FFCP PHASE1:Hg19::chr20:61447559..61447570,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1299 | |EntrezGene=1299 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2219 | |HGNC=2219 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-25bp_to_ENST00000477612_5end | |association_with_transcript=-25bp_to_ENST00000477612_5end | ||
|cluster_id=chr20:61447559..61447570,+ | |||
|description=CAGE_peak_11_at_COL9A3_5end | |description=CAGE_peak_11_at_COL9A3_5end | ||
|id=chr20:61447559..61447570,+ | |id=chr20:61447559..61447570,+ | ||
Latest revision as of 11:37, 17 September 2015
| Short description: | p11@COL9A3 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_11_at_COL9A3_5end |
| Coexpression cluster: | NA |
| Association with transcript: | -25bp_to_ENST00000477612_5end |
| EntrezGene: | COL9A3 |
| HGNC: | 2219 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p11@COL9A3 |
|---|
0.0
0.5
1.0
1.5
2.0
2.5
3.0
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| embryonic stem cell | 6.67e-36 | 5 |
| germ line cell | 3.45e-26 | 7 |
| germ cell | 3.45e-26 | 7 |
| neuron | 3.97e-14 | 6 |
| neuroblast | 3.97e-14 | 6 |
| electrically signaling cell | 3.97e-14 | 6 |
| neuronal stem cell | 7.67e-11 | 8 |
Showing 1 to 7 of 7 entries
| Ontology term | p-value | n |
|---|---|---|
| islet cell tumor | 2.82e-21 | 1 |
| endocrine pancreas cancer | 2.82e-21 | 1 |
| pancreatic endocrine carcinoma | 2.82e-21 | 1 |
| germ cell and embryonal cancer | 6.43e-15 | 22 |
| germ cell cancer | 6.43e-15 | 22 |
Showing 1 to 5 of 5 entries
