FFCP PHASE1:Hg19::chr6:106547079..106547114,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=639 | |EntrezGene=639 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=9346 | |HGNC=9346 | ||
|TSSclassifier=strong | |||
|UniProt=A1YZ20 | |UniProt=A1YZ20 | ||
|association_with_transcript=205bp_to_EF151143_5end | |association_with_transcript=205bp_to_EF151143_5end | ||
|cluster_id=chr6:106547079..106547114,+ | |||
|coexpression_cluster_id=C1361 | |coexpression_cluster_id=C1361 | ||
|description=CAGE_peak_9_at_PRDM1_5end | |description=CAGE_peak_9_at_PRDM1_5end | ||
|id=chr6:106547079..106547114,+ | |id=chr6:106547079..106547114,+ | ||
|ontology_enrichment_celltype=CL:0000791;4.50e-36;18!CL:0000789;4.50e-36;18!CL:0002419;4.50e-36;18!CL:0000084;4.73e-36;25!CL:0000624;6.59e-24;6!CL:0000625;6.16e-18;11!CL:0000623;3.15e-17;3!CL:0000542;1.64e-13;53!CL:0000898;9.81e-09;3!CL:0000895;3.60e-07;1 | |ontology_enrichment_celltype=CL:0000791!1.11e-27!18;CL:0000789!1.11e-27!18;CL:0002420!1.11e-27!18;CL:0002419!1.11e-27!18;CL:0000790!1.11e-27!18;CL:0000084!5.39e-26!25;CL:0000827!5.39e-26!25;CL:0000838!1.58e-20!52;CL:0000542!5.91e-20!53;CL:0000051!5.91e-20!53;CL:0000625!1.10e-17!11;CL:0002087!1.02e-11!119;CL:0000080!6.23e-11!6;CL:0000624!9.75e-11!6;CL:0000738!1.21e-09!140;CL:0002031!1.69e-08!124 | ||
| | |ontology_enrichment_celltype_v019=CL:0000791;4.50e-36;18!CL:0000789;4.50e-36;18!CL:0002419;4.50e-36;18!CL:0000084;4.73e-36;25!CL:0000624;6.59e-24;6!CL:0000625;6.16e-18;11!CL:0000623;3.15e-17;3!CL:0000542;1.64e-13;53!CL:0000898;9.81e-09;3!CL:0000895;3.60e-07;1 | ||
|ontology_enrichment_disease=DOID:0060060;2.44e-07;1!DOID:0060061;2.44e-07;1!DOID:8691;2.44e-07;1!DOID:4960;7.29e-07;1!DOID:0070004;7.29e-07;1 | |ontology_enrichment_celltype_v019_2=CL:0000791,2.98e-36,18;CL:0000789,2.98e-36,18;CL:0002420,2.98e-36,18;CL:0002419,2.98e-36,18;CL:0000790,2.98e-36,18;CL:0000084,3.23e-36,25;CL:0000827,3.23e-36,25;CL:0000838,6.23e-28,52;CL:0000542,2.45e-27,53;CL:0000051,2.45e-27,53;CL:0000624,3.54e-24,6;CL:0000625,6.37e-18,11;CL:0000623,3.16e-17,3;CL:0000825,3.16e-17,3;CL:0002087,4.79e-12,115;CL:0002031,5.66e-10,120;CL:0000988,1.01e-09,177;CL:0000738,1.25e-09,136;CL:0000898,7.78e-09,3;CL:0000810,3.20e-07,1;CL:0000895,3.20e-07,1;CL:0002436,3.20e-07,1;CL:0002427,3.20e-07,1;CL:0002428,3.20e-07,1;CL:0002429,3.20e-07,1;CL:0002433,3.20e-07,1;CL:0002431,3.20e-07,1;CL:0002432,3.20e-07,1;CL:0000037,4.07e-07,168 | ||
|ontology_enrichment_uberon=UBERON:0000178;1.50e-09;15!UBERON:0000179;1.50e-09;15!UBERON:0000463;1.50e-09;15!UBERON:0002372;7.29e-07;1!UBERON:0000029;7.29e-07;1!UBERON:0001961;7.29e-07;1!UBERON:0001744;7.29e-07;1!UBERON:0001042;7.29e-07;1!UBERON:0001735;7.29e-07;1 | |ontology_enrichment_development_v019=CL:0000790;4.50e-36;18!CL:0000051;1.64e-13;53!CL:0002427;3.60e-07;1 | ||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060060;2.44e-07;1!DOID:0060061;2.44e-07;1!DOID:8691;2.44e-07;1!DOID:4960;7.29e-07;1!DOID:0070004;7.29e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,2.37e-07,1;DOID:0060061,2.37e-07,1;DOID:8691,2.37e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0000178!3.98e-17!15;UBERON:0000179!3.98e-17!15;UBERON:0000463!3.98e-17!