FFCP PHASE1:Hg19::chr17:71640554..71640561,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr17:71640554..71640561,-
|short_description=p3@SDK2
|description=CAGE_peak_3_at_SDK2_5end
|association_with_transcript=-327bp_to_ENST00000316893,ENST000003887...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54549 | |EntrezGene=54549 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19308 | |HGNC=19308 | ||
|TSSclassifier=strong | |||
|UniProt=C9JBW3,Q58EX2 | |UniProt=C9JBW3,Q58EX2 | ||
|association_with_transcript=-327bp_to_ENST00000316893,ENST00000388726,ENST00000392650,NM_001144952,uc010dfm.2_5end | |||
|cluster_id=chr17:71640554..71640561,- | |||
|description=CAGE_peak_3_at_SDK2_5end | |||
|id=chr17:71640554..71640561,- | |||
|ontology_enrichment_celltype=CL:0000039!5.25e-11!7;CL:0000586!5.25e-11!7;CL:0002076!1.19e-10!43;CL:0000622!2.35e-08!5;CL:0002368!5.46e-08!13;CL:0000223!5.04e-07!59;CL:0000154!7.81e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000039;5.36e-22;7!CL:0000586;5.36e-22;7!CL:0002032;2.79e-11;1!CL:0000557;2.79e-11;1!CL:0002252;8.61e-11;1!CL:0000622;1.20e-08;5!CL:0000154;2.41e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,3.03e-22,7;CL:0000586,3.03e-22,7;CL:0002252,9.97e-11,1;CL:0000622,1.54e-08,5;CL:0000154,2.96e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1799;8.61e-11;1!DOID:10165;8.61e-11;1!DOID:1798;8.61e-11;1!DOID:3095;1.05e-10;22!DOID:2994;1.05e-10;22 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,4.15e-11,1;DOID:10165,4.15e-11,1;DOID:1798,4.15e-11,1;DOID:3095,7.53e-11,22;DOID:2994,7.53e-11,22 | |||
|ontology_enrichment_uberon=UBERON:0002298!9.57e-07!8 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p3@SDK2 | |||
}} | }} |
Latest revision as of 06:21, 17 September 2015
Short description: | p3@SDK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SDK2_5end |
Coexpression cluster: | NA |
Association with transcript: | -327bp_to_ENST00000316893, ENST00000388726, ENST00000392650, NM_001144952, uc010dfm.2_5end |
EntrezGene: | SDK2 |
HGNC: | 19308 |
UniProt: | C9JBW3Q58EX2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 3.03e-22 | 7 |
germ cell | 3.03e-22 | 7 |
epithelial cell of esophagus | 9.97e-11 | 1 |
acinar cell | 1.54e-08 | 5 |
protein secreting cell | 2.96e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 4.15e-11 | 1 |
endocrine pancreas cancer | 4.15e-11 | 1 |
pancreatic endocrine carcinoma | 4.15e-11 | 1 |
germ cell and embryonal cancer | 7.53e-11 | 22 |
germ cell cancer | 7.53e-11 | 22 |