FFCP PHASE1:Hg19::chr15:90809334..90809354,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51335 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18077 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=439bp_to_NR_028052,uc002bpg.1_5end | |||
|cluster_id=chr15:90809334..90809354,+ | |||
|coexpression_cluster_id=C123 | |||
|description=CAGE_peak_7_at_NGRN_5end | |||
|id=chr15:90809334..90809354,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000624;2.58e-23;6!CL:0000791;2.11e-16;18!CL:0000789;2.11e-16;18!CL:0002419;2.11e-16;18!CL:0000623;5.60e-13;3!CL:0000898;2.72e-12;3!CL:0000226;2.93e-12;3!CL:0000842;2.93e-12;3!CL:0000767;3.41e-12;3!CL:0000084;2.62e-11;25!CL:0000542;7.99e-11;53!CL:0000815;1.08e-08;2!CL:0000792;1.08e-08;2!CL:0002677;1.08e-08;2!CL:0000236;4.04e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000624,3.26e-23,6;CL:0000838,8.24e-18,52;CL:0000542,2.15e-17,53;CL:0000051,2.15e-17,53;CL:0000791,2.34e-16,18;CL:0000789,2.34e-16,18;CL:0002420,2.34e-16,18;CL:0002419,2.34e-16,18;CL:0000790,2.34e-16,18;CL:0000623,5.73e-13,3;CL:0000825,5.73e-13,3;CL:0000738,1.15e-12,136;CL:0000226,3.36e-12,3;CL:0000898,3.36e-12,3;CL:0000842,3.36e-12,3;CL:0000767,3.62e-12,3;CL:0002087,5.28e-12,115;CL:0000084,2.81e-11,25;CL:0000827,2.81e-11,25;CL:0000037,4.37e-09,168;CL:0000815,1.38e-08,2;CL:0000792,1.38e-08,2;CL:0002677,1.38e-08,2;CL:0000988,2.55e-08,177;CL:0002031,5.29e-08,120;CL:0002032,4.66e-07,161;CL:0000837,4.66e-07,161 | |||
|ontology_enrichment_development_v019=CL:0000790;2.11e-16;18!CL:0000051;7.99e-11;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!8.60e-11!34;UBERON:0003528!8.60e-11!34;UBERON:0001869!3.06e-10!32;UBERON:0001893!1.57e-09!34;UBERON:0002791!2.92e-09!33;UBERON:0003080!1.07e-08!42;UBERON:0001049!1.22e-08!57;UBERON:0005068!1.22e-08!57;UBERON:0006241!1.22e-08!57;UBERON:0007135!1.22e-08!57;UBERON:0001017!2.14e-08!82;UBERON:0002780!3.39e-08!41;UBERON:0001890!3.39e-08!41;UBERON:0006240!3.39e-08!41;UBERON:0005743!1.37e-07!86;UBERON:0002619!1.52e-07!22;UBERON:0000956!2.24e-07!25;UBERON:0000203!2.24e-07!25;UBERON:0002616!5.73e-07!59;UBERON:0000955!9.57e-07!69;UBERON:0006238!9.57e-07!69 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0.54503513781167,0,0,0,0.446961094427288,0.872338524100369,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0.730310090387373,0.487932798790507,0,0,0,0,0.410623275218653,0.251085279189606,0.229240217243854,0,0.0787107813136792,3.14691421479123,4.22212337906934,2.32224184974114,0,0.6024118375565,0,0.0774672005803016,0.710846162437108,0.293600439334847,2.76997704265939,1.80490002723128,2.38711957787437,0,0,0,0.145398238779565,0.377875943688809,0.242584061187816,0,0.411167888021826,0,0.28769239232215,0,0,0,0,0,0,0,0,0,0.641858054152187,0,0.329851300186716,0.398927315243264,0,0,0,0,0,0.521482918420201,0.434377689410233,0,0.368277635987565,0.316462387440884,0,0,0.209658645508376,0,0,0,0,0,0,1.75996244461323,0.546138611262131,0.889509253863555,1.70692089026603,0,0.574752439954483,0.661044872784862,0,7.96898156753228,9.98303221930596,31.3464047062688,0,1.68152568894461,0,10.622327586147,10.2182798314783,9.86887195197644,0,5.21475626613745,3.78758244587787,0,0.334231370655521,2.06224135232386,1.10766947291811,2.97884250141517,0,0.130059347559878,0,0,0,2.66915813691709,0.535081656179426,2.09071047609954,0,5.74830740402882,2.74901956386104,5.56643322442906,0,0,0,0.150575119077773,0,0,0,0,20.9671012953722,11.7673686144743,15.2065624076939,2.43806866313962,0,0.255725123687061,0,0,0.144846518960824,0,0,0,0.221729397462564,0.087834785693126,1.11332214173056,0,0.370784442784429,0,0,0.132957960518865,0.238490624305342,0,0.371457501329565,0,0,0,0,0,0.550236083880135,0.626984899610432,0,0.35576626268671,0,0.402829317109147,0,0.24406205754817,0,0.81014194788176,0.0892997282840798,0,0.225222960966644,0,0,0.183201743930407,0,0,0,0,0.25326102332916,0,0,0,0,0,0,0.311211035399766,0,0.163461903113459,0,0,0,0,0,0.149448680551801,0.352303495931295,0.323745888736263,0,0,0.122834317311768,0.103325781175765,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0.358