FFCP PHASE1:Hg19::chr6:43140149..43140177,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:43140149..43140177,+ to FFCP PHASE1:Hg19::chr6:43140149..43140177,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6722 | |EntrezGene=6722 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11291 | |HGNC=11291 | ||
|TSSclassifier=strong | |||
|UniProt=F5H6V4 | |UniProt=F5H6V4 | ||
|association_with_transcript=21bp_to_ENST00000457278,uc011dvf.1_5end | |||
|cluster_id=chr6:43140149..43140177,+ | |||
|description=CAGE_peak_8_at_SRF_5end | |||
|id=chr6:43140149..43140177,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.29e-17!180;CL:0000183!8.14e-13!59;CL:0000680!4.13e-12!57;CL:0000056!4.13e-12!57;CL:0000355!4.13e-12!57;CL:0000187!1.09e-11!54;CL:0000393!2.62e-11!60;CL:0000211!2.62e-11!60;CL:0000192!1.79e-09!42;CL:0000514!1.79e-09!42;CL:0000057!1.62e-07!75;CL:0000220!1.86e-07!246;CL:0002321!2.66e-07!248;CL:0000359!4.04e-07!32;CL:0000548!4.33e-07!679;CL:0000004!4.33e-07!679;CL:0000255!4.33e-07!679;CL:0000222!4.55e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000187;1.51e-08;55!CL:0000359;1.64e-08;32!CL:0000192;2.26e-08;43!CL:0002594;3.41e-08;4!CL:0000064;3.39e-07;3!CL:0000067;3.39e-07;3!CL:0005012;3.39e-07;3!CL:0002304;3.39e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000187,2.50e-14,55;CL:0000680,3.05e-13,58;CL:0000056,3.05e-13,58;CL:0000355,3.05e-13,58;CL:0000192,4.18e-13,43;CL:0000514,4.18e-13,43;CL:0000393,2.88e-12,61;CL:0000211,2.88e-12,61;CL:0000359,1.04e-08,32;CL:0002594,6.99e-08,4;CL:0000064,2.42e-07,3;CL:0000067,2.42e-07,3;CL:0005012,2.42e-07,3;CL:0002304,2.42e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000514;2.26e-08;43!CL:0000355;2.81e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!1.22e-11!143;UBERON:0002385!3.62e-11!63;UBERON:0001015!3.62e-11!63;UBERON:0000383!3.62e-11!63;UBERON:0001134!5.54e-11!61;UBERON:0002036!5.54e-11!61;UBERON:0003082!5.54e-11!61;UBERON:0000914!4.84e-10!83;UBERON:0002329!4.84e-10!83;UBERON:0003077!4.84e-10!83;UBERON:0003059!4.84e-10!83;UBERON:0007282!4.84e-10!83;UBERON:0009618!4.84e-10!83;UBERON:0007285!4.84e-10!83;UBERON:0004290!1.06e-09!70;UBERON:0000490!1.94e-09!138;UBERON:0000486!9.01e-09!82;UBERON:0003914!1.70e-07!118 | |||
|ontology_enrichment_uberon_v019=UBERON:0001310;3.41e-08;4!UBERON:0001778;3.39e-07;3!UBERON:0001775;3.39e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.26e-13,78;UBERON:0001134,3.97e-13,62;UBERON:0002036,3.97e-13,62;UBERON:0003082,3.97e-13,62;UBERON:0002329,4.13e-13,71;UBERON:0003059,4.13e-13,71;UBERON:0007282,4.13e-13,71;UBERON:0004290,4.13e-13,71;UBERON:0009618,4.13e-13,71;UBERON:0003077,7.97e-13,72;UBERON:0007285,7.97e-13,72;UBERON:0007524,1.51e-12,73;UBERON:0002385,1.67e-12,64;UBERON:0001015,1.67e-12,64;UBERON:0000383,1.67e-12,64;UBERON:0000486,3.77e-11,83;UBERON:0005256,3.82e-11,122;UBERON:0003104,1.22e-09,160;UBERON:0009142,1.22e-09,160;UBERON:0000490,1.33e-09,148;UBERON:0001310,6.99e-08,4;UBERON:0001778,2.42e-07,3;UBERON:0001775,2.42e-07,3 