FFCP PHASE1:Hg19::chr4:77908937..77908956,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55752 | |EntrezGene=55752 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25589 | |HGNC=25589 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000512333_5end | |association_with_transcript=0bp_to_ENST00000512333_5end | ||
|cluster_id=chr4:77908937..77908956,+ | |||
|coexpression_cluster_id=C4426 | |||
|description=CAGE_peak_11_at_SEPT11_5end | |description=CAGE_peak_11_at_SEPT11_5end | ||
|id=chr4:77908937..77908956,+ | |id=chr4:77908937..77908956,+ | ||
|ontology_enrichment_celltype=CL:0000055!2.82e-27!180;CL:0000057!2.30e-17!75;CL:0002620!3.33e-12!23;CL:0000680!5.56e-11!57;CL:0000056!5.56e-11!57;CL:0000355!5.56e-11!57;CL:0000187!7.23e-11!54;CL:0000048!1.08e-10!430;CL:0000183!2.48e-10!59;CL:0000723!3.35e-10!436;CL:0000034!1.42e-09!444;CL:0002371!1.59e-09!591;CL:0000393!4.26e-09!60;CL:0000211!4.26e-09!60;CL:0002334!7.38e-08!12;CL:0000144!8.80e-08!625;CL:1000306!1.38e-07!4;CL:0002547!1.38e-07!4;CL:0000192!1.58e-07!42;CL:0000514!1.58e-07!42 | |ontology_enrichment_celltype=CL:0000055!2.82e-27!180;CL:0000057!2.30e-17!75;CL:0002620!3.33e-12!23;CL:0000680!5.56e-11!57;CL:0000056!5.56e-11!57;CL:0000355!5.56e-11!57;CL:0000187!7.23e-11!54;CL:0000048!1.08e-10!430;CL:0000183!2.48e-10!59;CL:0000723!3.35e-10!436;CL:0000034!1.42e-09!444;CL:0002371!1.59e-09!591;CL:0000393!4.26e-09!60;CL:0000211!4.26e-09!60;CL:0002334!7.38e-08!12;CL:0000144!8.80e-08!625;CL:1000306!1.38e-07!4;CL:0002547!1.38e-07!4;CL:0000192!1.58e-07!42;CL:0000514!1.58e-07!42 | ||
|ontology_enrichment_celltype_v019=CL:1000306;7.20e-15;4!CL:0002547;7.20e-15;4!CL:0002579;2.47e-12;3!CL:0002580;9.68e-12;3!CL:0000135;2.10e-11;3!CL:0000388;2.10e-11;3!CL:0002620;3.56e-11;23!CL:0002334;8.34e-11;12!CL:0002588;3.11e-08;2!CL:0002195;9.72e-08;2!CL:0002571;9.72e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.50e-21,76;CL:1000306,6.98e-15,4;CL:0002547,6.98e-15,4;CL:0002579,3.05e-12,3;CL:0002580,7.13e-12,3;CL:0000135,2.35e-11,3;CL:0000388,2.35e-11,3;CL:0002620,3.71e-11,23;CL:0002334,7.94e-11,12;CL:0000048,1.97e-09,427;CL:0000723,3.75e-09,433;CL:0000034,8.62e-09,441;CL:0000136,3.20e-08,15;CL:0002588,5.16e-08,2;CL:0002195,9.41e-08,2;CL:0002571,9.41e-08,2;CL:0000134,7.57e-07,354 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!1.28e-08!5;DOID:450!1.28e-08!5;DOID:66!1.28e-08!5;DOID:423!1.28e-08!5;DOID:0080000!1.28e-08!5;DOID:11722!1.28e-08!5 | |ontology_enrichment_disease=DOID:17!1.28e-08!5;DOID:450!1.28e-08!5;DOID:66!1.28e-08!5;DOID:423!1.28e-08!5;DOID:0080000!1.28e-08!5;DOID:11722!1.28e-08!5 | ||
|ontology_enrichment_disease_v019=DOID:17;8.59e-12;5!DOID:450;8.59e-12;5!DOID:66;8.59e-12;5!DOID:423;8.59e-12;5!DOID:0080000;8.59e-12;5!DOID:11722;8.59e-12;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,9.79e-12,5;DOID:450,9.79e-12,5;DOID:66,9.79e-12,5;DOID:423,9.79e-12,5;DOID:0080000,9.79e-12,5;DOID:11722,9.79e-12,5 | |||
|ontology_enrichment_uberon=UBERON:0001134!8.63e-10!61;UBERON:0002036!8.63e-10!61;UBERON:0003082!8.63e-10!61;UBERON:0002385!2.95e-09!63;UBERON:0001015!2.95e-09!63;UBERON:0000383!2.95e-09!63;UBERON:0004290!2.40e-08!70;UBERON:0003688!1.06e-07!6;UBERON:0002358!1.06e-07!6;UBERON:0003684!1.06e-07!6;UBERON:0001178!1.06e-07!6;UBERON:0002199!1.20e-07!45;UBERON:0002416!1.20e-07!45;UBERON:0000415!1.38e-07!4;UBERON:0007240!1.38e-07!4;UBERON:0005742!1.38e-07!4;UBERON:0005734!1.38e-07!4;UBERON:0004664!1.38e-07!4;UBERON:0004663!1.38e-07!4;UBERON:0002097!2.91e-07!40;UBERON:0001135!3.69e-07!15;UBERON:0000475!7.10e-07!365;UBERON:0000486!7.32e-07!82 | |ontology_enrichment_uberon=UBERON:0001134!8.63e-10!61;UBERON:0002036!8.63e-10!61;UBERON:0003082!8.63e-10!61;UBERON:0002385!2.95e-09!63;UBERON:0001015!2.95e-09!63;UBERON:0000383!2.95e-09!63;UBERON:0004290!2.40e-08!70;UBERON:0003688!1.06e-07!6;UBERON:0002358!1.06e-07!6;UBERON:0003684!1.06e-07!6;UBERON:0001178!1.06e-07!6;UBERON:0002199!1.20e-07!45;UBERON:0002416!1.20e-07!45;UBERON:0000415!1.38e-07!4;UBERON:0007240!1.38e-07!4;UBERON:0005742!1.38e-07!4;UBERON:0005734!1.38e-07!4;UBERON:0004664!1.38e-07!4;UBERON:0004663!1.38e-07!4;UBERON:0002097!2.91e-07!40;UBERON:0001135!3.69e-07!15;UBERON:0000475!7.10e-07!365;UBERON:0000486!7.32e-07!82 | ||
|ontology_enrichment_uberon_v019=UBERON:0003688;1.20e-15;6!UBERON:0002358;1.20e-15;6!UBERON:0003684;1.20e-15;6!UBERON:0001178;1.20e-15;6!UBERON:0004797;7.20e-15;4!UBERON:0000415;7.20e-15;4!UBERON:0007240;7.20e-15;4!UBERON:0005742;7.20e-15;4!UBERON:0005734;7.20e-15;4!UBERON:0004664;7.20e-15;4!UBERON:0004663;7.20e-15;4!UBERON:0004457;2.46e-14;9!UBERON:0000042;2.46e-14;9!UBERON:0007846;2.10e-11;3!UBERON:0000043;2.10e-11;3!UBERON:0007845;2.10e-11;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,1.12e-15,6;UBERON:0002358,1.12e-15,6;UBERON:0003684,1.12e-15,6;UBERON:0001178,1.12e-15,6;UBERON:0000415,6.98e-15,4;UBERON:0007240,6.98e-15,4;UBERON:0005742,6.98e-15,4;UBERON:0005734,6.98e-15,4;UBERON:0004664,6.98e-15,4;UBERON:0004663,6.98e-15,4;UBERON:0007846,2.35e-11,3;UBERON:0000043,2.35e-11,3;UBERON:0007845,2.35e-11,3;UBERON:0004457,1.31e-10,12;UBERON:0000042,1.31e-10,12;UBERON:0004797,1.60e-08,7;UBERON:0002097,5.85e-07,41;UBERON:0002384,9.33e-07,371 | |||
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|short_description=p11@SEPT11 | |short_description=p11@SEPT11 | ||
}} | }} |
Latest revision as of 18:36, 18 September 2015
Short description: | p11@SEPT11 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_SEPT11_5end |
Coexpression cluster: | C4426_Ewing_Preadipocyte_Fibroblast_basal_neurofibroma_Multipotent_Adipocyte |
Association with transcript: | 0bp_to_ENST00000512333_5end |
EntrezGene: | SEPT11 |
HGNC: | 25589 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.50e-21 | 76 |
fibroblast of tunica adventitia of artery | 6.98e-15 | 4 |
fibroblast of the aortic adventitia | 6.98e-15 | 4 |
omentum preadipocyte | 3.05e-12 | 3 |
preadipocyte of the breast | 7.13e-12 | 3 |
fibrocyte | 2.35e-11 | 3 |
tendon cell | 2.35e-11 | 3 |
skin fibroblast | 3.71e-11 | 23 |
preadipocyte | 7.94e-11 | 12 |
multi fate stem cell | 1.97e-09 | 427 |
somatic stem cell | 3.75e-09 | 433 |
stem cell | 8.62e-09 | 441 |
fat cell | 3.20e-08 | 15 |
smooth muscle cell of the umbilical vein | 5.16e-08 | 2 |
hepatic stem cell | 9.41e-08 | 2 |
hepatic mesenchymal stem cell | 9.41e-08 | 2 |
mesenchymal cell | 7.57e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
omentum | 1.12e-15 | 6 |
peritoneum | 1.12e-15 | 6 |
abdominal cavity | 1.12e-15 | 6 |
visceral peritoneum | 1.12e-15 | 6 |
artery wall | 6.98e-15 | 4 |
tunica adventitia of artery | 6.98e-15 | 4 |
adventitia | 6.98e-15 | 4 |
tunica adventitia of blood vessel | 6.98e-15 | 4 |
aorta tunica adventitia | 6.98e-15 | 4 |
aorta wall | 6.98e-15 | 4 |
dense regular connective tissue | 2.35e-11 | 3 |
tendon | 2.35e-11 | 3 |
regular connective tissue | 2.35e-11 | 3 |
cavity lining | 1.31e-10 | 12 |
serous membrane | 1.31e-10 | 12 |
blood vessel layer | 1.60e-08 | 7 |
skin of body | 5.85e-07 | 41 |
connective tissue | 9.33e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 9.79e-12 | 5 |
myotonic disease | 9.79e-12 | 5 |
muscle tissue disease | 9.79e-12 | 5 |
myopathy | 9.79e-12 | 5 |
muscular disease | 9.79e-12 | 5 |
myotonic dystrophy | 9.79e-12 | 5 |