FFCP PHASE1:Hg19::chr15:75017862..75017876,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr15:75017862..75017876,- to FFCP PHASE1:Hg19::chr15:75017862..75017876,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1543 | |EntrezGene=1543 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2595 | |HGNC=2595 | ||
|TSSclassifier=strong | |||
|UniProt=P04798,A0N0X8,A4F3V9 | |UniProt=P04798,A0N0X8,A4F3V9 | ||
|association_with_transcript=0bp_to_ENST00000395048,NM_000499,uc002ayp.3,uc002ayq.3,uc010bju.2,uc010bjv.2,uc010bjw.2,uc010bjx.2,uc010bjy.2,uc010bjz.1_5end | |||
|cluster_id=chr15:75017862..75017876,- | |||
|coexpression_cluster_id=C95 | |||
|description=CAGE_peak_1_at_CYP1A1_5end | |||
|id=chr15:75017862..75017876,- | |||
|ontology_enrichment_celltype=CL:0000066!3.61e-30!254;CL:0000223!3.38e-15!59;CL:0002139!4.57e-12!24;CL:0002076!8.71e-12!43;CL:0000115!1.11e-10!35;CL:0000076!1.23e-09!62;CL:0000071!9.69e-09!18;CL:0002546!9.69e-09!18 | |||
|ontology_enrichment_celltype_v019=CL:0002139;9.86e-16;24!CL:0000115;7.43e-12;36!CL:0000071;2.55e-11;18!CL:0002076;5.61e-11;42!CL:0000860;1.85e-08;33!CL:0002057;1.85e-08;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.24e-28,253;CL:0000223,5.47e-17,58;CL:0002139,7.77e-16,24;CL:0000115,2.85e-14,36;CL:0002076,4.27e-13,42;CL:0000071,2.17e-11,18;CL:0002546,2.17e-11,18;CL:0000076,1.40e-10,63;CL:0002078,1.42e-09,45 | |||
|ontology_enrichment_development_v019=CL:0002546;2.55e-11;18!CL:0000223;3.17e-09;58 | |||
|ontology_enrichment_disease=DOID:305!2.00e-14!106;DOID:0050687!9.53e-11!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.79e-11,106;DOID:0050687,4.23e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.22e-15!169;UBERON:0000925!2.22e-15!169;UBERON:0006595!2.22e-15!169;UBERON:0005911!7.14e-12!82;UBERON:0001007!1.75e-11!155;UBERON:0001555!1.75e-11!155;UBERON:0007026!1.75e-11!155;UBERON:0000077!9.09e-11!130;UBERON:0004921!4.03e-09!129;UBERON:0004185!4.03e-09!129;UBERON:0001986!9.69e-09!18;UBERON:0004638!9.69e-09!18;UBERON:0004852!9.69e-09!18;UBERON:0000487!8.82e-08!22;UBERON:0003929!2.83e-07!54;UBERON:0001004!3.36e-07!72;UBERON:0001041!3.36e-07!98;UBERON:0000344!5.05e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;2.55e-11;18!UBERON:0001986;2.55e-11;18!UBERON:0004852;2.55e-11;18!UBERON:0000487;1.81e-09;22!UBERON:0000490;1.89e-08;33!UBERON:0006914;1.09e-07;25!UBERON:0002423;5.01e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005911,5.88e-13,82;UBERON:0004119,1.01e-12,160;UBERON:0000925,1.01e-12,160;UBERON:0006595,1.01e-12,160;UBERON:0004638,2.17e-11,18;UBERON:0001986,2.17e-11,18;UBERON:0004852,2.17e-11,18;UBERON:0000487,1.52e-09,22;UBERON:0001007,1.60e-09,145;UBERON:0001555,1.60e-09,145;UBERON:0007026,1.60e-09,145;UBERON:0006914,9.41e-08,25;UBERON:0004921,1.56e-07,118;UBERON:0003929,1.82e-07,54;UBERON:0009497,6.41e-07,25;UBERON:0000015,6.41e-07,25;UBERON:0002423,6.41e-07,25;UBERON:0006235,6.41e-07,25;UBERON:0004161,6.41e-07,25 | |||