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0.491467873003018,0.697801167972428,0,0,0.247532705920093,0.331397375727916,3.36162573225888,1.80808358407193,4.38186054232424,0,1.96993692922861,0.408001382488506,4.38836610069323,0.286235987131057,1.36874425072884,0.753255837568817,0.152826811495903,0.246301768349837,0.314843125254717,0.393364276848904,0,0,0,0,0,0.0774672005803016,0.142169232487422,0,1.10799081706375,0.200544447470142,0,0,0,0,0,0,0,0,0,0.309706370895104,0,0.512321413058201,0,0,0,0,0,0,0,0,0,0,0.329851300186716,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0.196709770113833,0.393010762749165,0.205601498999509,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0.113309342697566,0.383220493601921,0,0,0,0,0,0.150575119077773,0,0,0,0,0.403213486449465,0,0,2.43806866313962,0,1.66221330396589,0.361439152384566,0,0.289693037921647,0.795285947051099,0,3.02511414925017,1.77383517970051,2.0202000709419,0.327447688744282,0.728590576585084,0,0,0.348259474598534,0.132957960518865,0,0,0.371457501329565,0.198762407366705,0,1.04142150482278,1.13061588384802,0,0.275118041940067,0,0,0.71153252537342,0,0.402829317109147,0,0.732186172644509,0,0,0.0892997282840798,0,0.225222960966644,0,0,0.366403487860815,1.31780417436063,7.75560528296651,0,0.496971951695318,0.25326102332916,0.926864265692532,0.573673241497627,0,2.24271040056923,1.06748995729705,2.22000793575444,0.622422070799533,0.134710672069688,0.163461903113459,0.302714855289863,0.576175924479999,0,0,0,0,0,0.161872944368132,0.140450806702248,0,0.368502951935304,0,1.18800285728205,0.989067717114227,0.910161361938026,0.718618141816238,0.168336113954066,0.125118519871964,0,1.31693286264251,1.83892677479412,0.300476117813194,0.794025282120147,0.538168907066586,1.49490172172997,0.211931901159562,0.300091096084402,0.515262646192195,1.54584324027377,0.18611685633159,1.0126579934476,0.876933046450788,0.504867548488229,1.10459878370759,0.161646056818812,2.13005755509969,1.91428986632517,2.03472710772585,0,0,1.43402297694502,0,0.132529768321485,0.232387885739037,0,0.252320850875628,0.36497735907583,0,3.21620469096443,2.76269842704961,0.928735856063958,0,0.118306800039844,0.505754070234305,0.482022059766964,0.220587945464788,0,0.237270619111097,0.134831308160164,0,0,0,0,1.2347220339942,1.47008711385542,0,1.96565443335525,0,0.882926198829301,0,0.343135620597051,0.548751427043128,0,0,0.185176890317059,0.651616610620649,0,2.88662684050547,1.04337364477569,5.4007999348478,0.144366447761074,0,0,0,0,0,0,0,0,0.16798212819886,0.283550194484773,0,0,0,0,0.088048434013226,0,0,0.12624243342638,0,0,0,0,0,0,0,0.224262168690721,0.43596006883328,0.1466765716419,1.42198887333556,0,0,2.92531928243358,0,0,0,0.532844358032199,0.285955987316295,0,0.823240336780769,0,0,0,0.602878754119172,0.871533458600294,1.79951384127703,0,0,0,1.91699884393266,1.14861935834114,1.42636905040718,0.289562613335158,0.205476322550383,0.716243852959582,0,0,0.431255149719035,0.128343036279748,0.508189248444927,0,0.773288812777695,0.167516265334349,0.637938751653163,0.749007023947182,0,2.07207756718018,0.12269149171914,0,0.813795071099207,1.24782516918484,1.24900292158013,0.473107245101804,0.35142424497814,0,0,0,0.664225598535437,1.47495334833363,0.173767228936166,0.391602314925481,1.02943027143257,0,0,0,0,0,0,0,0.460385919864187,0.841980283299221,0.128139149255701,0,1.12597744800525,2.96836132889982,0.154209693802656,0.532685175939381,0.328508624055237,1.03850885836724,0.232420756919918,0.120859449591622,0.200506470303285,0.184161977871793,0.918515585316854,0.728364672026868,1.70461739447251,0.451199612907412,0.15403067420883,0.784349769176855