FFCP PHASE1:Hg19::chr15:63349224..63349289,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr15:63349224..63349289,+
|short_description=p5@TPM1
|description=CAGE_peak_5_at_TPM1_5end
|association_with_transcript=164bp_to_ENST00000558400_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7168 | |EntrezGene=7168 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12010 | |HGNC=12010 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=164bp_to_ENST00000558400_5end | |||
|cluster_id=chr15:63349224..63349289,+ | |||
|coexpression_cluster_id=C1041 | |||
|description=CAGE_peak_5_at_TPM1_5end | |||
|id=chr15:63349224..63349289,+ | |||
|ontology_enrichment_celltype=CL:0000055!6.27e-15!180;CL:0000222!3.99e-09!119;CL:0000359!1.23e-08!32;CL:0000192!1.73e-08!42;CL:0000514!1.73e-08!42;CL:0000680!4.55e-08!57;CL:0000056!4.55e-08!57;CL:0000355!4.55e-08!57;CL:0000187!1.65e-07!54;CL:0000183!1.72e-07!59;CL:0000393!4.58e-07!60;CL:0000211!4.58e-07!60;CL:0000057!5.41e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0000359;3.09e-09;32!CL:0000192;5.49e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,9.00e-10,43;CL:0000514,9.00e-10,43;CL:0000359,1.12e-09,32;CL:0000680,4.54e-08,58;CL:0000056,4.54e-08,58;CL:0000355,4.54e-08,58;CL:0000187,1.97e-07,55;CL:0000222,2.03e-07,121;CL:0000393,8.20e-07,61;CL:0000211,8.20e-07,61 | |||
|ontology_enrichment_development_v019=CL:0000514;5.49e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!5.08e-12!365;UBERON:0000481!6.04e-11!347;UBERON:0000468!9.16e-11!659;UBERON:0002385!2.20e-10!63;UBERON:0001015!2.20e-10!63;UBERON:0000383!2.20e-10!63;UBERON:0000914!6.89e-10!83;UBERON:0002329!6.89e-10!83;UBERON:0003077!6.89e-10!83;UBERON:0003059!6.89e-10!83;UBERON:0007282!6.89e-10!83;UBERON:0009618!6.89e-10!83;UBERON:0007285!6.89e-10!83;UBERON:0001134!9.49e-10!61;UBERON:0002036!9.49e-10!61;UBERON:0003082!9.49e-10!61;UBERON:0004872!3.05e-09!84;UBERON:0004290!5.68e-09!70;UBERON:0005256!6.83e-09!143;UBERON:0003103!1.04e-08!69;UBERON:0000486!1.23e-08!82;UBERON:0002049!1.36e-08!79;UBERON:0007798!1.36e-08!79;UBERON:0001637!1.48e-08!42;UBERON:0003509!1.48e-08!42;UBERON:0004572!1.48e-08!42;UBERON:0002100!2.80e-08!216;UBERON:0007100!4.03e-08!27;UBERON:0003914!5.04e-08!118;UBERON:0000483!6.76e-08!309;UBERON:0000119!7.94e-08!312;UBERON:0001009!8.85e-08!113;UBERON:0001981!1.46e-07!60;UBERON:0007500!1.46e-07!60;UBERON:0004537!1.46e-07!60;UBERON:0006965!1.46e-07!60;UBERON:0000467!1.75e-07!625;UBERON:0000477!1.84e-07!286;UBERON:0000480!2.73e-07!626;UBERON:0004573!5.57e-07!33;UBERON:0004571!5.57e-07!33;UBERON:0000055!6.20e-07!69;UBERON:0004535!9.89e-07!110 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;3.99e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002385,1.13e-10,64;UBERON:0001015,1.13e-10,64;UBERON:0000383,1.13e-10,64;UBERON:0001134,5.98e-10,62;UBERON:0002036,5.98e-10,62;UBERON:0003082,5.98e-10,62;UBERON:0007524,4.64e-09,73;UBERON:0007503,8.70e-09,78;UBERON:0003077,1.21e-08,72;UBERON:0007285,1.21e-08,72;UBERON:0002329,1.28e-08,71;UBERON:0003059,1.28e-08,71;UBERON:0007282,1.28e-08,71;UBERON:0004290,1.28e-08,71;UBERON:0009618,1.28e-08,71;UBERON:0001637,5.15e-08,42;UBERON:0003509,5.15e-08,42;UBERON:0004572,5.15e-08,42;UBERON:0000486,7.02e-08,83;UBERON:0007100,1.76e-07,27;UBERON:0003103,2.13e-07,68;UBERON:0004573,6.23e-07,33;UBERON:0004571,6.23e-07,33 | |||
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| ||
|short_description=p5@TPM1 | |||
}} | }} |
Latest revision as of 11:38, 18 September 2015
Short description: | p5@TPM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_TPM1_5end |
Coexpression cluster: | C1041_heart_hepatic_left_mesodermal_smooth_spindle_skeletal |
Association with transcript: | 164bp_to_ENST00000558400_5end |
EntrezGene: | TPM1 |
HGNC: | 12010 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 9.00e-10 | 43 |
smooth muscle myoblast | 9.00e-10 | 43 |
vascular associated smooth muscle cell | 1.12e-09 | 32 |
muscle precursor cell | 4.54e-08 | 58 |
myoblast | 4.54e-08 | 58 |
multi-potent skeletal muscle stem cell | 4.54e-08 | 58 |
muscle cell | 1.97e-07 | 55 |
mesodermal cell | 2.03e-07 | 121 |
electrically responsive cell | 8.20e-07 | 61 |
electrically active cell | 8.20e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
muscle tissue | 1.13e-10 | 64 |
musculature | 1.13e-10 | 64 |
musculature of body | 1.13e-10 | 64 |
skeletal muscle tissue | 5.98e-10 | 62 |
striated muscle tissue | 5.98e-10 | 62 |
myotome | 5.98e-10 | 62 |
dense mesenchyme tissue | 4.64e-09 | 73 |
epithelial vesicle | 8.70e-09 | 78 |
paraxial mesoderm | 1.21e-08 | 72 |
presumptive paraxial mesoderm | 1.21e-08 | 72 |
somite | 1.28e-08 | 71 |
presomitic mesoderm | 1.28e-08 | 71 |
presumptive segmental plate | 1.28e-08 | 71 |
dermomyotome | 1.28e-08 | 71 |
trunk paraxial mesoderm | 1.28e-08 | 71 |
artery | 5.15e-08 | 42 |
arterial blood vessel | 5.15e-08 | 42 |
arterial system | 5.15e-08 | 42 |
multilaminar epithelium | 7.02e-08 | 83 |
primary circulatory organ | 1.76e-07 | 27 |
compound organ | 2.13e-07 | 68 |
systemic artery | 6.23e-07 | 33 |
systemic arterial system | 6.23e-07 | 33 |