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.50e-09;15!UBERON:0000179;1.50e-09;15!UBERON:0000463;1.50e-09;15!UBERON:0002372;7.29e-07;1!UBERON:0000029;7.29e-07;1!UBERON:0001961;7.29e-07;1!UBERON:0001744;7.29e-07;1!UBERON:0001042;7.29e-07;1!UBERON:0001735;7.29e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.45e-09,15;UBERON:0000179,1.45e-09,15;UBERON:0000463,1.45e-09,15;UBERON:0002372,6.49e-07,1;UBERON:0001961,6.49e-07,1;UBERON:0001744,6.49e-07,1;UBERON:0001735,6.49e-07,1;UBERON:0000029,7.29e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.164201178899891,0.0787107813136792,0,0.383829398097213,0,0,0,0,0.0774672005803016,0,0,0,0.601633342410425,0.217010870715852,0.223915474239924,0.647787332037959,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0.188242339542605,0,0.224723484445085,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0.560508562981536,0,1.96709770113833,2.75107533924415,2.2616164889946,4.17966238476695,0.32592226663359,0.473447805734733,0,6.90744832688076,2.94605907474837,7.08908462667588,6.22848886659536,8.32593578216889,6.63302672555379,0.986627427622057,1.10540007114339,1.73881851441031,0,0,0,1.35971211237079,2.68254345521345,2.06176467289578,3.28925599625354,1.27426165729639,0.651083453856419,0.950452044448374,2.25862678616659,2.55973222308837,1.24930726552346,1.89421801635213,0.821127996921047,0.80642697289893,1.87208137048455,0.868946423296794,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0.370784442784429,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920498986422993,0.161646056818812,0,0,0,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0,0,0.236613600079688,0.168584690078102,0.241011029883482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370353780634118,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.671928512795438,0.283550194484773,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300343057843917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,1.97030760201927,1.07813787429759,1.41177339907723,0,0,0,0,0,0,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.27444828735176,0.862856803274467,0.960548020230999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0.200506470303285,0,0.229628896329213,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0.0852266274161009,0,0.165284915360978,0.576570202095319,0.765676274967505,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0,0.424216295861138,0,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,1.52927441428475,0.569647187174163,0.952927101831156,0.822724546172388,0.648473311192717,0,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0.140669416410513,0,0.659215496907038,0,0,0.828851746593443,0,0,0,0,0.0898683511473268,0,0,0.295930216910801,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.530745387020035,0,2.6686901581256,3.33622635155558,3.65476823269094,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0,0,0.288180834308212,0,0,0,0,0,0,0,0,0,0,0,0,0,4.46908502274835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.640724475406168,0,0,1.48849806543585,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.39978572953381,0,1.03328987796489,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0.392600934460972,0,0,0,0,0,0,0,0,0,0,0,0.617393264863557,0,0,0,0,0,0,0,0,0.0939839179798536,0.257831551894309,0.0999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0.827054095813604,0,0.151557396436479,0,0,0,0,0.714193294391221,0,0.0620747142958579,0,0.25458863311266,0.606351566874658,0.217716747896961,0,1.6164492723501,0.143444410785353,0,0.0814032686109745,0,0,0.179650404213174,0,0,0,0,0.402547587182052,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.164201178899891,0.0787107813136792,0,0.383829398097213,0,0,0,0,0.0774672005803016,0,0,0,0.601633342410425,0.217010870715852,0.223915474239924,0.647787332037959,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0.188242339542605,0,0.224723484445085,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0.560508562981536,0,1.