FFCP PHASE1:Hg19::chr12:57625985..57625997,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6472 | |EntrezGene=6472 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10852 | |HGNC=10852 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-246bp_to_ENST00000557529_5end | |association_with_transcript=-246bp_to_ENST00000557529_5end | ||
|cluster_id=chr12:57625985..57625997,+ | |||
|description=CAGE_peak_8_at_SHMT2_5end | |description=CAGE_peak_8_at_SHMT2_5end | ||
|id=chr12:57625985..57625997,+ | |id=chr12:57625985..57625997,+ | ||
|ontology_enrichment_celltype=CL:0000548!5.53e-20!679;CL:0000004!5.53e-20!679;CL:0000255!5.53e-20!679;CL:0000012!4.23e-19!682;CL:0000144!4.38e-12!625;CL:0000003!7.79e-12!722;CL:0000055!3.12e-10!180;CL:0002371!3.73e-10!591;CL:0002321!3.87e-09!248;CL:0000220!4.10e-09!246;CL:0000063!3.28e-08!578 | |ontology_enrichment_celltype=CL:0000548!5.53e-20!679;CL:0000004!5.53e-20!679;CL:0000255!5.53e-20!679;CL:0000012!4.23e-19!682;CL:0000144!4.38e-12!625;CL:0000003!7.79e-12!722;CL:0000055!3.12e-10!180;CL:0002371!3.73e-10!591;CL:0002321!3.87e-09!248;CL:0000220!4.10e-09!246;CL:0000063!3.28e-08!578 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!4.04e-09!239;DOID:162!3.21e-08!235 | |ontology_enrichment_disease=DOID:14566!4.04e-09!239;DOID:162!3.21e-08!235 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0.363356758541113,2.78330681058278,0.845726424575827,1.0007329835313,1.34088328328186,1.74467704820074,0,0,0.261185628199839,2.21160542851358,3.48900583986214,0,0,0.247532705920093,0.331397375727916,1.34465029290355,0.602694528023977,0,0.487932798790507,0.123121058076788,0.816002764977012,0.940364164434263,0.572471974262113,0.547497700291537,0.502170558379211,1.75750833220288,0.656804715599566,0.865818594450472,0,0,0,0.919421224478927,1.8072355126695,4.80680213216824,0.232401601740905,0.284338464974843,0,0,0,0,0,0,0,0.290796477559129,0.377875943688809,0,0.232429036905685,0,0,0.28769239232215,0.768482119587302,0.47296445977717,0,0.645484683583826,0,0.752969358170419,1.09162460023138,0,1.53041946185451,0.962787081228281,0,0,0,0,0.290209238628584,0,0,0.251248665256743,1.0429658368404,0,0.605399502633369,0,0.632924774881769,0.211255286311942,0.212604299965044,0.209658645508376,0.336985893439485,0.150176892841506,0,0.285012743741249,0,0,0,0,0.889509253863555,0.426730222566507,0.800791974072025,0,0,0,0,0,0.382273228125229,0,0,0,0,0.393010762749165,0.205601498999509,0,0.32592226663359,0,0,0.222820913770347,0,0,0,0.896639238079726,0.780356085359269,0.493313713811028,1.65810010671509,0,0,0,0,0.113309342697566,0,0,0,0.318565414324097,0,0,0,0,0,0,0,0,0.267440195783507,0,2.43806866313962,0.670700859703636,0.255725123687061,1.44575660953827,0,1.01392563272577,0,0,0,0.886917589850256,0.263504357079378,0,1.45718115317017,2.96627554227544,0,0.696518949197069,0.531831842075461,0.238490624305342,0,0,0.198762407366705,0,0,0,0,1.6507082516404,0.417989933073621,0.516833518338658,0.35576626268671,0.33472061276467,0,0.760272105718513,0,0.735326160691737,2.43042584364528,0.357198913136319,0.22452937262617,0.225222960966644,0,0,0.549605231791222,0,0,0,0.993943903390637,0.633152558322899,0,0.286836620748814,0.709336764396714,2.24271040056923,1.06748995729705,0.98667019366864,0.311211035399766,1.34710672069688,0.326923806226917,0.151357427644931,0.576175924479999,0.70296429550139,0,0,0.597794722207204,0.939475989150119,0.971237666208789,0.98315564691574,0.204154171254893,0.982674538494144,0.929932030581889,0,2.22540236350701,0,0.718618141816238,0.336672227908132,1.50142223846357,0,0.438977620880838,0.612975591598039,0.600952235626387,0.340296549480063,0.358779271377724,0.427114777637135,0.635795703478686,0.300091096084402,0.618315175430633,0.772921620136887,1.30281799432113,0.168776332241266,0.389748020644795,0.757301322732344,0.276149695926898,0.969876340912871,0,0.201504196455281,0.169560592310488,0,0.545492241181669,0,0.365921118388786,0.265059536642971,1.62671520017326,0.932