779271377724,0.213557388818567,0,0,0,0,0,0,0.194874010322397,0,0,0.161646056818812,0,0.201504196455281,0.169560592310488,0,0,0.286804595389004,0,0.265059536642971,0,0.207322110030741,0,0.36497735907583,0,0.643240938192885,0,0.464367928031979,0,0.354920400119532,0.505754070234305,0.482022059766964,0.220587945464788,0.217879444092406,0,0.269662616320329,0.392442930250692,0,0,0,0,0,0,0.982827216677626,0,0,0.122988438543114,0,0.329250856225877,0,0.100528972411631,0,0.325808305310325,0,0,0.115930404975077,0.117408694235822,0,0.925971025153221,0.380508304469197,1.58040879591855,0.858486162094873,0,0,0,0.93733833986777,0,0.141775097242386,0.0895585227028483,0,0,0,0,0,0.288239906833923,0.75745460055828,0,0,0,0,0.102827492703324,0.300343057843917,0,0,0.43596006883328,0.07333828582095,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.399891964728228,0,0,0,0,0,0,0,0,0,0.112085143993527,14.1862147345388,13.5845372161496,11.5508732651774,0.254094624222463,0,0,0.502548796003046,1.27587750330633,0,0,0.414415513436035,0,0.500170521059677,0,0,0.178428988797162,0.157702415033935,0,0.300946099727719,0,0,0,0.184369168541703,0,0,0.343143423810856,2.06768026122887,3.8828556147351,6.08347079479633,0.303127571446259,0,0.30239029332968,0,0.153461973288062,0.841980283299221,0.128139149255701,0,0.160853921143607,0,0.154209693802656,0.177561725313127,0.0821271560138091,0,0.232420756919918,0,0.40101294060657,0.0920809889358963,0.114814448164607,0,0.131124414959424,0,0.0770153371044148,0,1.46139224653261,0.105551628892876,0,0.170093705276516,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0.206082023295445,0.0915694648183434,0,0,0,0,0.290012154876366,0.154048617114644,0.15350367472613,0.275673144969061,0.214840489736547,0,0.170453254832202,0.178064071293475,0.330569830721956,0.192190067365106,0,0.2023155617111,0,0,0,0,0.532306030317022,0,0.37064843820784,0.143124886741991,0.372158369359667,0,0.190630193923825,0,0,0,0,0,0,0.235624804691373,0,0,0.421258456238981,0,0.243713489631284,0,0.136499911407986,0.141405431953713,0,0,0.66343897524122,0.876901770507525,0,0,0,0,0,0,0,0.35667105148125,0,0,0.329294892959902,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.854592569019785,0.962479855263359,0,0,0,0.0711418433484141,0.159426272728822,0,0,0.211673582723883,0,0,0,0,0,0.169291777801603,0.1605880751037,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0.242721043499027,0.111443384277478,0,0.47748896947538,0,0,0.994147647766298,0.844016498463076,0,0.16480387422676,0.422250816255987,0.597743964753209,0.276283915531148,1.76352923497993,0.102268682502155,0.369254416383208,0,0,0.179021174675609,0,0.0986434056369336,0,0,0.969332746095218,0.463840490809256,0,0,0.0874599999961957,1.44999915086959,0.1137934482855,0.508507300585533,0,2.06846023944879,0.583209226766509,0,0.885741385813839,0.723578631752448,0,0.221158519862449,0,1.31631238292384,0.10893846351899,0.278847488557207,0,0.113942055847001,0,0,0.108647371922008,0.31900115973192,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0.326465616318295,0,0,0,0.176915129006678,0,0.296521128680622,0.123563938946503,0,0,0,0.234264445725339,0,0,0.242780379534093,0.394584402849391,0,0.91821828489147,0.189559738885464,1.20258735531594,0.414752765588989,0,0.330991955875499,0,0,0.284609546029793,0.138674673013139,0.520679215005393,0.195984794828755,0.0870592065804026,0,0.171986032471617,0.19351266257817,0.219267951258557,0.246346371159628,0.0969890164884194,0.264768380074501,0,0,0.19871461170299,0.316553979779393,0.391102765469606,0,0.426905989478705,0.19980960958213,0.144090417154106,0.114536596165916,0,0.720273989940749,0,0,0,0,0.305994652908965,0,0.600420288709789,0.410716136675979,0,0,0.525774708558629,0,0.229160424011684,0.717873024576814,0.199679000498991,0.429226048136571,0,0.0671834724867263,0.360299883542404,0,0.0787831823072236,0.247247575143499,0.13480708770837,0.295282444544246,0,1.59045937961861,0.544813624446302,0.321506296930038,0,0.415440338029185,0.449947783103001,0.77380195455795,0.485996453264197,0,0.0788057072991982,0.0524545881349981,0,0,0.191915197319445,0.