FFCP PHASE1:Hg19::chr3:48520793..48520806,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51246 | |EntrezGene=51246 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30376 | |HGNC=30376 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=161bp_to_ENST00000486344,uc011bbl.1_5end | |association_with_transcript=161bp_to_ENST00000486344,uc011bbl.1_5end | ||
|cluster_id=chr3:48520793..48520806,- | |||
|coexpression_cluster_id=C239 | |coexpression_cluster_id=C239 | ||
|description=CAGE_peak_20_at_SHISA5_5end | |description=CAGE_peak_20_at_SHISA5_5end | ||
|id=chr3:48520793..48520806,- | |id=chr3:48520793..48520806,- | ||
|ontology_enrichment_celltype=CL:0000542!4.81e-36!53;CL:0000051!4.81e-36!53;CL:0000838!3.80e-34!52;CL:0000084!1.33e-23!25;CL:0000827!1.33e-23!25;CL:0000791!7.99e-22!18;CL:0000789!7.99e-22!18;CL:0002420!7.99e-22!18;CL:0002419!7.99e-22!18;CL:0000790!7.99e-22!18;CL:0002087!8.75e-18!119;CL:0000738!1.98e-17!140;CL:0000625!1.19e-16!11;CL:0000037!1.49e-14!172;CL:0000566!1.49e-14!172;CL:0002032!1.61e-14!165;CL:0000837!1.61e-14!165;CL:0002031!2.40e-14!124;CL:0000988!3.03e-13!182;CL:0000623!2.36e-09!3;CL:0000825!2.36e-09!3;CL:0000624!2.72e-08!6;CL:0000945!5.26e-08!24;CL:0000826!5.26e-08!24 | |ontology_enrichment_celltype=CL:0000542!4.81e-36!53;CL:0000051!4.81e-36!53;CL:0000838!3.80e-34!52;CL:0000084!1.33e-23!25;CL:0000827!1.33e-23!25;CL:0000791!7.99e-22!18;CL:0000789!7.99e-22!18;CL:0002420!7.99e-22!18;CL:0002419!7.99e-22!18;CL:0000790!7.99e-22!18;CL:0002087!8.75e-18!119;CL:0000738!1.98e-17!140;CL:0000625!1.19e-16!11;CL:0000037!1.49e-14!172;CL:0000566!1.49e-14!172;CL:0002032!1.61e-14!165;CL:0000837!1.61e-14!165;CL:0002031!2.40e-14!124;CL:0000988!3.03e-13!182;CL:0000623!2.36e-09!3;CL:0000825!2.36e-09!3;CL:0000624!2.72e-08!6;CL:0000945!5.26e-08!24;CL:0000826!5.26e-08!24 | ||
|ontology_enrichment_celltype_v019=CL:0000898;2.96e-14;3!CL:0000084;7.54e-14;25!CL:0000791;1.09e-13;18!CL:0000789;1.09e-13;18!CL:0002419;1.09e-13;18!CL:0000895;4.01e-11;1!CL:0000625;1.13e-08;11!CL:0000624;1.43e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000898,3.62e-14,3;CL:0000084,7.04e-14,25;CL:0000827,7.04e-14,25;CL:0000791,1.03e-13,18;CL:0000789,1.03e-13,18;CL:0002420,1.03e-13,18;CL:0002419,1.03e-13,18;CL:0000790,1.03e-13,18;CL:0000810,5.43e-11,1;CL:0000895,5.43e-11,1;CL:0002436,5.43e-11,1;CL:0002427,5.43e-11,1;CL:0002428,5.43e-11,1;CL:0002429,5.43e-11,1;CL:0002433,5.43e-11,1;CL:0002431,5.43e-11,1;CL:0002432,5.43e-11,1;CL:0000625,9.89e-09,11;CL:0000838,1.24e-08,52;CL:0000542,1.87e-08,53;CL:0000051,1.87e-08,53;CL:0000624,1.57e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000790;1.09e-13;18!CL:0002427;4.01e-11;1 | |||
|ontology_enrichment_disease=DOID:0060058!3.15e-07!10 | |ontology_enrichment_disease=DOID:0060058!3.15e-07!10 | ||
|ontology_enrichment_disease_v019=DOID:0060060;4.01e-11;1!DOID:0060061;4.01e-11;1!DOID:8691;4.01e-11;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,3.63e-11,1;DOID:0060061,3.63e-11,1;DOID:8691,3.63e-11,1 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p20@SHISA5 | |short_description=p20@SHISA5 | ||
}} | }} |
Latest revision as of 14:19, 18 September 2015
Short description: | p20@SHISA5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_SHISA5_5end |
Coexpression cluster: | C239_CD4_lymphangiectasia_CD8_NK_mycosis_Renal_hairy |
Association with transcript: | 161bp_to_ENST00000486344, uc011bbl.1_5end |
EntrezGene: | SHISA5 |
HGNC: | 30376 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
naive T cell | 3.62e-14 | 3 |
T cell | 7.04e-14 | 25 |
pro-T cell | 7.04e-14 | 25 |
mature alpha-beta T cell | 1.03e-13 | 18 |
alpha-beta T cell | 1.03e-13 | 18 |
immature T cell | 1.03e-13 | 18 |
mature T cell | 1.03e-13 | 18 |
immature alpha-beta T cell | 1.03e-13 | 18 |
CD4-positive, alpha-beta thymocyte | 5.43e-11 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 5.43e-11 | 1 |
mature CD4 single-positive thymocyte | 5.43e-11 | 1 |
resting double-positive thymocyte | 5.43e-11 | 1 |
double-positive blast | 5.43e-11 | 1 |
CD69-positive double-positive thymocyte | 5.43e-11 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 5.43e-11 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 5.43e-11 | 1 |
CD24-positive, CD4 single-positive thymocyte | 5.43e-11 | 1 |
CD8-positive, alpha-beta T cell | 9.89e-09 | 11 |
lymphoid lineage restricted progenitor cell | 1.24e-08 | 52 |
lymphocyte | 1.87e-08 | 53 |
common lymphoid progenitor | 1.87e-08 | 53 |
CD4-positive, alpha-beta T cell | 1.57e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 3.63e-11 | 1 |
cutaneous T cell lymphoma | 3.63e-11 | 1 |
mycosis fungoides | 3.63e-11 | 1 |