FFCP PHASE1:Hg19::chr15:63349224..63349289,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7168 | |EntrezGene=7168 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12010 | |HGNC=12010 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=164bp_to_ENST00000558400_5end | |association_with_transcript=164bp_to_ENST00000558400_5end | ||
|cluster_id=chr15:63349224..63349289,+ | |||
|coexpression_cluster_id=C1041 | |coexpression_cluster_id=C1041 | ||
|description=CAGE_peak_5_at_TPM1_5end | |description=CAGE_peak_5_at_TPM1_5end | ||
|id=chr15:63349224..63349289,+ | |id=chr15:63349224..63349289,+ | ||
|ontology_enrichment_celltype=CL:0000055!6.27e-15!180;CL:0000222!3.99e-09!119;CL:0000359!1.23e-08!32;CL:0000192!1.73e-08!42;CL:0000514!1.73e-08!42;CL:0000680!4.55e-08!57;CL:0000056!4.55e-08!57;CL:0000355!4.55e-08!57;CL:0000187!1.65e-07!54;CL:0000183!1.72e-07!59;CL:0000393!4.58e-07!60;CL:0000211!4.58e-07!60;CL:0000057!5.41e-07!75 | |ontology_enrichment_celltype=CL:0000055!6.27e-15!180;CL:0000222!3.99e-09!119;CL:0000359!1.23e-08!32;CL:0000192!1.73e-08!42;CL:0000514!1.73e-08!42;CL:0000680!4.55e-08!57;CL:0000056!4.55e-08!57;CL:0000355!4.55e-08!57;CL:0000187!1.65e-07!54;CL:0000183!1.72e-07!59;CL:0000393!4.58e-07!60;CL:0000211!4.58e-07!60;CL:0000057!5.41e-07!75 | ||
|ontology_enrichment_celltype_v019=CL:0000359;3.09e-09;32!CL:0000192;5.49e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,9.00e-10,43;CL:0000514,9.00e-10,43;CL:0000359,1.12e-09,32;CL:0000680,4.54e-08,58;CL:0000056,4.54e-08,58;CL:0000355,4.54e-08,58;CL:0000187,1.97e-07,55;CL:0000222,2.03e-07,121;CL:0000393,8.20e-07,61;CL:0000211,8.20e-07,61 | |||
|ontology_enrichment_development_v019=CL:0000514;5.49e-07;43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!5.08e-12!365;UBERON:0000481!6.04e-11!347;UBERON:0000468!9.16e-11!659;UBERON:0002385!2.20e-10!63;UBERON:0001015!2.20e-10!63;UBERON:0000383!2.20e-10!63;UBERON:0000914!6.89e-10!83;UBERON:0002329!6.89e-10!83;UBERON:0003077!6.89e-10!83;UBERON:0003059!6.89e-10!83;UBERON:0007282!6.89e-10!83;UBERON:0009618!6.89e-10!83;UBERON:0007285!6.89e-10!83;UBERON:0001134!9.49e-10!61;UBERON:0002036!9.49e-10!61;UBERON:0003082!9.49e-10!61;UBERON:0004872!3.05e-09!84;UBERON:0004290!5.68e-09!70;UBERON:0005256!6.83e-09!143;UBERON:0003103!1.04e-08!69;UBERON:0000486!1.23e-08!82;UBERON:0002049!1.36e-08!79;UBERON:0007798!1.36e-08!79;UBERON:0001637!1.48e-08!42;UBERON:0003509!1.48e-08!42;UBERON:0004572!1.48e-08!42;UBERON:0002100!2.80e-08!216;UBERON:0007100!4.03e-08!27;UBERON:0003914!5.04e-08!118;UBERON:0000483!6.76e-08!309;UBERON:0000119!7.94e-08!312;UBERON:0001009!8.85e-08!113;UBERON:0001981!1.46e-07!60;UBERON:0007500!1.46e-07!60;UBERON:0004537!1.46e-07!60;UBERON:0006965!1.46e-07!60;UBERON:0000467!1.75e-07!625;UBERON:0000477!1.84e-07!286;UBERON:0000480!2.73e-07!626;UBERON:0004573!5.57e-07!33;UBERON:0004571!5.57e-07!33;UBERON:0000055!6.20e-07!69;UBERON:0004535!9.89e-07!110 | |ontology_enrichment_uberon=UBERON:0000475!5.08e-12!365;UBERON:0000481!6.04e-11!347;UBERON:0000468!9.16e-11!659;UBERON:0002385!2.20e-10!63;UBERON:0001015!2.20e-10!63;UBERON:0000383!2.20e-10!63;UBERON:0000914!6.89e-10!83;UBERON:0002329!6.89e-10!83;UBERON:0003077!6.89e-10!83;UBERON:0003059!6.89e-10!83;UBERON:0007282!6.89e-10!83;UBERON:0009618!6.89e-10!83;UBERON:0007285!6.89e-10!83;UBERON:0001134!9.49e-10!61;UBERON:0002036!9.49e-10!61;UBERON:0003082!9.49e-10!61;UBERON:0004872!3.05e-09!84;UBERON:0004290!5.68e-09!70;UBERON:0005256!6.83e-09!143;UBERON:0003103!1.04e-08!69;UBERON:0000486!1.23e-08!82;UBERON:0002049!1.36e-08!79;UBERON:0007798!1.36e-08!79;UBERON:0001637!1.48e-08!42;UBERON:0003509!1.48e-08!42;UBERON:0004572!1.48e-08!42;UBERON:0002100!2.80e-08!216;UBERON:0007100!4.03e-08!27;UBERON:0003914!5.04e-08!118;UBERON:0000483!6.76e-08!309;UBERON:0000119!7.94e-08!312;UBERON:0001009!8.85e-08!113;UBERON:0001981!1.46e-07!60;UBERON:0007500!1.46e-07!60;UBERON:0004537!1.46e-07!60;UBERON:0006965!1.46e-07!60;UBERON:0000467!1.75e-07!625;UBERON:0000477!1.84e-07!286;UBERON:0000480!2.73e-07!626;UBERON:0004573!5.57e-07!33;UBERON:0004571!5.57e-07!33;UBERON:0000055!6.20e-07!69;UBERON:0004535!9.89e-07!110 | ||