|phase1_expression=0.54503513781167,0.856402095563933,0.281908808191942,0,0.446961094427288,0,0,0,0,0.982935746006035,2.79120467188971,0,0,0,0,0,0,0,0.487932798790507,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,1.08371286321253,4.59710612239464,2.71085326900425,2.58827807116751,0,0,0,0,0,0.217010870715852,0,0,0,6.25212426752128,5.29026321164333,1.69808842831471,1.16214518452842,4.11167888021826,3.40677007984614,36.8246262172353,48.1582128274709,27.1954564371873,0,0.645484683583826,1.35426486594342,4.32957380947991,8.46009065179322,4.49446968890169,0.612167784741805,3.53021929783703,3.83602275479425,59.0433827334222,53.4562602425973,44.3273740554002,0,0,0,24.3711205299041,25.5526630025899,17.5922964211144,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83905144929746,0,0,0,2.00538822393312,0,0,0,4.86747014957566,4.81219585971549,0,1.38175008892924,1.15921234294021,0,0,0,0.566546713487831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0.144846518960824,0,0,0,0,0,25.999346486296,25.8649654687705,18.9100065820059,0,0,0,0,0,0,16.8948046261699,2.58070378531837,3.81854551768354,0,2.09749718104953,8.80377734208216,8.77778859454604,5.94358546089456,3.91342888955381,1.33888245105868,23.7669297094397,7.60272105718513,70.2898725738728,8.45625084795498,2.43042584364528,2.50039239195423,3.36794058939255,1.91439516821648,4.5994991239765,5.69559395740877,2.19842092716489,0,0,15.6993858771312,0,2.27934920996244,0.132409180813219,1.14734648299525,0,1.12135520028461,1.06748995729705,0.24666754841716,0.311211035399766,0,0.980771418680752,0,0,0,0.312160076830321,1.1409436430889,0,0,0,0.140450806702248,0.204154171254893,0,0,0,0,1.82032272387605,0,0.505008341862199,0,0,0,0.30648779579902,0,0.340296549480063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.25173876959253,10.3643525824517,4.58887352622406,0.975789649036763,0.132529768321485,4.4153698290417,6.84162963101445,3.02785021050754,0,0,0,1.38134921352481,0,0,0.591534000199219,0,0.723033089650446,0.220587945464788,0.217879444092406,0.71181185733329,1.48314438976181,0.588664395376038,2.30848294167834,10.3341763647451,4.20725321410337,0,0,7.60530208930985,30.4676437170064,2.36315962672562,0,36.2815893702185,0,2.74375713521564,4.49607013030478,0.904760751704678,8.51813695458472,0,0,0,0,0,25.5528612537101,28.7051017797499,96.4588551829413,0.790204397959275,1.71697232418975,0,0,0,56.2403003920662,4.53551746136921,8.50650583454319,0,0.290633938513962,0.766765358330422,0.492663237895943,1.76096868026452,0.207328115540772,0,0,0.126995788584338,0,0,0,0,0,0.285826432630578,0,0,0,0,0,3.381211010224,0,0,0,0,0,0,0,0,2.60588947434988,0,0,0,0.871533458600294,0,0,0,0,0,0,0,0,0,0,1.79336230389644,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,3.32870879020994,0.604780586659361,0,0,0,0,0,0,0,0,0,0,0,0,76.8666099402717,14.6369723321398,5.15653538041019,0,0,0,0,0.15403067420883,0,0,0.527758144464379,6.8240030442538,0.680374821106063,1.72732732881711,1.54227252690289,0,0,0,0,0,0,0,0.769350375349168,0,0.325378394664303,12.6740444326698,0,0,5.74265537996172,15.6014459048765,0,0,0,0,0,0,0,0,0,17.6854859436247,8.45636296406467,4.97689578728878,5.0578890427775,0,0,0,0,0,0,0.18532421910392,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,1.58510321173008,0,0,0,0,0,0.141405431953713,0,0.551365343546124,0,1.75380354101505,0,1.31178950409327,0,0,0,0,0,0,0,0,0,0,0,4.61866141082458,3.35151137767894,2.17781969722645,12.803556905642,15.9286987888355,11.7930032967338,9.75546337780687,8.04031900724358,0,0,0,0,0,0,0,0,0,0,3.43056302373444,0,0,0,0,2.19537308576098,0.191505370132367,0,0,3.36956613736151,0,0,0,4.06300266723848,0,0.201