FFCP PHASE1:Hg19::chr12:54117373..54117378,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57658 | |EntrezGene=57658 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=29306 | |HGNC=29306 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=71bp_to_ENST00000547677_5end | |association_with_transcript=71bp_to_ENST00000547677_5end | ||
|cluster_id=chr12:54117373..54117378,- | |||
|coexpression_cluster_id=C14 | |||
|description=CAGE_peak_9_at_CALCOCO1_5end | |description=CAGE_peak_9_at_CALCOCO1_5end | ||
|id=chr12:54117373..54117378,- | |id=chr12:54117373..54117378,- | ||
|ontology_enrichment_celltype=CL:0000764!4.56e-08!2;CL:0000765!4.56e-08!2;CL:0000050!4.56e-08!2;CL:0000038!4.56e-08!2;CL:0000558!4.56e-08!2;CL:0000547!4.56e-08!2;CL:0000549!4.56e-08!2;CL:0000550!4.56e-08!2;CL:0000552!4.56e-08!2 | |ontology_enrichment_celltype=CL:0000764!4.56e-08!2;CL:0000765!4.56e-08!2;CL:0000050!4.56e-08!2;CL:0000038!4.56e-08!2;CL:0000558!4.56e-08!2;CL:0000547!4.56e-08!2;CL:0000549!4.56e-08!2;CL:0000550!4.56e-08!2;CL:0000552!4.56e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:0000764;2.45e-36;2!CL:0000558;2.45e-36;2!CL:0002591;4.28e-19;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000764,3.52e-36,2;CL:0000765,3.52e-36,2;CL:0000050,3.52e-36,2;CL:0000038,3.52e-36,2;CL:0000558,3.52e-36,2;CL:0000547,3.52e-36,2;CL:0000549,3.52e-36,2;CL:0000550,3.52e-36,2;CL:0000552,3.52e-36,2;CL:0002591,3.91e-19,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!4.09e-14!15;UBERON:0000179!4.09e-14!15;UBERON:0000463!4.09e-14!15;UBERON:0007497!1.46e-07!2;UBERON:0003643!1.46e-07!2;UBERON:0003504!1.46e-07!2;UBERON:0003469!1.46e-07!2;UBERON:0003496!1.46e-07!2;UBERON:0004797!1.46e-07!2;UBERON:0002012!1.46e-07!2;UBERON:0008886!1.46e-07!2;UBERON:0007303!1.46e-07!2;UBERON:0002061!1.46e-07!2;UBERON:0005432!1.46e-07!2;UBERON:0004363!1.46e-07!2 | |ontology_enrichment_uberon=UBERON:0000178!4.09e-14!15;UBERON:0000179!4.09e-14!15;UBERON:0000463!4.09e-14!15;UBERON:0007497!1.46e-07!2;UBERON:0003643!1.46e-07!2;UBERON:0003504!1.46e-07!2;UBERON:0003469!1.46e-07!2;UBERON:0003496!1.46e-07!2;UBERON:0004797!1.46e-07!2;UBERON:0002012!1.46e-07!2;UBERON:0008886!1.46e-07!2;UBERON:0007303!1.46e-07!2;UBERON:0002061!1.46e-07!2;UBERON:0005432!1.46e-07!2;UBERON:0004363!1.46e-07!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.61e-76;15!UBERON:0000179;2.61e-76;15!UBERON:0000463;2.61e-76;15!UBERON:0002390;1.14e-33;32!UBERON:0002193;2.73e-19;42!UBERON:0000078;3.13e-10;2!UBERON:0002012;3.13e-10;2!UBERON:0008886;3.13e-10;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.25e-76,15;UBERON:0000179,2.25e-76,15;UBERON:0000463,2.25e-76,15;UBERON:0007023,3.23e-15,114;UBERON:0004535,6.65e-13,109;UBERON:0001009,1.53e-12,112;UBERON:0002390,2.78e-11,98;UBERON:0003061,2.78e-11,98;UBERON:0000078,2.99e-10,2;UBERON:0007497,2.99e-10,2;UBERON:0003643,2.99e-10,2;UBERON:0003504,2.99e-10,2;UBERON:0003469,2.99e-10,2;UBERON:0003496,2.99e-10,2;UBERON:0002012,2.99e-10,2;UBERON:0008886,2.99e-10,2;UBERON:0007303,2.99e-10,2;UBERON:0002061,2.99e-10,2;UBERON:0005432,2.99e-10,2;UBERON:0004363,2.99e-10,2;UBERON:0002193,3.35e-10,108;UBERON:0004145,2.97e-07,3 | |||
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| ||
|short_description=p9@CALCOCO1 | |short_description=p9@CALCOCO1 | ||
}} | }} |
Latest revision as of 03:52, 19 September 2015
Short description: | p9@CALCOCO1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_CALCOCO1_5end |
Coexpression cluster: | C14_Whole_blood_Reticulocytes_liver_Neutrophils_Eosinophils_spleen |
Association with transcript: | 71bp_to_ENST00000547677_5end |
EntrezGene: | CALCOCO1 |
HGNC: | 29306 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
erythroid lineage cell | 3.52e-36 | 2 |
erythroblast | 3.52e-36 | 2 |
megakaryocyte-erythroid progenitor cell | 3.52e-36 | 2 |
erythroid progenitor cell | 3.52e-36 | 2 |
reticulocyte | 3.52e-36 | 2 |
proerythroblast | 3.52e-36 | 2 |
basophilic erythroblast | 3.52e-36 | 2 |
polychromatophilic erythroblast | 3.52e-36 | 2 |
orthochromatic erythroblast | 3.52e-36 | 2 |
smooth muscle cell of the pulmonary artery | 3.91e-19 | 1 |
Ontology term | p-value | n |
---|---|---|
blood | 2.25e-76 | 15 |
haemolymphatic fluid | 2.25e-76 | 15 |
organism substance | 2.25e-76 | 15 |
adult organism | 3.23e-15 | 114 |
cardiovascular system | 6.65e-13 | 109 |
circulatory system | 1.53e-12 | 112 |
hematopoietic system | 2.78e-11 | 98 |
blood island | 2.78e-11 | 98 |
mixed ectoderm/mesoderm/endoderm-derived structure | 2.99e-10 | 2 |
developing epithelial placode | 2.99e-10 | 2 |
respiratory system arterial blood vessel | 2.99e-10 | 2 |
respiratory system blood vessel | 2.99e-10 | 2 |
respiratory system artery | 2.99e-10 | 2 |
head blood vessel | 2.99e-10 | 2 |
pulmonary artery | 2.99e-10 | 2 |
pulmonary vascular system | 2.99e-10 | 2 |
pharyngeal vasculature | 2.99e-10 | 2 |
truncus arteriosus | 2.99e-10 | 2 |
aortic sac | 2.99e-10 | 2 |
pharyngeal arch artery | 2.99e-10 | 2 |
hemolymphoid system | 3.35e-10 | 108 |
outflow tract | 2.97e-07 | 3 |