FFCP PHASE1:Hg19::chr12:54393880..54393962,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3225 | |EntrezGene=3225 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5130 | |HGNC=5130 | ||
|TSSclassifier=strong | |||
|UniProt=P31274 | |UniProt=P31274 | ||
|association_with_transcript=0bp_to_ENST00000303450_5end | |association_with_transcript=0bp_to_ENST00000303450_5end | ||
|cluster_id=chr12:54393880..54393962,+ | |||
|description=CAGE_peak_1_at_HOXC9_5end | |description=CAGE_peak_1_at_HOXC9_5end | ||
|id=chr12:54393880..54393962,+ | |id=chr12:54393880..54393962,+ | ||
|ontology_enrichment_celltype=CL:0000136!1.64e-09!15;CL:0000055!5.99e-08!180;CL:0002334!2.26e-07!12;CL:0000325!3.42e-07!39;CL:0000035!3.66e-07!20 | |ontology_enrichment_celltype=CL:0000136!1.64e-09!15;CL:0000055!5.99e-08!180;CL:0002334!2.26e-07!12;CL:0000325!3.42e-07!39;CL:0000035!3.66e-07!20 | ||
|ontology_enrichment_celltype_v019=CL:0000136;4.55e-09;13!CL:0002334;2.22e-08;12!CL:0002570;2.06e-07;8!CL:1000507;3.24e-07;10!CL:1000494;3.24e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,9.59e-11,15;CL:0002334,2.81e-08,12;CL:0002570,1.86e-07,8;CL:1000507,3.60e-07,10;CL:1000494,3.60e-07,10 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!6.03e-11!143;DOID:14566!8.12e-10!239;DOID:162!3.43e-09!235 | |ontology_enrichment_disease=DOID:0050687!6.03e-11!143;DOID:14566!8.12e-10!239;DOID:162!3.43e-09!235 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,1.13e-09,239;DOID:0050687,1.56e-09,143;DOID:162,3.35e-09,235 | |||
|ontology_enrichment_uberon=UBERON:0001013!6.36e-10!14;UBERON:0002199!1.15e-08!45;UBERON:0002416!1.15e-08!45;UBERON:0002113!2.47e-08!27;UBERON:0003918!2.47e-08!27;UBERON:0005095!2.47e-08!27;UBERON:0007687!2.47e-08!27;UBERON:0000489!1.60e-07!32 | |ontology_enrichment_uberon=UBERON:0001013!6.36e-10!14;UBERON:0002199!1.15e-08!45;UBERON:0002416!1.15e-08!45;UBERON:0002113!2.47e-08!27;UBERON:0003918!2.47e-08!27;UBERON:0005095!2.47e-08!27;UBERON:0007687!2.47e-08!27;UBERON:0000489!1.60e-07!32 | ||
|ontology_enrichment_uberon_v019=UBERON:0001013;3.63e-11;14!UBERON:0002113;5.67e-09;24!UBERON:0011143;5.67e-09;24!UBERON:0001134;1.92e-08;16!UBERON:0002036;1.92e-08;16!UBERON:0004905;1.98e-07;8!UBERON:0000982;1.98e-07;8!UBERON:0004770;1.98e-07;8!UBERON:0000489;2.85e-07;29!UBERON:0004211;3.24e-07;10!UBERON:0009773;3.24e-07;10!UBERON:0001231;3.24e-07;10!UBERON:0004810;3.24e-07;10!UBERON:0002199;4.64e-07;46!UBERON:0002416;4.64e-07;46!UBERON:0004457;8.66e-07;9!UBERON:0000042;8.66e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001013,3.20e-11,14;UBERON:0002199,1.40e-10,46;UBERON:0002416,1.40e-10,46;UBERON:0002113,1.15e-08,26;UBERON:0003918,1.15e-08,26;UBERON:0011143,1.15e-08,26;UBERON:0005095,1.15e-08,26;UBERON:0007687,1.15e-08,26;UBERON:0002097,9.41e-08,41;UBERON:0004905,1.96e-07,8;UBERON:0000982,1.96e-07,8;UBERON:0004770,1.96e-07,8;UBERON:0004810,3.60e-07,10;UBERON:0000489,4.17e-07,31 | |||