799707191048,0,1.03051603426729,0,0,0,1.56310476321632,0,0,0,0,0,55.9550215820577,1.46508179271894,0,0,0,0,32.9630795724229,0,0,0,0,0,0,18.3308149190984,0.828851746593443,1.51159648712566,0.409074730008619,0.369254416383208,0.311039587661807,1.25815691606258,1.07412704805365,2.04628948090749,6.80639498894842,0,0,2.90799823828566,0,0,35.1577477465065,22.2148399990337,1.44999915086959,5.91725931084598,3.81380475439149,41.3678443093889,0,0,0,0,0,0,0,0.295547618953547,7.89787429754301,0,0.139423744278603,1.76985594558733,0.341826167541004,0.23056390438806,2.78248697670294,1.95565269459615,0.638002319463839,9.61774730719554,0,0,0.470940769185074,0.332423363800313,0,0,0,0,1.27149263184303,2.10998064528027,33.6259584807844,30.8149695725991,0.216388639742091,8.95735737970654,0.707660516026713,0,0,0,0,0.741412462787447,0,0,0,103.310918796143,0,11.4429476826323,0,0.30607276163049,34.2471261586405,1.50323419414493,0.622129148383483,0.664653872707185,1.98595173525299,2.5114633472578,0,0,12.2033712251562,114.896546777857,3.72371110174635,0,13.4539534546363,0,2.80593360738347,6.28568126941196,5.3375047084586,3.20063754411784,0,0,0,0.397429223405979,0.443175571691151,33.0481836821817,76.7119909807178,33.7255731688177,0,0.72045208577053,0,0.343189995723929,0.14405479798815,0.124252535565433,25.2192617039971,0,0,0.203996435272644,0,0,0,0,0,0,10.892013649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| 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| ||
|short_description=p1@CYP1A1 | |||
}} | }} |
Latest revision as of 01:37, 19 September 2015
Short description: | p1@CYP1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CYP1A1_5end |
Coexpression cluster: | C95_lung_aorta_trachea_penis_Alveolar_throat_endometrioid |
Association with transcript: | 0bp_to_ENST00000395048, NM_000499, uc002ayp.3, uc002ayq.3, uc010bju.2, uc010bjv.2, uc010bjw.2, uc010bjx.2, uc010bjy.2, uc010bjz.1_5end |
EntrezGene: | CYP1A1 |
HGNC: | 2595 |
UniProt: | P04798A0N0X8A4F3V9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.24e-28 | 253 |
endodermal cell | 5.47e-17 | 58 |
endothelial cell of vascular tree | 7.77e-16 | 24 |
endothelial cell | 2.85e-14 | 36 |
endo-epithelial cell | 4.27e-13 | 42 |
blood vessel endothelial cell | 2.17e-11 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.17e-11 | 18 |
squamous epithelial cell | 1.40e-10 | 63 |
meso-epithelial cell | 1.42e-09 | 45 |
Ontology term | p-value | n |
---|---|---|
endo-epithelium | 5.88e-13 | 82 |
endoderm-derived structure | 1.01e-12 | 160 |
endoderm | 1.01e-12 | 160 |
presumptive endoderm | 1.01e-12 | 160 |
blood vessel endothelium | 2.17e-11 | 18 |
endothelium | 2.17e-11 | 18 |
cardiovascular system endothelium | 2.17e-11 | 18 |
simple squamous epithelium | 1.52e-09 | 22 |
digestive system | 1.60e-09 | 145 |
digestive tract | 1.60e-09 | 145 |
primitive gut | 1.60e-09 | 145 |
squamous epithelium | 9.41e-08 | 25 |
subdivision of digestive tract | 1.56e-07 | 118 |
gut epithelium | 1.82e-07 | 54 |
epithelium of foregut-midgut junction | 6.41e-07 | 25 |
anatomical boundary | 6.41e-07 | 25 |
hepatobiliary system | 6.41e-07 | 25 |
foregut-midgut junction | 6.41e-07 | 25 |
septum transversum | 6.41e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.79e-11 | 106 |
cell type cancer | 4.23e-08 | 143 |