FFCP PHASE1:Hg19::chr4:48018648..48018676,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1259 | |EntrezGene=1259 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2148 | |HGNC=2148 | ||
|TSSclassifier=strong | |||
|UniProt=D6R978 | |UniProt=D6R978 | ||
|association_with_transcript=12bp_to_ENST00000513178_5end | |association_with_transcript=12bp_to_ENST00000513178_5end | ||
|cluster_id=chr4:48018648..48018676,- | |||
|coexpression_cluster_id=C4420 | |coexpression_cluster_id=C4420 | ||
|description=CAGE_peak_1_at_CNGA1_5end | |description=CAGE_peak_1_at_CNGA1_5end | ||
|id=chr4:48018648..48018676,- | |id=chr4:48018648..48018676,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002322;7.87e-11;5!CL:1000306;5.96e-09;4!CL:0002547;5.96e-09;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.35e-10,5;CL:1000306,3.30e-09,4;CL:0002547,3.30e-09,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000922!1.38e-11!612;UBERON:0004119!9.86e-11!169;UBERON:0000925!9.86e-11!169;UBERON:0006595!9.86e-11!169;UBERON:0000062!1.70e-09!511;UBERON:0000468!4.15e-09!659;UBERON:0002050!5.73e-09!605;UBERON:0005423!5.73e-09!605;UBERON:0004921!6.37e-09!129;UBERON:0004185!6.37e-09!129;UBERON:0001007!6.68e-09!155;UBERON:0001555!6.68e-09!155;UBERON:0007026!6.68e-09!155;UBERON:0000923!1.10e-08!604;UBERON:0005291!1.10e-08!604;UBERON:0006598!1.10e-08!604;UBERON:0002532!1.10e-08!604;UBERON:0004111!4.53e-08!241;UBERON:0000466!7.27e-08!126;UBERON:0007023!7.80e-08!115;UBERON:0000481!1.54e-07!347;UBERON:0000467!2.70e-07!625;UBERON:0000480!3.47e-07!626;UBERON:0001008!5.19e-07!45;UBERON:0003064!7.99e-07!37 | |ontology_enrichment_uberon=UBERON:0000922!1.38e-11!612;UBERON:0004119!9.86e-11!169;UBERON:0000925!9.86e-11!169;UBERON:0006595!9.86e-11!169;UBERON:0000062!1.70e-09!511;UBERON:0000468!4.15e-09!659;UBERON:0002050!5.73e-09!605;UBERON:0005423!5.73e-09!605;UBERON:0004921!6.37e-09!129;UBERON:0004185!6.37e-09!129;UBERON:0001007!6.68e-09!155;UBERON:0001555!6.68e-09!155;UBERON:0007026!6.68e-09!155;UBERON:0000923!1.10e-08!604;UBERON:0005291!1.10e-08!604;UBERON:0006598!1.10e-08!604;UBERON:0002532!1.10e-08!604;UBERON:0004111!4.53e-08!241;UBERON:0000466!7.27e-08!126;UBERON:0007023!7.80e-08!115;UBERON:0000481!1.54e-07!347;UBERON:0000467!2.70e-07!625;UBERON:0000480!3.47e-07!626;UBERON:0001008!5.19e-07!45;UBERON:0003064!7.99e-07!37 | ||
|ontology_enrichment_uberon_v019=UBERON:0000160;3.50e-12;17!UBERON:0004921;3.97e-12;33!UBERON:0005409;5.68e-09;22!UBERON:0004797;5.96e-09;4!UBERON:0000415;5.96e-09;4!UBERON:0007240;5.96e-09;4!UBERON:0005742;5.96e-09;4!UBERON:0005734;5.96e-09;4!UBERON:0004664;5.96e-09;4!UBERON:0004663;5.96e-09;4!UBERON:0002108;6.79e-07;4!UBERON:0000059;8.50e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004921,1.55e-12,118;UBERON:0000160,3.54e-12,17;UBERON:0001007,6.96e-10,145;UBERON:0001555,6.96e-10,145;UBERON:0007026,6.96e-10,145;UBERON:0004119,1.78e-09,160;UBERON:0000925,1.78e-09,160;UBERON:0006595,1.78e-09,160;UBERON:0000415,3.30e-09,4;UBERON:0007240,3.30e-09,4;UBERON:0005742,3.30e-09,4;UBERON:0005734,3.30e-09,4;UBERON:0004664,3.30e-09,4;UBERON:0004663,3.30e-09,4;UBERON:0005409,1.20e-07,25;UBERON:0000922,1.46e-07,592;UBERON:0001046,1.52e-07,19;UBERON:0001008,3.03e-07,48;UBERON:0002108,7.22e-07,4;UBERON:0000059,8.74e-07,11;UBERON:0000161,9.69e-07,36 