714695326373367,0,1.5256112259285,1.08599920350743,0.864221491201268,0,0,0.164185041498678,0.170388021785422,0,0.293104467356165,0,0.517131825446202,0.66116300871345,0.171086837884329,0,0.213574825135389,0.157204305099666,0.828478110694391,0,0,0.121792598380896,0.638341257770182,0,0,0.306345576763462,0.327872630709804,0,1.77213635993397,2.19647276823534,0.3755727921195,0,0.221858103073705,0.496771223531068,0.276697269872462,0.124980407962107,0,0,0.470531639396343,0.468334905806882,1.44921028610825,0,0.233713309847224,0,0.378806010550178,0,0,0.457680136793847,0,0.15543720058278,0,0.318593534327405,0.449803112163605,0,0,0.265841714557995,0,0,0.761610424337591,0,0,0.429642228169954,0.464033759878494,0.398095888698616,0,0,0,0,0,0,0.521988583930423,0,0,0.244736704506468,0,0,0.438568099157414,0,0.38582807654183,0,0,0,0,0.276516872303462,0,0,0.163565394255844,0.982829546539238,0.491545817507439,0,0,0.213383459388282,0,0,0,0.139879507719444,0,1.66262682694747,0,0,0.327628914576042,0.169732529954025,0,0.123935764259002,0,0,0,0,0,0,0.578063025868136,0,0.798169295285756,0.615349092722265,0,0.138314504928436,0.645902582527404,0,0.0981477185010256,0.11796972334774,0,0.115525666150338,0,0,0.198916222116275,0.150420656698515,0,0,0,0.163771917510097,0,0.337687923091973,0.781078098613847,0.826747186004736,0.380494861163441,1.64092442705466,0,0,0.175871244359621,0.255524855279191,0,0.336283722218824,0,0,0,0.230467975111559,0,0.475788130837822,0.197318320688547,0.236387681767936,0,0.078493092850514,0.471346769748006,0.840816489941367,0,0,0,0.214429632529969,0.158013611732727,0.116241425368125,0,0,0.207216164163037,0.17071847709395,0,0,0,0.0852134047591577,0,0.22910686854405,0,0,0,0.098150233615243,0,0.647428837187895,0.410651227424988,0,0,0.233939463462106,0.994753875806841,0.237840181555137,0.33883824611688,0.329821550236287,0.754814217833368,0,0.218559560503957,0.470317296361523,0.245148321753905,0.471353094203252,0.785233868459781,0.297046400327086,0.4226557275834,0,0.187967835959707,0.257831551894309,0,0.178553938605658,0.352894871715692,0.240724100067505,0,0,0.143339583151451,0.315543124386369,0.543931921527318,1.30905207102113,0,0.371995018166751,0,0,0,0.218531143927391,0,0.509944148709909,0.26721740526556,0.551369397209069,0,0.833565680400634,1.33982065078089,0.829169439458779,0,0,0.23806443146374,0,0,0.112131862580613,0.0636471582781649,0.202117188958219,0.217716747896961,1.02669990325584,0.0673520530145875,0.143444410785353,0.332660356546013,0.325613074443898,0.213454691755431,0,0.0898252021065869,0,0,0,0,0.201273793591026,0.320568492303233 | |||
|short_description=p7@NGRN | |||
}} |
Latest revision as of 19:34, 19 September 2015
Short description: | p7@NGRN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_NGRN_5end |
Coexpression cluster: | C123_CD19_Natural_CD8_CD4_CD14_Peripheral_Basophils |
Association with transcript: | 439bp_to_NR_028052, uc002bpg.1_5end |
EntrezGene: | NGRN |
HGNC: | 18077 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta T cell | 3.26e-23 | 6 |
lymphoid lineage restricted progenitor cell | 8.24e-18 | 52 |
lymphocyte | 2.15e-17 | 53 |
common lymphoid progenitor | 2.15e-17 | 53 |
mature alpha-beta T cell | 2.34e-16 | 18 |
alpha-beta T cell | 2.34e-16 | 18 |
immature T cell | 2.34e-16 | 18 |
mature T cell | 2.34e-16 | 18 |
immature alpha-beta T cell | 2.34e-16 | 18 |
natural killer cell | 5.73e-13 | 3 |
pro-NK cell | 5.73e-13 | 3 |
leukocyte | 1.15e-12 | 136 |
single nucleate cell | 3.36e-12 | 3 |
naive T cell | 3.36e-12 | 3 |
mononuclear cell | 3.36e-12 | 3 |
basophil | 3.62e-12 | 3 |
nongranular leukocyte | 5.28e-12 | 115 |
T cell | 2.81e-11 | 25 |
pro-T cell | 2.81e-11 | 25 |
hematopoietic stem cell | 4.37e-09 | 168 |
regulatory T cell | 1.38e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.38e-08 | 2 |
naive regulatory T cell | 1.38e-08 | 2 |
hematopoietic cell | 2.55e-08 | 177 |
hematopoietic lineage restricted progenitor cell | 5.29e-08 | 120 |
hematopoietic oligopotent progenitor cell | 4.66e-07 | 161 |
hematopoietic multipotent progenitor cell | 4.66e-07 | 161 |