Personal tools

FFCP PHASE1:Hg19::chr19:51538121..51538134,-: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(6 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{FFCP
{{FFCP
|DHSsupport=supported 
|DPIdataset=robust
|EntrezGene=43849
|EntrezGene=43849
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding
|HGNC=6360
|HGNC=6360
|TSSclassifier=strong
|UniProt=Q9UKR2,E9PPC6,E9PR22
|UniProt=Q9UKR2,E9PPC6,E9PR22
|association_with_transcript=-3bp_to_ENST00000529888,ENST00000530943,ENST00000531374,uc010ycp.1,uc010ycq.1,uc010ycr.1,uc010ycs.1_5end
|association_with_transcript=-3bp_to_ENST00000529888,ENST00000530943,ENST00000531374,uc010ycp.1,uc010ycq.1,uc010ycr.1,uc010ycs.1_5end
|cluster_id=chr19:51538121..51538134,-
|coexpression_cluster_id=C94
|coexpression_cluster_id=C94
|description=CAGE_peak_4_at_KLK12_5end
|description=CAGE_peak_4_at_KLK12_5end
|id=chr19:51538121..51538134,-
|id=chr19:51538121..51538134,-
|ontology_enrichment_celltype=CL:0000575!2.55e-13!2;CL:0000622!2.46e-11!5;CL:0000154!1.59e-09!6;CL:0002623!6.59e-09!3;CL:0002159!1.64e-07!13
|ontology_enrichment_celltype=CL:0000575!2.55e-13!2;CL:0000622!2.46e-11!5;CL:0000154!1.59e-09!6;CL:0002623!6.59e-09!3;CL:0002159!1.64e-07!13
|ontology_enrichment_celltype_v019=CL:0000575;2.04e-36;2
|ontology_enrichment_celltype_v019_2=CL:0000575,2.45e-36,2
|ontology_enrichment_development_v019=UBERON:0009143;1.30e-19;1!UBERON:0008814;2.99e-10;2!UBERON:0010056;2.99e-10;2
|ontology_enrichment_disease=DOID:5093!5.52e-07!4;DOID:1612!5.52e-07!4
|ontology_enrichment_disease=DOID:5093!5.52e-07!4;DOID:1612!5.52e-07!4
|ontology_enrichment_disease_v019=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0000166!4.84e-13!21;UBERON:0003127!6.32e-13!2;UBERON:0000078!1.81e-11!18;UBERON:0001042!1.09e-09!10;UBERON:0009145!1.09e-09!10;UBERON:0000002!1.37e-09!6;UBERON:0001560!1.37e-09!6;UBERON:0000165!1.46e-09!28;UBERON:0000930!1.46e-09!28;UBERON:0003408!1.64e-09!10;UBERON:0001004!1.67e-09!72;UBERON:0001044!1.89e-09!6;UBERON:0003293!1.89e-09!6;UBERON:0003294!1.89e-09!6;UBERON:0010047!1.89e-09!6;UBERON:0000167!1.89e-09!6;UBERON:0001723!6.09e-09!3;UBERON:0001033!6.09e-09!3;UBERON:0010056!6.09e-09!3;UBERON:0006562!8.08e-09!11;UBERON:0001444!1.27e-08!48;UBERON:0004921!2.64e-08!129;UBERON:0004185!2.64e-08!129;UBERON:0002372!1.36e-07!1;UBERON:0001961!1.36e-07!1;UBERON:0001744!1.36e-07!1;UBERON:0001735!1.36e-07!1;UBERON:0000161!1.78e-07!35;UBERON:0004119!1.83e-07!169;UBERON:0000925!1.83e-07!169;UBERON:0006595!1.83e-07!169;UBERON:0001007!2.22e-07!155;UBERON:0001555!2.22e-07!155;UBERON:0007026!2.22e-07!155;UBERON:0000072!4.02e-07!46;UBERON:0000964!4.48e-07!4;UBERON:0004348!4.48e-07!4;UBERON:0005427!4.48e-07!4
|ontology_enrichment_uberon=UBERON:0000166!4.84e-13!21;UBERON:0003127!6.32e-13!2;UBERON:0000078!1.81e-11!18;UBERON:0001042!1.09e-09!10;UBERON:0009145!1.09e-09!10;UBERON:0000002!1.37e-09!6;UBERON:0001560!1.37e-09!6;UBERON:0000165!1.46e-09!28;UBERON:0000930!1.46e-09!28;UBERON:0003408!1.64e-09!10;UBERON:0001004!1.67e-09!72;UBERON:0001044!1.89e-09!6;UBERON:0003293!1.89e-09!6;UBERON:0003294!1.89e-09!6;UBERON:0010047!1.89e-09!6;UBERON:0000167!1.89e-09!6;UBERON:0001723!6.09e-09!3;UBERON:0001033!6.09e-09!3;UBERON:0010056!6.09e-09!3;UBERON:0006562!8.08e-09!11;UBERON:0001444!1.27e-08!48;UBERON:0004921!2.64e-08!129;UBERON:0004185!2.64e-08!129;UBERON:0002372!1.36e-07!1;UBERON:0001961!1.36e-07!1;UBERON:0001744!1.36e-07!1;UBERON:0001735!1.36e-07!1;UBERON:0000161!1.78e-07!35;UBERON:0004119!1.83e-07!169;UBERON:0000925!1.83e-07!169;UBERON:0006595!1.83e-07!169;UBERON:0001007!2.22e-07!155;UBERON:0001555!2.22e-07!155;UBERON:0007026!2.22e-07!155;UBERON:0000072!4.02e-07!46;UBERON:0000964!4.48e-07!4;UBERON:0004348!4.48e-07!4;UBERON:0005427!4.48e-07!4