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.822335776043652,0,0.28769239232215,0.256160706529101,0,0.344745680736619,0.645484683583826,0,0.376484679085209,0.272906150057846,0,0.306083892370903,0.641858054152187,0.639337125799041,0,0.398927315243264,0,0,0,0,1.50749199154046,1.0429658368404,0,0,0.368277635987565,0,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0.661044872784862,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0,0,0.486634870302636,0.189069634328136,0.443458794925128,0.087834785693126,0.261958150995425,1.82147644146271,0.370784442784429,0.649094787309367,0.696518949197069,0.797747763113191,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0.402829317109147,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,2.78587125662075,1.98613771219828,6.02356903572509,2.4826786753885,1.68203280042692,0,0.24666754841716,0,0.134710672069688,0,0,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0.718618141816238,0,0,0,0,0,0,1.47461838108027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169560592310488,0,1.09098448236334,0,3.65921118388786,2.38553582978673,2.20768491452085,1.14027160516907,3.02785021050754,1.09493207722749,0,0,0,0,0,0,0,0.241011029883482,0,0,0,0,0.196221465125346,0,0,0,0,0,11.4079531339648,3.9313088667105,8.86184860022106,0,1.47586126251736,0.343135620597051,0.768251997860379,0,0.201057944823262,0.555530670951178,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0.468008530278475,0,0,0.503946384596579,0.283550194484773,0.0895585227028483,0,0,0.985326475791887,0.616339038092582,0,0.144119953416961,0,0,0,0,0,0.102827492703324,0,0,0.224262168690721,0,0,0.517086863031111,0,0,0.797814349754612,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.699810938274399,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0.234282829985426,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,0.483437798366489,0.40101294060657,2.4861867012692,0,0,0,1.35359883872224,0.770153371044148,3.13739907670742,1.46139224653261,0.949964660035881,0,0,0.215915916102139,0,1.08378575017541,2.00675909541941,0.254876273045038,1.66215201785745,0.895499018888713,0,0,0,0.328014645699706,0,9.17065003664728,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,0.495854746082934,0.768760269460425,0.382838137483752,0.2023155617111,0,0,0,2.46426864140871,0.532306030317022,0,0.37064843820784,2.43312307461385,0,0,0,0,0,0,0,0,0.274537029736055,0,0.202182481573316,0,1.26377536871694,0,1.70599442741899,0,0.136499911407986,0,0,0,3.98063385144732,0.438450885253763,0,0,2.23201414658974,0.6196469961995,0.281695602532241,0.143411352204052,0.196498082026242,2.85336841185,0,0,0,0,0,0.288666338176536,0.670302275535787,0,8.75537347224046,0.43050537267123,0,0.886860307073351,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0.293016358543788,0,0,0,1.19372242368845,5.64232893582013,4.91457123358771,0,0,0.111308705022906,0,0,0.19924798825107,1.10513566212459,1.25966373927138,0.511343412510774,0,0,2.87578723671446,0,0,2.66337195219721,0,0,0,0,0,0,0.0874599