|ontology_enrichment_uberon_v019=UBERON:0007100;3.99e-07;25 | |||
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|phase1_expression=6.7221000330106,8.34992043174834,5.49722175974288,19.0139266870948,5.36353313312745,7.85104671690332,5.06599756336621,1.26343974685366,0.261185628199839,1.72013755551056,1.39560233594486,4.58726881473362,3.4289707169699,0.247532705920093,0.331397375727916,11.4295274896802,8.43772339233568,8.03341099426111,9.75865597581014,1.10808952269109,2.04000691244253,1.25381888591235,2.0036519099174,2.73748850145768,5.52387614217132,0.0764134057479513,0,0,0,0,0.309632246632152,0,0.6024118375565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.31420598941885,2.01210257911091,0.511450247374121,3.2529523714611,6.01605492763067,5.64901423947212,0,2.43317435151318,5.10488012685966,12.4168462579036,11.0671829973339,0.785874452986276,0,0,0,0,0,0,0,0,0.79504962946682,0.860234595106124,0.347140501607594,1.13061588384802,0.838998872419812,1.6507082516404,0.835979866147242,1.03366703667732,0.35576626268671,2.00832367658802,0,0.760272105718513,0.732186172644509,0.367663080345869,5.67099363517232,0.535798369704479,0.898117490504679,0.225222960966644,0,0,0.732806975721629,0,0,0,19.3819061161174,4.43206790826029,1.58891016975863,2.0078563452417,2.83734705758686,5.60677600142307,4.2699598291882,11.3467072271894,0.622422070799533,1.75123873690594,0.817309515567294,0.454072282934794,1.15235184896,0,0,0.570471821544449,0.597794722207204,0.23486899728753,0.161872944368132,0.421352420106746,0,0.737005903870608,0.103325781175765,1.18800285728205,4.94533858557114,0,0.718618141816238,0.505008341862199,0.500474079487857,0.277064115484183,7.46261955497424,15.937365381549,3.45547535485173,2.94923676216055,6.45802688479903,5.12537733164562,8.47727604638247,3.90118424909723,2.26715564324566,5.92573242104947,3.16398655763703,4.21940830603166,11.8873146296662,6.56327813034698,3.86609574297657,0.969876340912871,8.52023022039874,8.66468044757706,3.56077243852024,0.773043412653187,1.90922284413584,0.286804595389004,2.5614478287215,2.38553582978673,0.929551542956147,2.38420426535352,1.51392510525377,2.55484151353081,3.12899064659632,14.1513006402435,2.76269842704961,1.39310378409594,0.721879481669586,1.65629520055781,2.02301628093722,1.20505514941741,1.65440959098591,1.30727666455444,0.949082476444386,0.808987848960987,1.37355025587742,1.53898862778556,0.738155454624648,0,0,0,0,0,0.590789906681404,0,0.491953754172454,3.25978839567199,0.878002283269004,0,0.201057944823262,0.277765335475589,0,0,10.1031939417691,1.39116485970092,4.46153038096122,1.73239737313289,1.38895653772983,3.23432058798817,0,0,0,0,0.148631162288728,2.81201501960331,5.87937448696008,1.13420077793909,0.268675568108545,0.581267877027924,0.766765358330422,0,0.088048434013226,0,0,0,0.126995788584338,0,0,1.71072446022705,0.308482478109971,0.600686115687835,0.285826432630578,0.448524337381443,0.43596006883328,0.95339771567235,4.13669490424889,0,2.535908257668,10.1056484302251,11.4408180602503,0.514414748524284,0,0.266422179016099,2.7165818795048,0.542621605391443,0.823240336780