Personal tools

FFCP PHASE1:Hg19::chr6:42141096..42141110,+: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(8 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{FFCP
{{FFCP
|DHSsupport=supported 
|DPIdataset=robust
|EntrezGene=2978
|EntrezGene=2978
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding
|HGNC=4678
|HGNC=4678
|TSSclassifier=strong
|UniProt=P43080
|UniProt=P43080
|association_with_transcript=67bp_to_ENST00000372958_5end
|association_with_transcript=67bp_to_ENST00000372958_5end
|cluster_id=chr6:42141096..42141110,+
|coexpression_cluster_id=C40
|description=CAGE_peak_4_at_GUCA1A_5end
|description=CAGE_peak_4_at_GUCA1A_5end
|id=chr6:42141096..42141110,+
|id=chr6:42141096..42141110,+
|ontology_enrichment_celltype=CL:0000306!2.43e-08!4;CL:0002222!2.43e-08!4;CL:0002224!2.43e-08!4;CL:0000243!1.38e-07!15;CL:0000125!1.38e-07!15;CL:0000030!1.38e-07!15;CL:0000339!1.38e-07!15;CL:0000095!6.97e-07!17;CL:0000123!6.97e-07!17
|ontology_enrichment_celltype=CL:0000306!2.43e-08!4;CL:0002222!2.43e-08!4;CL:0002224!2.43e-08!4;CL:0000243!1.38e-07!15;CL:0000125!1.38e-07!15;CL:0000030!1.38e-07!15;CL:0000339!1.38e-07!15;CL:0000095!6.97e-07!17;CL:0000123!6.97e-07!17
|ontology_enrichment_celltype_v019=
|ontology_enrichment_celltype_v019_2=
|ontology_enrichment_development_v019=UBERON:0003056;1.60e-14;3
|ontology_enrichment_disease=DOID:3093!2.34e-10!11
|ontology_enrichment_disease_v019=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0001905!2.69e-57!2;UBERON:0002757!2.69e-57!2;UBERON:0010134!2.69e-57!2;UBERON:0002784!2.69e-57!2;UBERON:0005408!2.69e-57!2;UBERON:0001899!2.69e-57!2;UBERON:0003296!2.74e-29!4;UBERON:0010133!2.74e-29!4;UBERON:0000966!1.81e-23!5;UBERON:0005388!1.81e-23!5;UBERON:0001802!1.81e-23!5;UBERON:0000970!4.70e-23!20;UBERON:0002104!5.48e-22!21;UBERON:0000020!3.94e-20!23;UBERON:0001032!2.56e-19!24;UBERON:0004456!2.56e-19!24;UBERON:0001894!3.15e-17!7;UBERON:0006222!3.15e-17!7;UBERON:0000019!4.74e-14!19;UBERON:0000047!4.74e-14!19;UBERON:0004088!4.74e-14!19;UBERON:0003072!4.74e-14!19;UBERON:0003071!4.74e-14!19;UBERON:0004128!4.74e-14!19;UBERON:0001456!8.73e-13!21;UBERON:0003056!9.77e-12!61;UBERON:0005085!1.87e-09!29;UBERON:0003075!1.90e-08!86;UBERON:0007284!1.90e-08!86;UBERON:0005743!2.31e-08!86;UBERON:0000033!2.33e-08!123;UBERON:0010077!2.43e-08!4;UBERON:0005389!2.43e-08!4;UBERON:0000484!2.43e-08!4;UBERON:0002546!2.43e-08!4;UBERON:0000965!2.43e-08!4;UBERON:0001803!2.43e-08!4;UBERON:0003073!2.43e-08!4;UBERON:0005426!2.43e-08!4;UBERON:0002346!4.35e-08!90;UBERON:0000153!5.56e-08!129;UBERON:0007811!5.56e-08!129;UBERON:0000073!1.31e-07!94;UBERON:0001016!1.31e-07!94;UBERON:0000955!7.70e-07!69;UBERON:0006238!7.70e-07!69
|ontology_enrichment_uberon=UBERON:0001905!2.69e-57!2;UBERON:0002757!2.69e-57!2;UBERON:0010134!2.69e-57!2;UBERON:0002784!2.69e-57!2;UBERON:0005408!2.69e-57!2;UBERON:0001899!2.69e-57!2;UBERON:0003296!2.74e-29!4;UBERON:0010133!2.74e-29!4;UBERON:0000966!1.81e-23!5;UBERON:0005388!1.81e-23!5;UBERON:0001802!1.81e-23!5;UBERON:0000970!4.70e-23!20;UBERON:0002104!5.48e-22!21;UBERON:0000020!3.94e-20!23;UBERON:0001032!2.56e-19!24;UBERON:0004456!2.56e-19!24;UBERON:0001894!3.15e-17!7;UBERON:0006222!3.15e-17!7;UBERON:0000019!4.74e-14!19;UBERON:0000047!4.74e-14!19;UBERON:0004088!4.74e-14!19;UBERON:0003072!4.74e-14!19;UBERON:0003071!4.74e-14!19;UBERON:0004128!4.74e-14!19;UBERON:0001456!8.73e-13!21;UBERON:0003056!9.77e-12!61;UBERON:0005085!1.87e-09!29;UBERON:0003075!1.90e-08!86;UBERON:0007284!1.90e-08!86;UBERON:0005743!2.31e-08!86;UBERON:0000033!2.33e-08!123;UBERON:0010077!2.43e-08!4;UBERON:0005389!2.43e-08!4;UBERON:0000484!2.43e-08!4;UBERON:0002546!2.43e-08!4;UBERON:0000965!2.43e-08!4;UBERON:0001803!2.43e-08!4;UBERON:0003073!2.43e-08!4;UBERON:0005426!2.43e-08!4;UBERON:0002346!4.35e-08!90;UBERON:0000153!5.56e-08!129;UBERON:0007811!5.56e-08!129;UBERON:0000073!1.31e-07!94;UBERON:0001016!1.31e-07!94;UBERON:0000955!7.70e-07!69;UBERON:0006238!7.70e-07!69
|ontology_enrichment_uberon_v019=UBERON:0001905;3.49e-79;2!UBERON:0002757;3.49e-79;2!UBERON:0010134;3.49e-79;2!UBERON:0005408;3.49e-79;2!UBERON:0001899;3.49e-79;2!UBERON:0003296;2.71e-40;4!UBERON:0010133;2.71e-40;4!UBERON:0002784;2.71e-40;4!UBERON:0001894;1.44e-23;7!UBERON:0000966;2.97e-09;5!UBERON:0005388;2.97e-09;5!UBERON:0001802;2.97e-09;5!UBERON:0000970;5.48e-09;20!UBERON:0002104;1.32e-08;21!UBERON:0000020;6.08e-08;23!UBERON:0001032;1.19e-07;24!UBERON:0004456;1.19e-07;24
|ontology_enrichment_uberon_v019_2=UBERON:0001905,3.49e-79,2;UBERON:0002757,3.49e-79,2;UBERON:0010134,3.49e-79,2;UBERON:0005408,3.49e-79,2;UBERON:0001899,3.49e-79,2;UBERON:0003296,2.71e-40,4;UBERON:0010133,2.71e-40,4;UBERON:0002784,2.71e-40,4;UBERON:0001894,1.44e-23,7;UBERON:0006222,1.44e-23,7;UBERON:0000970,1.32e-08,21;UBERON:0002104,1.32e-08,21;UBERON:0000966,6.34e-08,6;UBERON:0005388,6.34e-08,6;UBERON:0001802,6.34e-08,6;UBERON:0000020,1.19e-07,24;UBERON:0001032,1.19e-07,24;UBERON:0004456,1.19e-07,24
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34779121492523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,58.7549926029384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.90532133366085,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,39.1062340191149,14.1239163331906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,28.4476645823092,0.316027223465453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34779121492523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,58.7549926029384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.90532133366085,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,39.1062340191149,14.1239163331906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,28.4476645823092,0.316027223465453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|short_description=p4@GUCA1A
|short_description=p4@GUCA1A
}}
}}

Latest revision as of 19:45, 18 September 2015

Short description:p4@GUCA1A
Species:Human (Homo sapiens)
DPI dataset: Robust
TSS-like-by-RIKEN-classifier(Yes/No): Yes
DHS support(Yes/No): Yes
Description: CAGE_peak_4_at_GUCA1A_5end
Coexpression cluster:C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small
Association with transcript: 67bp_to_ENST00000372958_5end
EntrezGene:GUCA1A
HGNC: 4678
UniProt: P43080
Genome view:ZENBU


View on UCSC genome browser


Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression




0
10
20
30
40
50
60




  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data