|ontology_enrichment_uberon_v019=UBERON:0002372;1.88e-19;1!UBERON:0005795;1.88e-19;1!UBERON:0001961;1.88e-19;1!UBERON:0001744;1.88e-19;1!UBERON:0001042;1.88e-19;1!UBERON:0001735;1.88e-19;1!UBERON:0000964;8.88e-19;4!UBERON:0010409;8.88e-19;4!UBERON:0006562;2.07e-10;2!UBERON:0003127;2.99e-10;2!UBERON:0000341;2.99e-10;2!UBERON:0010313;4.34e-08;10!UBERON:0000020;1.33e-07;23!UBERON:0001043;2.05e-07;3!UBERON:0001032;2.62e-07;24!UBERON:0004456;2.62e-07;24!UBERON:0001723;2.97e-07;3!UBERON:0001033;2.97e-07;3
|ontology_enrichment_uberon_v019_2=UBERON:0002372,2.25e-19,1;UBERON:0001961,2.25e-19,1;UBERON:0001744,2.25e-19,1;UBERON:0001735,2.25e-19,1;UBERON:0000964,9.72e-19,4;UBERON:0010409,9.72e-19,4;UBERON:0004348,9.72e-19,4;UBERON:0005427,9.72e-19,4;UBERON:0000341,2.49e-10,2;UBERON:0003127,3.27e-10,2;UBERON:0001042,3.90e-08,10;UBERON:0009145,3.90e-08,10;UBERON:0010313,4.50e-08,10;UBERON:0002342,4.50e-08,10;UBERON:0005062,4.50e-08,10;UBERON:0006562,1.78e-07,11;UBERON:0001043,2.05e-07,3;UBERON:0009143,2.05e-07,3;UBERON:0000020,2.68e-07,24;UBERON:0001032,2.68e-07,24;UBERON:0004456,2.68e-07,24;UBERON:0000153,2.75e-07,62;UBERON:0007811,2.75e-07,62;UBERON:0001723,2.97e-07,3;UBERON:0001033,2.97e-07,3;UBERON:0010056,2.97e-07,3
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,1.45718115317017,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.83654246567162,2.15460723810632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.78257164304836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.559518030877778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.51215543128185,0.691259661814092,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233939463462106,0.198950775161368,0,0,0,4.07599677630019,0.463044948647668,0,6.58444214906132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49263787330687,0,0.0645889098360061,0,0,0,0,1.30630048738177,0.342233301085281,2.02056159043763,1.29099969706817,0.332660356546013,0,0,0,0,0,0,2.44137706989443,0,0,0
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,1.45718115317017,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.83654246567162,2.15460723810632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.78257164304836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.559518030877778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.51215543128185,0.691259661814092,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233939463462106,0.198950775161368,0,0,0,4.07599677630019,0.463044948647668,0,6.58444214906132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49263787330687,0,0.0645889098360061,0,0,0,0,1.30630048738177,0.342233301085281,2.02056159043763,1.29099969706817,0.332660356546013,0,0,0,0,0,0,2.44137706989443,0,0,0
|short_description=p4@KLK12
|short_description=p4@KLK12
}}
}}

Latest revision as of 14:08, 19 September 2015

Short description:p4@KLK12
Species:Human (Homo sapiens)
DPI dataset: Robust
TSS-like-by-RIKEN-classifier(Yes/No): Yes
DHS support(Yes/No): Yes
Description: CAGE_peak_4_at_KLK12_5end
Coexpression cluster:C94_smallcell_adrenal_lung_nonsmall_small_somatostatinoma_teratocarcinoma
Association with transcript: -3bp_to_ENST00000529888, ENST00000530943, ENST00000531374, uc010ycp.1, uc010ycq.1, uc010ycr.1, uc010ycs.1_5end
EntrezGene:KLK12
HGNC: 6360
UniProt: Q9UKR2E9PPC6E9PR22
Genome view:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression



0
1
2
3
4
5
6
7




  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FFCP_PHASE1:Hg19::chr19:51538121..51538134,-&oldid=4144944"