FFCP PHASE1:Hg19::chr6:45390269..45390298,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:45390269..45390298,+ to FFCP PHASE1:Hg19::chr6:45390269..45390298,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=860 | |EntrezGene=860 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10472 | |HGNC=10472 | ||
|TSSclassifier=strong | |||
|UniProt=Q13950,F8W8U5 | |UniProt=Q13950,F8W8U5 | ||
|association_with_transcript=355bp_to_ENST00000359524,ENST00000371432,NM_004348,uc003oxt.2_5end | |||
|cluster_id=chr6:45390269..45390298,+ | |||
|coexpression_cluster_id=C2860 | |||
|description=CAGE_peak_5_at_RUNX2_5end | |||
|id=chr6:45390269..45390298,+ | |||
|ontology_enrichment_celltype=CL:0000988!7.00e-12!182;CL:0000738!7.41e-12!140;CL:0000037!1.23e-11!172;CL:0000566!1.23e-11!172;CL:0000791!1.89e-10!18;CL:0000789!1.89e-10!18;CL:0002420!1.89e-10!18;CL:0002419!1.89e-10!18;CL:0000790!1.89e-10!18;CL:0002320!2.30e-10!365;CL:0000134!3.10e-10!358;CL:0000084!6.33e-10!25;CL:0000827!6.33e-10!25;CL:0002032!7.11e-10!165;CL:0000837!7.11e-10!165;CL:0000219!3.79e-09!390;CL:0002087!8.78e-09!119;CL:0000625!8.03e-08!11;CL:0002031!1.06e-07!124;CL:0000048!2.66e-07!430;CL:0000766!5.38e-07!76 | |||
|ontology_enrichment_celltype_v019=CL:0000084;3.58e-12;25!CL:0000791;3.58e-12;18!CL:0000789;3.58e-12;18!CL:0002419;3.58e-12;18!CL:0000625;1.10e-09;11!CL:0000094;4.97e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,1.80e-16,177;CL:0000037,9.63e-16,168;CL:0000738,2.35e-15,136;CL:0002032,3.35e-13,161;CL:0000837,3.35e-13,161;CL:0000791,2.83e-12,18;CL:0000789,2.83e-12,18;CL:0002420,2.83e-12,18;CL:0002419,2.83e-12,18;CL:0000790,2.83e-12,18;CL:0000084,4.42e-12,25;CL:0000827,4.42e-12,25;CL:0002087,4.08e-11,115;CL:0002031,2.54e-10,120;CL:0000219,2.93e-10,386;CL:0000134,3.30e-10,354;CL:0000625,1.27e-09,11;CL:0002320,1.93e-09,361;CL:0000766,1.33e-08,72;CL:0000763,3.28e-07,108;CL:0000049,3.28e-07,108;CL:0000838,3.30e-07,52;CL:0000094,4.57e-07,8;CL:0000048,6.22e-07,427;CL:0000542,7.02e-07,53;CL:0000051,7.02e-07,53 | |||
|ontology_enrichment_development_v019=CL:0000790;3.58e-12;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!5.32e-10!375;UBERON:0002390!5.66e-10!102;UBERON:0003061!5.66e-10!102;UBERON:0000178!4.08e-09!15;UBERON:0000179!4.08e-09!15;UBERON:0000463!4.08e-09!15;UBERON:0002193!9.83e-09!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.16e-11;15!UBERON:0000179;2.16e-11;15!UBERON:0000463;2.16e-11;15!UBERON:0002390;8.96e-10;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,6.67e-12,98;UBERON:0003061,6.67e-12,98;UBERON:0000178,2.77e-11,15;UBERON:0000179,2.77e-11,15;UBERON:0000463,2.77e-11,15;UBERON:0002193,7.49e-11,108;UBERON:0002384,2.11e-09,371 | |||
|phase1_expression=0.181678379270557,1.07050261945492,0.845726424575827,1.0007329835313,0.446961094427288,0,2.53299878168311,0,0,0.491467873003018,1.39560233594486,0.655324116390517,0,0.990130823680373,0.662794751455832,1.34465029290355,1.80808358407193,0.730310090387373,0.975865597581014,10.5884109946038,10.2000345622127,6.58254915103984,0.85870796139317,2.87436292653057,1.38096903554283,0,0,0,6.29382842958246,9.59573495243032,3.40595471295367,0,0.30120591877825,0,0,0,9.10161361938026,2.21598163412