FFCP PHASE1:Hg19::chr6:30103907..30103922,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=135644 | |EntrezGene=135644 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18736 | |HGNC=18736 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=6bp_to_ENST00000489892,uc003npl.1_5end | |association_with_transcript=6bp_to_ENST00000489892,uc003npl.1_5end | ||
|cluster_id=chr6:30103907..30103922,+ | |||
|coexpression_cluster_id=C34 | |coexpression_cluster_id=C34 | ||
|description=CAGE_peak_1_at_TRIM40_5end | |description=CAGE_peak_1_at_TRIM40_5end | ||
|id=chr6:30103907..30103922,+ | |id=chr6:30103907..30103922,+ | ||
|ontology_enrichment_celltype=CL:0000764!4.17e-07!2;CL:0000765!4.17e-07!2;CL:0000050!4.17e-07!2;CL:0000038!4.17e-07!2;CL:0000558!4.17e-07!2;CL:0000547!4.17e-07!2;CL:0000549!4.17e-07!2;CL:0000550!4.17e-07!2;CL:0000552!4.17e-07!2 | |ontology_enrichment_celltype=CL:0000764!4.17e-07!2;CL:0000765!4.17e-07!2;CL:0000050!4.17e-07!2;CL:0000038!4.17e-07!2;CL:0000558!4.17e-07!2;CL:0000547!4.17e-07!2;CL:0000549!4.17e-07!2;CL:0000550!4.17e-07!2;CL:0000552!4.17e-07!2 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003124;2.16e-26;1!UBERON:0001045;1.11e-25;1 | |||
|ontology_enrichment_disease=DOID:3493!4.69e-07!2 | |ontology_enrichment_disease=DOID:3493!4.69e-07!2 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!2.40e-15!35;UBERON:0000160!8.71e-15!27;UBERON:0001154!3.33e-13!1;UBERON:0001153!3.33e-13!1;UBERON:0007029!4.77e-13!1;UBERON:0004907!2.35e-10!5;UBERON:0000059!4.16e-10!11;UBERON:0004921!9.93e-08!129;UBERON:0004185!9.93e-08!129;UBERON:0002108!9.94e-08!14;UBERON:0004119!6.82e-07!169;UBERON:0000925!6.82e-07!169;UBERON:0006595!6.82e-07!169 | |ontology_enrichment_uberon=UBERON:0005409!2.40e-15!35;UBERON:0000160!8.71e-15!27;UBERON:0001154!3.33e-13!1;UBERON:0001153!3.33e-13!1;UBERON:0007029!4.77e-13!1;UBERON:0004907!2.35e-10!5;UBERON:0000059!4.16e-10!11;UBERON:0004921!9.93e-08!129;UBERON:0004185!9.93e-08!129;UBERON:0002108!9.94e-08!14;UBERON:0004119!6.82e-07!169;UBERON:0000925!6.82e-07!169;UBERON:0006595!6.82e-07!169 | ||
|ontology_enrichment_uberon_v019=UBERON:0002108;7.36e-45;4!UBERON:0001154;1.11e-25;1!UBERON:0001153;1.11e-25;1!UBERON:0009854;1.11e-25;1!UBERON:0000160;2.61e-22;17!UBERON:0005409;1.39e-17;22!UBERON:0004921;1.87e-10;33!UBERON:0002114;1.74e-09;2!UBERON:0001987;1.31e-07;4!UBERON:0009856;1.98e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002108,8.55e-45,4;UBERON:0001154,9.79e-26,1;UBERON:0001153,9.79e-26,1;UBERON:0001045,9.79e-26,1;UBERON:0000160,2.68e-22,17;UBERON:0005409,1.31e-15,25;UBERON:0002114,1.81e-09,2;UBERON:0001987,1.31e-07,4;UBERON:0004340,1.31e-07,4 | |||
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|short_description=p1@TRIM40 | |short_description=p1@TRIM40 | ||
}} | }} |
Latest revision as of 15:39, 17 September 2015
Short description: | p1@TRIM40 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRIM40_5end |
Coexpression cluster: | C34_placenta_chorionic_choriocarcinoma_mesothelioma_Wilms_Smooth_bile |
Association with transcript: | 6bp_to_ENST00000489892, uc003npl.1_5end |
EntrezGene: | TRIM40 |
HGNC: | 18736 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
small intestine | 8.55e-45 | 4 |
vermiform appendix | 9.79e-26 | 1 |
caecum | 9.79e-26 | 1 |
midgut | 9.79e-26 | 1 |
intestine | 2.68e-22 | 17 |
gastrointestinal system | 1.31e-15 | 25 |
duodenum | 1.81e-09 | 2 |
placenta | 1.31e-07 | 4 |
allantois | 1.31e-07 | 4 |