|phase1_expression=12.3541297903979,10.0627246228762,6.90676580070259,7.00513088471913,4.91657203870017,6.10636966870258,12.6649939084155,12.6343974685366,11.4921676407929,0.491467873003018,0.697801167972428,0,0,29.9514574163313,8.61633176892581,1.34465029290355,1.80808358407193,0,0.487932798790507,0,0,0,0,0,0.125542639594803,0.0764134057479513,0,0.236132343941038,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,3.2529523714611,6.51739283826656,9.41502373245354,5.5670016293577,0.973269740605272,0,0,0.175669571386252,2.0956652079634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.81980521976403,0.760272105718513,0.732186172644509,0,0,0,0,0,0,0,0.916008719652036,0,0,0,13.9152146474689,0.506522046658319,1.05927344650575,0,1.41867352879343,0,0,0,0,0,0,0,0,0,0,0,14.4965220135247,7.04606991862589,3.72307772046703,3.79217178096071,0,0,0,0,0,17.2930658768225,22.2771623963034,0,0,0,0,0,0,0.226864366320042,0.538168907066586,2.56268866582281,4.4505699243508,2.40072876867522,1.23663035086127,6.44101350114073,11.1670113798954,11.6455669246474,16.7591648877262,1.00973509697646,4.23429533754577,0,1.42003837006646,1.5112814734146,4.57813599238317,0,0.272746120590835,0,0,0,0,0.310983165046111,0,0,0,0,0,7.89425477654364,8.66255378003503,3.785817601275,3.54027849164014,3.37415441836875,2.97793726377464,3.05031221729369,2.60997681022206,3.7752766284846,4.31687223275761,2.69323009862473,0,2.80483547606892,0,0,0,0,0.590789906681404,0,0,0,4.49976170175365,1.1240175325762,2.91534019993729,0,0,0,0,0,0,0.144366447761074,0,0,3.1608175918371,3.43394464837949,0,0,0,0,0.335964256397719,0,2.95543124919399,3.77824120068151,3.06706143332169,0,0,0.207328115540772,0,0.12624243342638,6.66727890067775,12.9876064689814,8.20522130470329,6.84289784090821,4.93571964975953,5.70651809903443,15.7204537946818,0,0,0,12.5393564285044,25.0359512096318,9.298330278116,1.06375246633948,0,8.48784335065069,4.25547396069835,7.45982101245078,0.142977993658148,11.3950537132203,12.3486050517115,8.46914079163711,0.355391948742546,9.50342247520115,0.602878754119172,0.871533458600294,2.0994328148232,0,0,0,0,0,1.42636905040718,9.12122232005749,6.57524232161227,12.5342674267927,0,0,0,0,0,0,0,0,0,0,0,0,33.8628517144826,45.0153468953709,9.22301080579101,0,0,0,0,2.10662269809403,27.2889004867182,8.27784570340039,7.97070718242524,1.65932251687533,1.47702144595741,0,0,0,0,0,0,0,0.604780586659361,15.1345762769454,5.67809301165831,8.70046292742528,9.35415789566617,17.3980464682679,5.30817939773905,4.45254199334973,15.2667596864629,11.186388694727,10.34802165774,1.03850885836724,8.01851611373719,0,1.80455823272956,0.460404944679482,0,0,0,2.25599806453706,5.2370429231002,13.3339460760065,8.76835347919564,9.18299171368019,0,0.170093705276516,4.10240240594065,3.08454505380579,22.2176078785959,27.0912477881621,5.60727800699084,4.15538004464362,8.73111543416495,0,0,0,0,0,0.103041011647722,4.57847324091717,5.44562699475881,12.0595762979196,1.30012049207304,1.6068392984416,17.7874121657504,1.54048617114644,1.68854042198743,4.54860689198951,13.749791343139,10.4412019618245,7.67039646744908,14.0670616321845