751,2.80762226458198,1.95309783644267,0.447830948479849,1.6194683300949,0.257575567634187,3.05336301437086,6.42389104270976,6.79235371325885,1.85943229524548,2.05583944010913,1.85823822537062,0.575384784644301,1.2808035326455,0.236482229888585,1.03423704220986,3.87290810150296,2.70852973188684,1.50593871634084,1.91034305040492,1.34834090667051,0.612167784741805,4.49300637906531,1.91801137739712,1.64925650093358,1.59570926097305,1.27867425159808,3.48251086354301,0,1.24564449799115,0.75374599577023,0,0.868755378820466,3.02699751316684,1.84138817993782,0.949387162322653,1.05627643155971,0.637812899895131,0.628975936525128,2.13424399178341,1.95229960693958,2.89306056054744,0.285012743741249,0.19891667719909,0.182664153764634,1.75996244461323,1.09227722252426,0.889509253863555,0.426730222566507,0.800791974072025,1.14950487990897,1.32208974556972,1.90810750907073,2.84606484554724,2.34894875748376,0.764546456250458,15.8605594294831,6.1655941927969,5.79444986505169,5.31116379307349,9.03924754323079,9.25206745497792,2.84217042164153,1.95553359980154,1.89379122293893,0,12.0323293435987,6.48132996444642,6.86755073209225,11.6445661418957,6.02029202710673,9.62439171943099,7.39970570716543,10.2249506580764,3.76744011455568,1.63115219478266,2.40786745280742,4.18142095219907,14.8435238933812,9.58051234004803,5.84166657320471,9.86776798876061,4.77848121486145,5.20866763085135,6.65316431113862,10.6908334545219,10.1109422811991,11.2437653897111,6.15620855314444,5.74789597844733,13.9108652825065,14.4417705723094,5.21367853978076,2.43806866313962,1.34140171940727,0.12786256184353,0,0,0.289693037921647,0.795285947051099,0,4.06499713805492,4.65631734671384,6.4119393555982,0.327447688744282,0,0,0.97364218096405,0,0,65.8234123082744,54.3395165241121,49.7753051781617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.22462922052443,3.87780264148325,0,0,0.506522046658319,0.926864265692532,2.0078563452417,1.06400514659507,0.560677600142307,0,2.22000793575444,0.622422070799533,0.808264032418128,0.326923806226917,0.908144565869588,0,1.17160715916898,0.624320153660641,0.570471821544449,0.597794722207204,3.64046945795671,2.5899671098901,2.52811452064047,1.02077085627447,1.59684612505298,1.23990937410919,2.37600571456411,2.71993622206413,0.910161361938026,3.59309070908119,1.17835279767846,3.00284447692714,2.21651292387346,3.5118209670467,1.83892677479412,1.05166641234618,0.794025282120147,2.33206526395521,1.49490172172997,0.635795703478686,0.600182192168805,0.824420233907511,1.28820270022815,0.558350568994769,0.675105328965065,0.68205903612839,2.01947019395292,0.368199594569197,0.646584227275248,3.19508633264953,1.10827308050404,0.847802961552438,0.193260853163297,0,0,0,0,0,0,0,0,1.56449532329816,1.28648187638577,1.38134921352481,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,1.47008711385542,0,0,0.590789906681404,0,0,1.88724591328378,0,0,0.301586917234893,0.277765335475589,0.977424915930974,1.03993478527958,5.77325368101093,1.507095264676,2.93521735589554,0.144366447761074,0,0,0,0,0.246217006087397,0,0.297262324577456,0,0.16798212819886,0.141775097242386,0.179117045405697,0,0.383382679165211,1.47798971368783,0,8.29312462163088,20.0326735249576,6.