999961957,0.724999575434793,0.682760689712998,0.508507300585533,0,0,0.291604613383254,0,0,0,0,0,0.295547618953547,0.219385397153973,0,0.83654246567162,2.77020930613669,0.113942055847001,0,0,0.760531603454056,0.638002319463839,0,0,0,0,0,0,0,0,0.189753732724185,0,0,0.163232808159148,0.848118428603645,0,3.98104772431402,3.18447232212021,15.8867837682743,0,0,0,0.202203398942031,0.802577647298789,0.234264445725339,0,2.15231080825299,0,1.57833761139756,3.62972148145992,0,0,0,0.414752765588989,0,0,0.313932918407225,0,0.853828638089378,0,1.04135843001079,2.84177952501695,1.30588809870604,4.89234671077684,2.57979048707425,0.0967563312890851,0.0730893170861856,0.0821154570532092,6.11030803877042,0,2.25980740780532,0,0,0.0633107959558787,0.977756913674015,0.0801588202515337,1.06726497369676,0.799238438328521,0.144090417154106,0,0,0.288109595976299,0.372757606696298,0.942776138467182,0,0,0,0.288950589901519,0,0.136905378891993,0,0,0,0.279282401272254,0.229160424011684,0,1.19807400299395,0.429226048136571,0.223171457441873,0.671834724867263,0,0,0.472699093843342,0.494495150286999,0.337017719270924,0.78741985211799,0.169346664131569,0,0,0.964518890790115,0.962776056180637,1.66176135211674,0,0.77380195455795,0.121499113316049,0,2.28536551167675,2.15063811353492,0.105600336519406,0.179287339332845,5.18171032762502,0,0,0,0,0,0,0,0,0.170388021785422,0.79318464064088,10.9914175258562,10.6005511129777,0,0,0,8.45778026780006,0.320362237703084,0.157204305099666,0,0,0,0,0.638341257770182,1.08803560673895,0.2506898940227,0.306345576763462,0.327872630709804,0,0,0.122026264901963,0.1251909307065,0.573409195690071,0.110929051536852,0.124192805882767,0.138348634936231,0.124980407962107,0.303298235083296,0,0.47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| ||
|short_description=p1@CNGA1 | |short_description=p1@CNGA1 | ||
}} | }} |
Latest revision as of 22:21, 17 September 2015
Short description: | p1@CNGA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CNGA1_5end |
Coexpression cluster: | C4420_colon_Hepatocyte_placenta_mesothelioma_liver_lung_amniotic |
Association with transcript: | 12bp_to_ENST00000513178_5end |
EntrezGene: | CNGA1 |
HGNC: | 2148 |
UniProt: | D6R978 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.35e-10 | 5 |
fibroblast of tunica adventitia of artery | 3.30e-09 | 4 |
fibroblast of the aortic adventitia | 3.30e-09 | 4 |
Ontology term | p-value | n |
---|---|---|
subdivision of digestive tract | 1.55e-12 | 118 |
intestine | 3.54e-12 | 17 |
digestive system | 6.96e-10 | 145 |
digestive tract | 6.96e-10 | 145 |
primitive gut | 6.96e-10 | 145 |
endoderm-derived structure | 1.78e-09 | 160 |
endoderm | 1.78e-09 | 160 |
presumptive endoderm | 1.78e-09 | 160 |
artery wall | 3.30e-09 | 4 |
tunica adventitia of artery | 3.30e-09 | 4 |
adventitia | 3.30e-09 | 4 |
tunica adventitia of blood vessel | 3.30e-09 | 4 |
aorta tunica adventitia | 3.30e-09 | 4 |
aorta wall | 3.30e-09 | 4 |
gastrointestinal system | 1.20e-07 | 25 |
embryo | 1.46e-07 | 592 |
hindgut | 1.52e-07 | 19 |
renal system | 3.03e-07 | 48 |
small intestine | 7.22e-07 | 4 |
large intestine | 8.74e-07 | 11 |
orifice | 9.69e-07 | 36 |