,1.46139224653261,0.105551628892876,0,0,0.647747748306418,0,1.62567862526312,2.50844886927427,0,0,0.671624264166535,0,0,0,0.328014645699706,0.325378394664303,0,0.183138929636687,0.165018999841176,0,0.650060246036521,0,0.96670718292122,0.616194468458578,0.767518373630648,0.137836572484531,0,0.435050081742686,0.255679882248303,2.22580089116843,0.165284915360978,0.384380134730212,0,0,0.464845549297286,0.31481234683064,0.6970372701606,0.616067160352178,1.06461206063404,0,0.9266210955196,0.715624433709956,0,0.949138274156178,1.33441135746677,1.27948895655667,0,0,1.56989728039846,1.43897966066652,0.823611089208164,1.53156123049392,1.61745985258653,0,1.68503382495592,2.43816869544795,0.731140468893853,1.05650146756755,0.272999822815972,1.27264888758341,0,0,1.32687795048244,0.438450885253763,2.89387767133344,0,2.23201414658974,1.239293992399,1.40847801266121,0.286822704408103,0.294747123039363,1.07001315444375,0,0.211107635297664,0.329294892959902,0,0.699869440489966,0.192444225451024,0,0,0.0941438007767792,0.43050537267123,0,0,0.229723400206959,0,0,0,0.238231775457789,0,0,0,0,0.961416640147258,0,0,0,0,0.0711418433484141,0,0,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4098700508785,0,0,0.121360521749513,0.222886768554957,0,0.23874448473769,0,0,0,0.140669416410513,0,0.659215496907038,0.6333762243839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| 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| ||
|short_description=p8@SRF | |||
}} | }} |
Latest revision as of 21:41, 18 September 2015
Short description: | p8@SRF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_SRF_5end |
Coexpression cluster: | NA |
Association with transcript: | 21bp_to_ENST00000457278, uc011dvf.1_5end |
EntrezGene: | SRF |
HGNC: | 11291 |
UniProt: | F5H6V4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle cell | 2.50e-14 | 55 |
muscle precursor cell | 3.05e-13 | 58 |
myoblast | 3.05e-13 | 58 |
multi-potent skeletal muscle stem cell | 3.05e-13 | 58 |
smooth muscle cell | 4.18e-13 | 43 |
smooth muscle myoblast | 4.18e-13 | 43 |
electrically responsive cell | 2.88e-12 | 61 |
electrically active cell | 2.88e-12 | 61 |
vascular associated smooth muscle cell | 1.04e-08 | 32 |
smooth muscle cell of the umbilical artery | 6.99e-08 | 4 |
ciliated cell | 2.42e-07 | 3 |
ciliated epithelial cell | 2.42e-07 | 3 |
multi-ciliated epithelial cell | 2.42e-07 | 3 |
non-pigmented ciliary epithelial cell | 2.42e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 1.26e-13 | 78 |
skeletal muscle tissue | 3.97e-13 | 62 |
striated muscle tissue | 3.97e-13 | 62 |
myotome | 3.97e-13 | 62 |
somite | 4.13e-13 | 71 |
presomitic mesoderm | 4.13e-13 | 71 |
presumptive segmental plate | 4.13e-13 | 71 |
dermomyotome | 4.13e-13 | 71 |
trunk paraxial mesoderm | 4.13e-13 | 71 |
paraxial mesoderm | 7.97e-13 | 72 |
presumptive paraxial mesoderm | 7.97e-13 | 72 |
dense mesenchyme tissue | 1.51e-12 | 73 |
muscle tissue | 1.67e-12 | 64 |
musculature | 1.67e-12 | 64 |
musculature of body | 1.67e-12 | 64 |
multilaminar epithelium | 3.77e-11 | 83 |
trunk mesenchyme | 3.82e-11 | 122 |
mesenchyme | 1.22e-09 | 160 |
entire embryonic mesenchyme | 1.22e-09 | 160 |
unilaminar epithelium | 1.33e-09 | 148 |
umbilical artery | 6.99e-08 | 4 |
ciliary epithelium | 2.42e-07 | 3 |
ciliary body | 2.42e-07 | 3 |