FFCP PHASE1:Hg19::chr19:39303576..39303591,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3960 | |EntrezGene=3960 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6565 | |HGNC=6565 | ||
|TSSclassifier=strong | |||
|UniProt=P56470,Q6FHZ4 | |UniProt=P56470,Q6FHZ4 | ||
|association_with_transcript=148bp_to_ENST00000307751,NM_006149,uc002ojg.2,uc010xuj.1_5end | |association_with_transcript=148bp_to_ENST00000307751,NM_006149,uc002ojg.2,uc010xuj.1_5end | ||
|cluster_id=chr19:39303576..39303591,- | |||
|coexpression_cluster_id=C201 | |||
|description=CAGE_peak_1_at_LGALS4_5end | |description=CAGE_peak_1_at_LGALS4_5end | ||
|id=chr19:39303576..39303591,- | |id=chr19:39303576..39303591,- | ||
|ontology_enrichment_celltype=CL:0002322!1.47e-09!5 | |ontology_enrichment_celltype=CL:0002322!1.47e-09!5 | ||
|ontology_enrichment_celltype_v019=CL:0002178;3.37e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002178,3.37e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0004161;7.59e-07;11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3493;1.68e-10;2!DOID:4929;3.86e-10;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,1.68e-10,2;DOID:4929,3.86e-10,2 | |||
|ontology_enrichment_uberon=UBERON:0004921!1.82e-17!129;UBERON:0004185!1.82e-17!129;UBERON:0005409!1.50e-16!35;UBERON:0001007!1.88e-16!155;UBERON:0001555!1.88e-16!155;UBERON:0007026!1.88e-16!155;UBERON:0007023!4.91e-15!115;UBERON:0004119!5.16e-15!169;UBERON:0000925!5.16e-15!169;UBERON:0006595!5.16e-15!169;UBERON:0000160!2.33e-13!27;UBERON:0000077!7.57e-12!130;UBERON:0003929!1.24e-09!54;UBERON:0000059!1.24e-09!11;UBERON:0005911!1.31e-09!82;UBERON:0003135!1.06e-08!11;UBERON:0005177!2.69e-08!107;UBERON:0000062!7.32e-08!511;UBERON:0003101!1.37e-07!22;UBERON:0000079!1.37e-07!22;UBERON:0000481!1.54e-07!347;UBERON:0001046!1.66e-07!19;UBERON:0000466!1.99e-07!126;UBERON:0000922!2.12e-07!612;UBERON:0004907!2.51e-07!5;UBERON:0001041!2.51e-07!98;UBERON:0009497!2.58e-07!25;UBERON:0000015!2.58e-07!25;UBERON:0002423!2.58e-07!25;UBERON:0006235!2.58e-07!25;UBERON:0004161!2.58e-07!25;UBERON:0006947!4.44e-07!3;UBERON:0004054!4.44e-07!3;UBERON:0003104!5.22e-07!238;UBERON:0009142!5.22e-07!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;6.43e-32;22!UBERON:0000160;1.70e-24;17!UBERON:0004921;6.08e-22;33!UBERON:0002108;2.35e-15;4!UBERON:0000059;8.44e-11;11!UBERON:0002423;1.84e-10;25!UBERON:0001007;3.01e-09;81!UBERON:0000945;5.26e-09;5!UBERON:0010039;5.26e-09;5!UBERON:0001155;8.01e-09;9!UBERON:0002107;4.41e-08;19!UBERON:0006925;4.41e-08;19!UBERON:0001555;1.06e-07;54!UBERON:0002114;4.85e-07;2!UBERON:0000922;9.44e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,6.80e-28,25;UBERON:0000160,1.71e-24,17;UBERON:0004921,3.52e-18,118;UBERON:0001007,1.51e-16,145;UBERON:0001555,1.51e-16,145;UBERON:0007026,1.51e-16,145;UBERON:0004119,1.01e-15,160;UBERON:0000925,1.01e-15,160;UBERON:0006595,1.01e-15,160;UBERON:0002108,2.35e-15,4;UBERON:0009854,1.92e-11,23;UBERON:0000059,8.44e-11,11;UBERON:0009497,1.84e-10,25;UBERON:0000015,1.84e-10,25;UBERON:0002423,1.84e-10,25;UBERON:0006235,1.84e-10,25;UBERON:0004161,1.84e-10,25;UBERON:0009856,5.63e-10,26;UBERON:0008835,3.34e-09,22;UBERON:0003894,3.34e-09,22;UBERON:0001155,8.01e-09,9;UBERON:0011216,1.74e-08,223;UBERON:0002107,4.41e-08,19;UBERON:0006925,4.41e-08,19;UBERON:0008836,4.41e-08,19;UBERON:0007499,5.52e-08,25;UBERON:0003929,6.76e-08,54;UBERON:0005177,1.01e-07,101;UBERON:0005911,1.37e-07,82;UBERON:0007023,1.72e-07,114;UBERON:0001041,4.32e-07,87;UBERON:0002114,4.86e-07,2 | |||
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| ||
|short_description=p1@LGALS4 | |short_description=p1@LGALS4 | ||
}} | }} |
Latest revision as of 20:29, 17 September 2015
Short description: | p1@LGALS4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LGALS4_5end |
Coexpression cluster: | C201_colon_small_adenocarcinoma_duodenum_temporal_signet_gall |
Association with transcript: | 148bp_to_ENST00000307751, NM_006149, uc002ojg.2, uc010xuj.1_5end |
EntrezGene: | LGALS4 |
HGNC: | 6565 |
UniProt: | P56470Q6FHZ4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 3.37e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 6.80e-28 | 25 |
intestine | 1.71e-24 | 17 |
subdivision of digestive tract | 3.52e-18 | 118 |
digestive system | 1.51e-16 | 145 |
digestive tract | 1.51e-16 | 145 |
primitive gut | 1.51e-16 | 145 |
endoderm-derived structure | 1.01e-15 | 160 |
endoderm | 1.01e-15 | 160 |
presumptive endoderm | 1.01e-15 | 160 |
small intestine | 2.35e-15 | 4 |
digestive tract diverticulum | 1.92e-11 | 23 |
large intestine | 8.44e-11 | 11 |
epithelium of foregut-midgut junction | 1.84e-10 | 25 |
anatomical boundary | 1.84e-10 | 25 |
hepatobiliary system | 1.84e-10 | 25 |
foregut-midgut junction | 1.84e-10 | 25 |
septum transversum | 1.84e-10 | 25 |
sac | 5.63e-10 | 26 |
hepatic diverticulum | 3.34e-09 | 22 |
liver primordium | 3.34e-09 | 22 |
colon | 8.01e-09 | 9 |
organ system subdivision | 1.74e-08 | 223 |
liver | 4.41e-08 | 19 |
digestive gland | 4.41e-08 | 19 |
liver bud | 4.41e-08 | 19 |
epithelial sac | 5.52e-08 | 25 |
gut epithelium | 6.76e-08 | 54 |
trunk region element | 1.01e-07 | 101 |
endo-epithelium | 1.37e-07 | 82 |
adult organism | 1.72e-07 | 114 |
foregut | 4.32e-07 | 87 |
duodenum | 4.86e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 1.68e-10 | 2 |
tubular adenocarcinoma | 3.86e-10 | 2 |