FFCP PHASE1:Hg19::chr2:204571443..204571454,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:204571443..204571454,+
|short_description=p5@CD28
|description=CAGE_peak_5_at_CD28_5end
|association_with_transcript=245bp_to_uc002vag.1,uc002vaj.3,uc010zi...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=940 | |EntrezGene=940 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1653 | |HGNC=1653 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=245bp_to_uc002vag.1,uc002vaj.3,uc010zio.1_5end | |||
|cluster_id=chr2:204571443..204571454,+ | |||
|coexpression_cluster_id=C103 | |||
|description=CAGE_peak_5_at_CD28_5end | |||
|id=chr2:204571443..204571454,+ | |||
|ontology_enrichment_celltype=CL:0000791!3.10e-37!18;CL:0000789!3.10e-37!18;CL:0002420!3.10e-37!18;CL:0002419!3.10e-37!18;CL:0000790!3.10e-37!18;CL:0000084!7.63e-32!25;CL:0000827!7.63e-32!25;CL:0000838!2.91e-29!52;CL:0000542!1.50e-28!53;CL:0000051!1.50e-28!53;CL:0000625!1.18e-25!11;CL:0000738!2.66e-18!140;CL:0000624!1.11e-15!6;CL:0002087!7.00e-15!119;CL:0000037!7.70e-13!172;CL:0000566!7.70e-13!172;CL:0000988!1.51e-11!182;CL:0002031!6.54e-11!124;CL:0002032!2.22e-10!165;CL:0000837!2.22e-10!165;CL:0000898!6.50e-09!3;CL:0000842!6.56e-08!3;CL:0000623!8.28e-08!3;CL:0000825!8.28e-08!3;CL:0000775!1.51e-07!3;CL:0000094!4.24e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000791;2.99e-59;18!CL:0000789;2.99e-59;18!CL:0002419;2.99e-59;18!CL:0000084;4.60e-47;25!CL:0000625;1.28e-37;11!CL:0000624;4.63e-27;6!CL:0000542;5.62e-15;53!CL:0000898;8.05e-15;3!CL:0000226;5.59e-13;3!CL:0000842;5.59e-13;3!CL:0000815;1.97e-10;2!CL:0000792;1.97e-10;2!CL:0002677;1.97e-10;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.67e-59,18;CL:0000789,2.67e-59,18;CL:0002420,2.67e-59,18;CL:0002419,2.67e-59,18;CL:0000790,2.67e-59,18;CL:0000084,4.03e-47,25;CL:0000827,4.03e-47,25;CL:0000625,1.07e-37,11;CL:0000838,5.68e-29,52;CL:0000542,2.48e-28,53;CL:0000051,2.48e-28,53;CL:0000624,4.95e-27,6;CL:0000738,5.10e-18,136;CL:0002087,2.49e-17,115;CL:0000898,8.24e-15,3;CL:0000037,2.21e-13,168;CL:0000226,5.25e-13,3;CL:0000842,5.25e-13,3;CL:0000988,2.21e-12,177;CL:0002031,3.73e-12,120;CL:0002032,9.31e-11,161;CL:0000837,9.31e-11,161;CL:0000815,2.02e-10,2;CL:0000792,2.02e-10,2;CL:0002677,2.02e-10,2 | |||
|ontology_enrichment_development_v019=CL:0000790;2.99e-59;18!CL:0000051;5.62e-15;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001042!1.74e-07!10;UBERON:0009145!1.74e-07!10;UBERON:0006562!9.71e-07!11 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p5@CD28 | |||
}} | }} |
Latest revision as of 16:03, 19 September 2015
Short description: | p5@CD28 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_CD28_5end |
Coexpression cluster: | C103_CD4_CD8_Natural_Peripheral_Whole_Neutrophils_Basophils |
Association with transcript: | 245bp_to_uc002vag.1, uc002vaj.3, uc010zio.1_5end |
EntrezGene: | CD28 |
HGNC: | 1653 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.67e-59 | 18 |
alpha-beta T cell | 2.67e-59 | 18 |
immature T cell | 2.67e-59 | 18 |
mature T cell | 2.67e-59 | 18 |
immature alpha-beta T cell | 2.67e-59 | 18 |
T cell | 4.03e-47 | 25 |
pro-T cell | 4.03e-47 | 25 |
CD8-positive, alpha-beta T cell | 1.07e-37 | 11 |
lymphoid lineage restricted progenitor cell | 5.68e-29 | 52 |
lymphocyte | 2.48e-28 | 53 |
common lymphoid progenitor | 2.48e-28 | 53 |
CD4-positive, alpha-beta T cell | 4.95e-27 | 6 |
leukocyte | 5.10e-18 | 136 |
nongranular leukocyte | 2.49e-17 | 115 |
naive T cell | 8.24e-15 | 3 |
hematopoietic stem cell | 2.21e-13 | 168 |
single nucleate cell | 5.25e-13 | 3 |
mononuclear cell | 5.25e-13 | 3 |
hematopoietic cell | 2.21e-12 | 177 |
hematopoietic lineage restricted progenitor cell | 3.73e-12 | 120 |
hematopoietic oligopotent progenitor cell | 9.31e-11 | 161 |
hematopoietic multipotent progenitor cell | 9.31e-11 | 161 |
regulatory T cell | 2.02e-10 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 2.02e-10 | 2 |
naive regulatory T cell | 2.02e-10 | 2 |