949495138334,1.51392510525377,0,1.56449532329816,0,0,0,0,0.354920400119532,0.505754070234305,0.723033089650446,0.992645754591546,1.08939722046203,0.474541238222193,1.48314438976181,0.392442930250692,0,0,2.80483547606892,0,1.47008711385542,0,1.96565443335525,0,1.7658523976586,0.491953754172454,0.343135620597051,0.109750285408626,3.37205259772859,1.10581869652794,0.462942225792648,1.62904152655162,1.03993478527958,0,0.115930404975077,0.117408694235822,0.144366447761074,0,0.570762456703795,1.58040879591855,0.858486162094873,0,0.234004265139238,0.297262324577456,0,0.16798212819886,0.141775097242386,0,0,0.383382679165211,0,0.264145302039678,0.207328115540772,0,0.25248486685276,0.126995788584338,0.763976851116555,0,1.71072446022705,1.23392991243988,0,0.571652865261156,0.224262168690721,1.30788020649984,0.2933531432838,0.258543431515556,3.57656445851882,0.845302752556,1.06375246633948,1.04007436911366,0.771622122786426,0,0.532844358032199,0.142977993658148,1.08524321078289,0,0,0,1.58390374586686,0,0,0,0,0,0,0.958499421966331,1.14861935834114,0,0.868687840005475,1.02738161275192,0,0.896681151948218,0,0.215627574859517,0,0,0,0,0.335032530668698,0.637938751653163,0.749007023947182,0,0,0,0.500170521059677,0.542530047399471,0.415941723061614,3.39015078714607,0.946214490203608,0.585707074963566,0,0,3.10419213877515,0.664225598535437,0.184369168541703,0.173767228936166,0,0.343143423810856,0,0,0.106727557803444,0.303127571446259,0,0.604780586659361,1.24053903909388,0.920771839728375,2.80660094433074,0.640695746278505,0.511707249066704,0.965123526861645,0,1.69630663182921,0.710246901252508,0.0821271560138091,1.03850885836724,0.581051892299796,0.120859449591622,1.20303882181971,0.920809889358963,0.459257792658427,1.82091168006717,1.04899531967539,0.902399225814824,0.308061348417659,0,0,0.105551628892876,0,0.510281115829547,0.431831832204279,1.54227252690289,0.270946437543853,0.501689773854853,0.254876273045038,0.831076008928724,0.447749509444357,0,0,0,0.328014645699706,0.325378394664303,0.309123034943167,0.54941678891006,0.082509499920588,0.574265537996172,1.30012049207304,0,0.48335359146061,0.770243085573222,1.22802939780904,1.37836572484531,0.644521469209642,1.45016693914229,0.596586391912706,0.178064071293475,0.495854746082934,1.15314040419064,0,0.708104465988849,1.85938219718914,0.31481234683064,0,0.616067160352178,0.532306030317022,0,0.37064843820784,1.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|phase1_expression=0.363356758541113,2.78330681058278,0.845726424575827,1.0007329835313,1.34088328328186,1.74467704820074,0,0,0.261185628199839,2.21160542851358,3.48900583986214,0,0,0.247532705920093,0.331397375727916,1.34465029290355,0.602694528023977,0,0.487932798790507,0.123121058076788,0.816002764977012,0.940364164434263,0.572471974262113,0.547497700291537,0.502170558379211,1.75750833220288,0.656804715599566,0.865818594450472,0,0,0,0.919421224478927,1.8072355126695,4.80680213216824,0.232401601740905,0.284338464974843,0,0,0,0,0,0,0,0.290796477559129,0.377875943688809,0,0.232429036905685,0,0,0.28769239232215,0.768482119587302,0.47296445977717,0,0.645484683583826,0,0.752969358170419,1.09162460023138,0,1.53041946185451,0.962787081228281,0,0,0,0,0.290209238628584,0,0,0.251248665256743,1.0429658368404,0,0.605399502633369,0,0.632924774881769,0.211255286311942,0.212604299965044,0.209658645508376,0.336985893439485,0.150176892841506,0,0.285012743741249,0,0,0,0,0.889509253863555,0.426730222566507,0.800791974072025,0,0,0,0,0,0.382273228125229,0,0,0,0,0.393010762749165,0.205601498999509,0,0.32592226663359,0,0,0.222820913770347,0,0,0,0.896639238079726,0.780356085359269,0.493313713811028,1.65810010671509,0,0,0,0,0.113309342697566,0,0,0,0.318565414324097,0,0,0,0,0,0,0,0,0.267440195783507,0,2.43806866313962,0.670700859703636,0.255725123687061,1.44575660953827,0,1.01392563272577,0,0,0,0.886917589850256,0.263504357079378,0,1.45718115317017,2.96627554227544,0,0.696518949197069,0.531831842075461,0.238490