96709770113833,2.75107533924415,2.2616164889946,4.17966238476695,0.32592226663359,0.473447805734733,0,6.90744832688076,2.94605907474837,7.08908462667588,6.22848886659536,8.32593578216889,6.63302672555379,0.986627427622057,1.10540007114339,1.73881851441031,0,0,0,1.35971211237079,2.68254345521345,2.06176467289578,3.28925599625354,1.27426165729639,0.651083453856419,0.950452044448374,2.25862678616659,2.55973222308837,1.24930726552346,1.89421801635213,0.821127996921047,0.80642697289893,1.87208137048455,0.868946423296794,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0.370784442784429,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920498986422993,0.161646056818812,0,0,0,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0,0,0.236613600079688,0.168584690078102,0.241011029883482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370353780634118,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.671928512795438,0.283550194484773,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300343057843917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,1.97030760201927,1.07813787429759,1.41177339907723,0,0,0,0,0,0,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.27444828735176,0.862856803274467,0.960548020230999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0.200506470303285,0,0.229628896329213,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0.0852266274161009,0,0.165284915360978,0.576570202095319,0.765676274967505,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0,0.424216295861138,0,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,1.52927441428475,0.569647187174163,0.952927101831156,0.822724546172388,0.648473311192717,0,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0.140669416410513,0,0.659215496907038,0,0,0.828851746593443,0,0,0,0,0.0898683511473268,0,0,0.295930216910801,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.530745387020035,0,2.6686901581256,3.33622635155558,3.65476823269094,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0,0,0.288180834308212,0,0,0,0,0,0,0,0,0,0,0,0,0,4.46908502274835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.640724475406168,0,0,1.48849806543585,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.39978572953381,0,1.03328987796489,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0.392600934460972,0,0,0,0,0,0,0,0,0,0,0,0.617393264863557,0,0,0,0,0,0,0,0,0.0939839179798536,0.257831551894309,0.0999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0.827054095813604,0,0.151557396436479,0,0,0,0,0.714193294391221,0,0.0620747142958579,0,0.25458863311266,0.606351566874658,0.217716747896961,0,1.6164492723501,0.143444410785353,0,0.0814032686109745,0,0,0.179650404213174,0,0,0,0,0.402547587182052,0 | ||
|short_description=p9@PRDM1 | |short_description=p9@PRDM1 | ||
}} | }} |
Latest revision as of 15:07, 19 September 2015
Short description: | p9@PRDM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_PRDM1_5end |
Coexpression cluster: | C1361_CD4_cord_mycosis_hairy_CD8_Whole_thymus |
Association with transcript: | 205bp_to_EF151143_5end |
EntrezGene: | PRDM1 |
HGNC: | 9346 |
UniProt: | A1YZ20 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
blood | 1.45e-09 | 15 |
haemolymphatic fluid | 1.45e-09 | 15 |
organism substance | 1.45e-09 | 15 |
tonsil | 6.49e-07 | 1 |
mucosa-associated lymphoid tissue | 6.49e-07 | 1 |
lymphoid tissue | 6.49e-07 | 1 |
tonsillar ring | 6.49e-07 | 1 |
lymph node | 7.29e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 2.37e-07 | 1 |
cutaneous T cell lymphoma | 2.37e-07 | 1 |
mycosis fungoides | 2.37e-07 | 1 |