2.06e-09!79;UBERON:0000055!2.07e-09!69;UBERON:0000119!2.46e-09!312;UBERON:0004573!3.73e-09!33;UBERON:0004571!3.73e-09!33;UBERON:0000483!6.17e-09!309;UBERON:0001009!1.03e-08!113;UBERON:0000468!1.89e-08!659;UBERON:0000948!5.20e-08!24;UBERON:0005498!5.20e-08!24;UBERON:0004140!5.20e-08!24;UBERON:0009881!5.20e-08!24;UBERON:0004141!5.20e-08!24;UBERON:0003084!5.20e-08!24;UBERON:0007005!5.20e-08!24;UBERON:0004139!5.20e-08!24;UBERON:0004291!5.20e-08!24;UBERON:0004535!1.49e-07!110;UBERON:0003103!9.84e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.11e-15;42!UBERON:0003509;1.11e-15;42!UBERON:0004572;1.11e-15;42!UBERON:0004573;3.56e-11;33!UBERON:0004571;3.56e-11;33!UBERON:0003688;4.55e-11;6!UBERON:0002358;4.55e-11;6!UBERON:0003684;4.55e-11;6!UBERON:0001178;4.55e-11;6!UBERON:0001134;2.81e-09;16!UBERON:0002036;2.81e-09;16!UBERON:0007100;3.14e-09;25!UBERON:0004457;3.65e-09;9!UBERON:0000042;3.65e-09;9!UBERON:0007500;8.78e-09;56!UBERON:0001981;8.78e-09;56!UBERON:0004537;8.78e-09;56!UBERON:0002385;1.63e-08;31!UBERON:0001015;1.63e-08;31!UBERON:0000383;1.63e-08;31!UBERON:0001310;3.75e-08;4!UBERON:0010313;3.88e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,2.83e-24,62;UBERON:0002036,2.83e-24,62;UBERON:0003082,2.83e-24,62;UBERON:0002385,3.59e-23,64;UBERON:0001015,3.59e-23,64;UBERON:0000383,3.59e-23,64;UBERON:0007524,5.29e-23,73;UBERON:0002329,1.62e-22,71;UBERON:0003059,1.62e-22,71;UBERON:0007282,1.62e-22,71;UBERON:0004290,1.62e-22,71;UBERON:0009618,1.62e-22,71;UBERON:0001637,3.11e-22,42;UBERON:0003509,3.11e-22,42;UBERON:0004572,3.11e-22,42;UBERON:0003077,4.81e-22,72;UBERON:0007285,4.81e-22,72;UBERON:0007503,1.78e-19,78;UBERON:0000486,7.43e-19,83;UBERON:0007500,1.70e-17,59;UBERON:0001981,1.70e-17,59;UBERON:0004537,1.70e-17,59;UBERON:0006965,1.70e-17,59;UBERON:0005256,2.98e-15,122;UBERON:0000055,3.05e-15,68;UBERON:0004872,4.62e-15,83;UBERON:0003104,1.47e-14,160;UBERON:0009142,1.47e-14,160;UBERON:0004573,1.13e-13,33;UBERON:0004571,1.13e-13,33;UBERON:0003914,2.24e-13,117;UBERON:0002049,3.31e-13,78;UBERON:0007798,3.31e-13,78;UBERON:0002100,3.64e-13,199;UBERON:0001009,4.69e-13,112;UBERON:0000490,2.02e-12,148;UBERON:0007100,4.01e-11,27;UBERON:0003688,5.86e-11,6;UBERON:0002358,5.86e-11,6;UBERON:0003684,5.86e-11,6;UBERON:0001178,5.86e-11,6;UBERON:0004535,8.67e-11,109;UBERON:0004797,1.78e-10,7;UBERON:0001310,4.21e-08,4;UBERON:0000948,1.09e-07,24;UBERON:0005498,1.09e-07,24;UBERON:0004140,1.09e-07,24;UBERON:0009881,1.09e-07,24;UBERON:0004141,1.09e-07,24;UBERON:0003084,1.09e-07,24;UBERON:0007005,1.09e-07,24;UBERON:0004139,1.09e-07,24;UBERON:0004291,1.09e-07,24;UBERON:0010313,5.39e-07,10;UBERON:0002342,5.39e-07,10;UBERON:0005062,5.39e-07,10;UBERON:0000483,7.01e-07,306 | |||
|phase1_expression=3.99692434395225,1.2846031433459,3.52386010239928,4.00293193412522,4.46961094427288,0.872338524100369,0,0.631719873426831,0,1.47440361900905,0,0,0,0,0,0.672325146451775,0,0,1.46379839637152,1.10808952269109,0.408001382488506,0.626909442956176,0,0.136874425072884,0.251085279189606,0,0,0,0,0,0.154816123316076,0,0.6024118375565,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0.309706370895104,0,0.512321413058201,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0.199463657621632,0.426224750532694,0,0.56738522469114,0,0,0,0.434377689410233,0,0,0,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,1.02290049474824,1.0843174571537,0,0.724232594804119,0,0,0.378139268656271,0.221729397462564,0.087834785693126,0.0654895377488563,0.364295288292542,0,0,0,0,0,0,0,0.39752481473341,0,0.347140501607594,0.56530794192401,1.25849830862972,0,1.25396979922086,0,0,0,0.402829317109147,0,0,0,0,0.267899184852239,0.44905874525234,0.450445921933289,0,0.949265659568129,0,0,0,0.436094052142534,2.98183171017191,2.15271869829786,1.58891016975863,1.14734648299525,1.06400514659507,2.24271040056923,0,1.72667283892012,0.622422070799533,0.404132016209064,0.817309515567294,0.908144565869588,0,0,0,1.1409436430889,0,0.117434498643765,0.485618833104395,0.421352420106746,0.204154171254893,0.122834317311768,0.103325781175765,0,0.247266929278557,0,2.15585442544872,0,0.625592599359821,0,0.438977620880838,0.612975591598039,0.751190294532984,1.24775401476023,0,0.213557388818567,0,1.20036438433761,0.515262646