624305342,0,0,0.198762407366705,0,0,0,0,1.6507082516404,0.417989933073621,0.516833518338658,0.35576626268671,0.33472061276467,0,0.760272105718513,0,0.735326160691737,2.43042584364528,0.357198913136319,0.22452937262617,0.225222960966644,0,0,0.549605231791222,0,0,0,0.993943903390637,0.633152558322899,0,0.286836620748814,0.709336764396714,2.24271040056923,1.06748995729705,0.98667019366864,0.311211035399766,1.34710672069688,0.326923806226917,0.151357427644931,0.576175924479999,0.70296429550139,0,0,0.597794722207204,0.939475989150119,0.971237666208789,0.98315564691574,0.204154171254893,0.982674538494144,0.929932030581889,0,2.22540236350701,0,0.718618141816238,0.336672227908132,1.50142223846357,0,0.438977620880838,0.612975591598039,0.600952235626387,0.340296549480063,0.358779271377724,0.427114777637135,0.635795703478686,0.300091096084402,0.618315175430633,0.772921620136887,1.30281799432113,0.168776332241266,0.389748020644795,0.757301322732344,0.276149695926898,0.969876340912871,0,0.201504196455281,0.169560592310488,0,0.545492241181669,0,0.365921118388786,0.265059536642971,1.62671520017326,0.932949495138334,1.51392510525377,0,1.56449532329816,0,0,0,0,0.354920400119532,0.505754070234305,0.723033089650446,0.992645754591546,1.08939722046203,0.474541238222193,1.48314438976181,0.392442930250692,0,0,2.80483547606892,0,1.47008711385542,0,1.96565443335525,0,1.7658523976586,0.491953754172454,0.343135620597051,0.109750285408626,3.37205259772859,1.10581869652794,0.462942225792648,1.62904152655162,1.03993478527958,0,0.115930404975077,0.117408694235822,0.144366447761074,0,0.570762456703795,1.58040879591855,0.858486162094873,0,0.234004265139238,0.297262324577456,0,0.16798212819886,0.141775097242386,0,0,0.383382679165211,0,0.264145302039678,0.207328115540772,0,0.25248486685276,0.126995788584338,0.763976851116555,0,1.71072446022705,1.23392991243988,0,0.571652865261156,0.224262168690721,1.30788020649984,0.2933531432838,0.258543431515556,3.57656445851882,0.845302752556,1.06375246633948,1.04007436911366,0.771622122786426,0,0.532844358032199,0.142977993658148,1.08524321078289,0,0,0,1.58390374586686,0,0,0,0,0,0,0.958499421966331,1.14861935834114,0,0.868687840005475,1.02738161275192,0,0.896681151948218,0,0.215627574859517,0,0,0,0,0.335032530668698,0.637938751653163,0.749007023947182,0,0,0,0.500170521059677,0.542530047399471,0.415941723061614,3.39015078714607,0.946214490203608,0.585707074963566,0,0,3.10419213877515,0.664225598535437,0.184369168541703,0.173767228936166,0,0.343143423810856,0,0,0.106727557803444,0.303127571446259,0,0.604780586659361,1.24053903909388,0.920771839728375,2.80660094433074,0.640695746278505,0.511707249066704,0.965123526861645,0,1.69630663182921,0.710246901252508,0.0821271560138091,1.03850885836724,0.581051892299796,0.120859449591622,1.20303882181971,0.920809889358963,0.459257792658427,1.82091168006717,1.04899531967539,0.902399225814824,0.308061348417659,0,0,0.105551628892876,0,0.510281115829547,0.431831832204279,1.54227252690289,0.270946437543853,0.501689773854853,0.254876273045038,0.831076008928724,0.447749509444357,0,0,0,0.328014645699706,0.325378394664303,0.309123034943167,0.54941678891006,0.082509499920588,0.574265537996172,1.30012049207304,0,0.48335359146061,0.770243085573222,1.22802939780904,1.37836572484531,0.644521469209642,1.45016693914229,0.596586391912706,0.178064071293475,0.495854746082934,1.15314040419064,0,0.708104465988849,1.85938219718914,0.31481234683064,0,0.616067160352178,0.532306030317022,0,0.37064843820784,1.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| ||
|short_description=p8@SHMT2 | |short_description=p8@SHMT2 | ||
}} | }} |
Latest revision as of 13:41, 19 September 2015
Short description: | p8@SHMT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_SHMT2_5end |
Coexpression cluster: | NA |
Association with transcript: | -246bp_to_ENST00000557529_5end |
EntrezGene: | SHMT2 |
HGNC: | 10852 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data