769,1.30294473717494,4.6200953336531,0,3.91871190177462,6.97226766880235,14.4960837213983,0,0,0,8.86611965318856,13.7834323000937,1.42636905040718,3.4747513600219,3.08214483825575,2.14873155887875,0.112085143993527,0,0,0,0,0,0,0.335032530668698,0.637938751653163,0,0,0,0.24538298343828,1.00034104211935,0.813795071099207,16.4296980609338,22.1251946108481,7.56971592162886,6.91134348457008,0.300946099727719,13.6444502433591,3.10419213877515,5.31380478828349,5.53107505625109,1.56390506042549,0.391602314925481,1.37257369524342,0,0.215714200818617,0,0.606255142892519,1.66435439510497,3.93107381328584,6.69891081110698,4.75732117192994,14.8749850049529,4.74114852246094,14.3278029738677,16.8896617200788,4.45254199334973,5.70575867069826,6.21466038595945,0.98552587216571,3.11552657510173,2.5566283261191,0.846016147141356,4.41114234667227,0.460404944679482,2.18147451512753,7.4657378882754,4.58935452357984,0.451199612907412,4.6979355633693,0,2.92278449306521,6.43864936246542,0,0.850468526382578,13.8186186305369,1.54227252690289,1.35473218771926,2.00675909541941,0.509752546090077,1.66215201785745,2.46262230194396,1.09629938322967,0.784306353074702,1.02580050046556,2.95213181129735,2.92840555197873,0.618246069886334,1.19040304263846,0.165018999841176,1.14853107599234,1.95018073810956,0,0.580024309752732,0.616194468458578,0.767518373630648,1.37836572484531,0.107420244868274,0,1.10794615640931,0.890320356467374,2.47927373041467,6.1500821556834,0,0.809262246844399,8.36721988735114,3.46293581513704,0.6970372701606,3.38836938193698,2.66153015158511,0,7.04232032594896,22.4706072184926,2.60510858551767,3.16379424718726,4.76575484809562,0,2.56763392820352,0,9.41938368239076,2.69808686374972,3.29444435683266,1.64937363283961,1.81964233415984,3.17020642346017,4.21258456238981,1.46290121726877,4.87426979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| ||
|short_description=p5@TPM1 | |short_description=p5@TPM1 | ||
}} | }} |
Latest revision as of 11:38, 18 September 2015
Short description: | p5@TPM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_TPM1_5end |
Coexpression cluster: | C1041_heart_hepatic_left_mesodermal_smooth_spindle_skeletal |
Association with transcript: | 164bp_to_ENST00000558400_5end |
EntrezGene: | TPM1 |
HGNC: | 12010 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 9.00e-10 | 43 |
smooth muscle myoblast | 9.00e-10 | 43 |
vascular associated smooth muscle cell | 1.12e-09 | 32 |
muscle precursor cell | 4.54e-08 | 58 |
myoblast | 4.54e-08 | 58 |
multi-potent skeletal muscle stem cell | 4.54e-08 | 58 |
muscle cell | 1.97e-07 | 55 |
mesodermal cell | 2.03e-07 | 121 |
electrically responsive cell | 8.20e-07 | 61 |
electrically active cell | 8.20e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
muscle tissue | 1.13e-10 | 64 |
musculature | 1.13e-10 | 64 |
musculature of body | 1.13e-10 | 64 |
skeletal muscle tissue | 5.98e-10 | 62 |
striated muscle tissue | 5.98e-10 | 62 |
myotome | 5.98e-10 | 62 |
dense mesenchyme tissue | 4.64e-09 | 73 |
epithelial vesicle | 8.70e-09 | 78 |
paraxial mesoderm | 1.21e-08 | 72 |
presumptive paraxial mesoderm | 1.21e-08 | 72 |
somite | 1.28e-08 | 71 |
presomitic mesoderm | 1.28e-08 | 71 |
presumptive segmental plate | 1.28e-08 | 71 |
dermomyotome | 1.28e-08 | 71 |
trunk paraxial mesoderm | 1.28e-08 | 71 |
artery | 5.15e-08 | 42 |
arterial blood vessel | 5.15e-08 | 42 |
arterial system | 5.15e-08 | 42 |
multilaminar epithelium | 7.02e-08 | 83 |
primary circulatory organ | 1.76e-07 | 27 |
compound organ | 2.13e-07 | 68 |
systemic artery | 6.23e-07 | 33 |
systemic arterial system | 6.23e-07 | 33 |