192195,0,0.930584281657949,0.506328996723799,0.487185025805993,1.00973509697646,0.644349290496095,0.161646056818812,0,0.906768884048762,1.3564847384839,0.193260853163297,0,0.286804595389004,0,0,0.232387885739037,0.10366105501537,0,0,0,0.643240938192885,1.38134921352481,0.464367928031979,0.721879481669586,0.236613600079688,0.337169380156203,0,0.110293972732394,0.653638332277218,0,0,0,0,0,0,1.6462960453256,1.47008711385542,0,0,0,0,0.368965315629341,0,0.439001141634502,0,0.100528972411631,0.0925884451585296,0.651616610620649,1.03993478527958,0,0.34779121492523,0.821860859650752,0,0,0.190254152234598,0,0,0,0,0,0,0.335964256397719,0.141775097242386,0,0,0,0,0,0,0.144119953416961,0,0.253991577168676,0.381988425558278,1.17217447210047,3.4214489204541,0.308482478109971,0.300343057843917,0,0.672786506072164,0.87192013766656,0.07333828582095,0.904902010304444,3.57656445851882,0.845302752556,1.32969058292435,1.04007436911366,1.28603687131071,0,0.799266537048298,0.428933980974443,0,0,0.325736184293735,1.06617584622764,0,0.301439377059586,0,0.899756920638513,0,0,0,0.718874566474748,1.14861935834114,2.85273810081437,1.59259437334337,0,1.79060963239896,0,0,0,0,0.254094624222463,2.60279707715243,0,1.17261385734044,0.637938751653163,0,0,0,0,1.50051156317903,0,1.03985430765404,0.713715955188647,0.630809660135739,0.585707074963566,0.902838299183157,0,1.03473071292505,0.664225598535437,2.02806085395873,0.434418072340414,1.17480694477644,1.71571711905428,0,0,0.106727557803444,0,0,0.30239029332968,1.24053903909388,0.920771839728375,1.12264037773229,3.45975702990393,4.60536524160033,1.12597744800525,7.42090332224955,0.462629081407967,0.710246901252508,0.410635780069046,0,0.581051892299796,0.725156697549733,0,0,0.918515585316854,0.728364672026868,0.655622074797121,0,0.15403067420883,0,0,0,0,0,0.431831832204279,0,0.812839312631559,0.501689773854853,0,0,0.223874754722178,0,0,0.256450125116389,3.28014645699706,0.650756789328606,0.103041011647722,0.732555718546747,0.082509499920588,0,0,0,1.7400729292582,0.462145851343933,0.307007349452259,1.10269257987624,0.214840489736547,0.725083469571143,0.93749290157711,3.02708921198907,0.165284915360978,0.192190067365106,0.127612712494584,0,3.71876439437829,0.31481234683064,0,1.23213432070436,6.38767236380426,0.869932992075073,2.03856641014312,3.57812216854978,0,1.89827654831236,0.571890581771475,1.27948895655667,0.42793898803392,2.22742273548156,3.13979456079692,0.539617372749944,1.09814811894422,0.824686816419805,5.86329196562617,3.17020642346017,0.842516912477962,0.48763373908959,0.487426979262569,1.05650146756755,0.818999468447914,1.1312434556297,2.26016233240486,1.65409603063837,3.98063385144732,1.31535265576129,1.15755106853338,0,5.2756698010303,2.16876448669825,4.22543403798362,0.286822704408103,0.0982490410131212,3.5667105148125,0.354761064070598,0,0.329294892959902,0.379473173765715,0,0.192444225451024,0.670302275535787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.534120355637366,1.92495971052672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,1.33496573924465,0,0.284136146806413,0.23874448473769,1.48482340416319,0,0,0,0.111308705022906,0,4.22250816255987,2.78947183551498,0.552567831062295,0,0.20453736500431,0,2.48831670129446,0.269605053441981,0,0,0.986434056369336,0,4.44547960578548,0,0.185536196323703,0,0,0.174919999992391,0,0,0.254253650292766,0.236387681767936,0,0,0,0,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| ||
|short_description=p4@SMARCD3 | |||
}} | }} |
Latest revision as of 06:12, 17 September 2015
Short description: | p4@SMARCD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SMARCD3_5end |
Coexpression cluster: | NA |
Association with transcript: | -94bp_to_ENST00000472988_5end |
EntrezGene: | SMARCD3 |
HGNC: | 11108 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 3.40e-19 | 58 |
myoblast | 3.40e-19 | 58 |
multi-potent skeletal muscle stem cell | 3.40e-19 | 58 |
muscle cell | 1.11e-17 | 55 |
vascular associated smooth muscle cell | 5.17e-17 | 32 |
smooth muscle cell | 2.22e-16 | 43 |
smooth muscle myoblast | 2.22e-16 | 43 |
electrically responsive cell | 2.63e-16 | 61 |
electrically active cell | 2.63e-16 | 61 |
smooth muscle cell of the umbilical artery | 4.21e-08 | 4 |