FFCP PHASE2:Hg19::chr2:175629357..175629367,-: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:1134 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:1955 |TSSclass...") |
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| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=1134 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=1955 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=P02708,Q53SH4 | ||
|association_with_transcript=-157bp_to_ENST00000348749,NM_000079,NM_001039523,uc002ujd.2,uc002uje.2,uc002ujf.3_5end | |association_with_transcript=-157bp_to_ENST00000348749,NM_000079,NM_001039523,uc002ujd.2,uc002uje.2,uc002ujf.3_5end | ||
|cluster_id=chr2:175629357..175629367,- | |cluster_id=chr2:175629357..175629367,- | ||
Latest revision as of 07:46, 18 September 2015
| Short description: | p6@CHRNA1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_6_at_CHRNA1_5end |
| Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
| Association with transcript: | -157bp_to_ENST00000348749, NM_000079, NM_001039523, uc002ujd.2, uc002uje.2, uc002ujf.3_5end |
| EntrezGene: | CHRNA1 |
| HGNC: | 1955 |
| UniProt: | P02708Q53SH4 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p6@CHRNA1 |
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| chondroblast | 4.27e-34 | 6 |
| chondrocyte | 4.27e-34 | 6 |
| GAG secreting cell | 2.62e-23 | 9 |
| carbohydrate secreting cell | 2.62e-23 | 9 |
| extracellular matrix secreting cell | 1.22e-14 | 15 |
| stromal cell | 1.52e-08 | 28 |
| secretory cell | 5.81e-07 | 36 |
Showing 1 to 7 of 7 entries
| Ontology term | p-value | n |
|---|---|---|
| cartilage tissue | 2.39e-66 | 3 |
| skeletal tissue | 2.39e-66 | 3 |
Showing 1 to 2 of 2 entries
| Ontology term | p-value | n |
|---|---|---|
| chondrosarcoma | 5.42e-195 | 1 |
| extraosseous chondrosarcoma | 5.42e-195 | 1 |
| myxoid chondrosarcoma | 5.42e-195 | 1 |
| extraskeletal myxoid chondrosarcoma | 5.42e-195 | 1 |
| connective tissue cancer | 4.27e-34 | 6 |
| musculoskeletal system cancer | 4.27e-34 | 6 |
| sarcoma | 2.29e-11 | 20 |
Showing 1 to 7 of 7 entries