9433338384509,0.126995788584338,0.381988425558278,0,0,0.102827492703324,0,0,1.68196626518041,0.87192013766656,1.68678057388185,0.258543431515556,3.57656445851882,3.381211010224,1.59562869950922,1.04007436911366,2.05765899409714,1.41849132023278,1.8649552531127,0.714889968290738,0.542621605391443,6.58592269424615,2.60588947434988,0.710783897485092,5.543663110534,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,1.07436577943937,0.784596007954691,10.6396610509041,6.90008239550455,3.85029108839245,0,0,0,0.167516265334349,0,3.74503511973591,11.966458368161,11.603634376209,0.736148950314839,1.00034104211935,0.542530047399471,0.831883446123229,0.713715955188647,0.946214490203608,0.937131319941706,0.902838299183157,0,0,0.664225598535437,0.184369168541703,0.695068915744663,0.391602314925481,0.686286847621712,8.2707210449155,3.23571301227925,11.0996660115582,0,0,1.20956117331872,0.248107807818777,1.68808170616869,0.561320188866147,0,0.511707249066704,0,0,2.15893571323718,0.887808626565635,1.14978018419333,2.59627214591811,0.813472649219715,0,1.80455823272956,0.184161977871793,0.803701137152247,1.27463817604702,0.131124414959424,0.902399225814824,0.231046011313244,3.92174884588428,0,0.527758144464379,0,0,3.02282282542995,1.54227252690289,2.16757150035082,3.51182841698397,0.509752546090077,0,4.701369849165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| ||
|short_description=p5@RUNX2 | |||
}} | }} |
Latest revision as of 01:26, 19 September 2015
Short description: | p5@RUNX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RUNX2_5end |
Coexpression cluster: | C2860_Dendritic_Mast_granulocyte_Neutrophils_gall_anaplastic_pagetoid |
Association with transcript: | 355bp_to_ENST00000359524, ENST00000371432, NM_004348, uc003oxt.2_5end |
EntrezGene: | RUNX2 |
HGNC: | 10472 |
UniProt: | Q13950F8W8U5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 1.80e-16 | 177 |
hematopoietic stem cell | 9.63e-16 | 168 |
leukocyte | 2.35e-15 | 136 |
hematopoietic oligopotent progenitor cell | 3.35e-13 | 161 |
hematopoietic multipotent progenitor cell | 3.35e-13 | 161 |
mature alpha-beta T cell | 2.83e-12 | 18 |
alpha-beta T cell | 2.83e-12 | 18 |
immature T cell | 2.83e-12 | 18 |
mature T cell | 2.83e-12 | 18 |
immature alpha-beta T cell | 2.83e-12 | 18 |
T cell | 4.42e-12 | 25 |
pro-T cell | 4.42e-12 | 25 |
nongranular leukocyte | 4.08e-11 | 115 |
hematopoietic lineage restricted progenitor cell | 2.54e-10 | 120 |
motile cell | 2.93e-10 | 386 |
mesenchymal cell | 3.30e-10 | 354 |
CD8-positive, alpha-beta T cell | 1.27e-09 | 11 |
connective tissue cell | 1.93e-09 | 361 |
myeloid leukocyte | 1.33e-08 | 72 |
myeloid cell | 3.28e-07 | 108 |
common myeloid progenitor | 3.28e-07 | 108 |
lymphoid lineage restricted progenitor cell | 3.30e-07 | 52 |
granulocyte | 4.57e-07 | 8 |
multi fate stem cell | 6.22e-07 | 427 |
lymphocyte | 7.02e-07 | 53 |
common lymphoid progenitor | 7.02e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 6.67e-12 | 98 |
blood island | 6.67e-12 | 98 |
blood | 2.77e-11 | 15 |
haemolymphatic fluid | 2.77e-11 | 15 |
organism substance | 2.77e-11 | 15 |
hemolymphoid system | 7.49e-11 | 108 |
connective tissue | 2.11e-09 | 371 |