,0,0,0,0,0,0.31481234683064,0,6.16067160352178,0.532306030317022,0,0.18532421910392,0,0,0.316379424718726,0,0,0,0,0,0.179872457583315,0.823611089208164,0.117812402345686,1.61745985258653,0,0,0,10.7233935437765,4.22600587027022,0,0,0,0,0,0,0,0.655894752046633,7.10186319369464,3.717881977197,2.25356482025793,23.3760504092604,10.8073945114433,7.133421029625,0,5.69990615303693,8.23237232399755,0,0,0,0,0,0.282431402330337,2.58303223602738,0,0.443430153536676,0.918893600827838,0,0,0,0,0,0,0,0,13.1393607486792,1.92495971052672,1.71528151186722,0,0,0,0,0,0,0,0,0,0,0.156679895773023,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,11.4276379832077,3.15537356548735,0,3.40963376167696,0,0.593929361665277,0,0,0,0.222617410045812,0,8.23389091699175,1.59398390600856,0.276283915531148,7.80991518348256,6.85200172764437,0,0,0,0,0,0.493217028184668,0,2.22273980289274,0,0,0,2.86470537193757,4.89775999978696,1.44999915086959,0.796554137998498,0,1.18193840883968,3.10269035917318,3.49925536059905,14.0636245895967,0,0,0,0,0,0,2.39664619741778,1.25481369850743,0.384751292518985,0.113942055847001,2.53620294826866,3.2312751987518,4.0199527611143,0.638002319463839,1.74035427463538,0,0,0,0,2.48155226678899,3.13700054908383,4.19553967439607,1.3282761290693,0,0,0.163232808159148,0,9.08832286916783,0,0.0884575645033392,0,13.343450790628,10.9971905662388,9.81566325351281,0,0,0,0,0.391329237864179,0,0.394584402849391,2.41981432097328,0.30607276163049,0,14.1304014249623,28.3068762514485,2.65861549082874,3.64091151463049,0.941798755221676,3.58417289318877,0.569219092059585,5.54698692052555,0,0,2.26353937109047,5.06707337901887,22.7021562862534,5.70862354605602,6.65112785484289,5.00904288024576,0.0969890164884194,3.79501344773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| ||
|short_description=p1@HOXC9 | |short_description=p1@HOXC9 | ||
}} | }} |
Latest revision as of 04:47, 19 September 2015
Short description: | p1@HOXC9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HOXC9_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000303450_5end |
EntrezGene: | HOXC9 |
HGNC: | 5130 |
UniProt: | P31274 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 9.59e-11 | 15 |
preadipocyte | 2.81e-08 | 12 |
mesenchymal stem cell of adipose | 1.86e-07 | 8 |
kidney tubule cell | 3.60e-07 | 10 |
nephron tubule epithelial cell | 3.60e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
adipose tissue | 3.20e-11 | 14 |
integument | 1.40e-10 | 46 |
integumental system | 1.40e-10 | 46 |
kidney | 1.15e-08 | 26 |
kidney mesenchyme | 1.15e-08 | 26 |
upper urinary tract | 1.15e-08 | 26 |
kidney rudiment | 1.15e-08 | 26 |
kidney field | 1.15e-08 | 26 |
skin of body | 9.41e-08 | 41 |
articulation | 1.96e-07 | 8 |
skeletal joint | 1.96e-07 | 8 |
articular system | 1.96e-07 | 8 |
nephron tubule epithelium | 3.60e-07 | 10 |
cavitated compound organ | 4.17e-07 | 31 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 1.13e-09 | 239 |
cell type cancer | 1.56e-09 | 143 |
cancer | 3.35e-09 | 235 |