FFCP PHASE1:Hg19::chr19:54676833..54676838,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:54676833..54676838,-
|short_description=p3@TMC4
|description=CAGE_peak_3_at_TMC4_5end
|association_with_transcript=15bp_to_ENST00000476013,ENST00000479750...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=147798 | |EntrezGene=147798 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22998 | |HGNC=22998 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=15bp_to_ENST00000476013,ENST00000479750_5end | |||
|cluster_id=chr19:54676833..54676838,- | |||
|coexpression_cluster_id=C3821 | |||
|description=CAGE_peak_3_at_TMC4_5end | |||
|id=chr19:54676833..54676838,- | |||
|ontology_enrichment_celltype=CL:0000066!3.09e-15!254;CL:0002076!2.48e-14!43;CL:0000223!3.03e-11!59;CL:0002251!2.56e-09!21 | |||
|ontology_enrichment_celltype_v019=CL:0002541;5.42e-10;3!CL:0002231;1.77e-09;3!CL:0002076;3.43e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,6.97e-10,3;CL:0002231,1.43e-09,3;CL:0000066,1.23e-08,253;CL:0002076,2.35e-07,42 | |||
|ontology_enrichment_development_v019=UBERON:0007297;1.41e-07;2 | |||
|ontology_enrichment_disease=DOID:305!1.13e-14!106;DOID:299!5.48e-12!25;DOID:0050687!9.04e-11!143;DOID:1749!2.19e-09!14;DOID:5093!2.33e-07!4;DOID:1612!2.33e-07!4 | |||
|ontology_enrichment_disease_v019=DOID:5093;4.87e-13;4!DOID:1612;4.87e-13;4!DOID:299;6.53e-13;25 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,3.42e-13,4;DOID:1612,3.42e-13,4;DOID:299,7.85e-13,25;DOID:305,4.76e-09,106;DOID:0050687,9.15e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!7.48e-23!169;UBERON:0000925!7.48e-23!169;UBERON:0006595!7.48e-23!169;UBERON:0001007!9.73e-19!155;UBERON:0001555!9.73e-19!155;UBERON:0007026!9.73e-19!155;UBERON:0004921!1.03e-14!129;UBERON:0004185!1.03e-14!129;UBERON:0000077!2.36e-11!130;UBERON:0005911!4.76e-11!82;UBERON:0000464!1.95e-10!104;UBERON:0000466!6.68e-10!126;UBERON:0001004!1.48e-09!72;UBERON:0005409!7.44e-09!35;UBERON:0000344!7.86e-09!12;UBERON:0000161!1.28e-08!35;UBERON:0000160!1.36e-08!27;UBERON:0005156!5.01e-08!59;UBERON:0000990!5.01e-08!59;UBERON:0002294!1.65e-07!7;UBERON:0001173!1.65e-07!7;UBERON:0004912!1.65e-07!7;UBERON:0005153!1.82e-07!37;UBERON:0006554!1.88e-07!44;UBERON:0001008!3.58e-07!45;UBERON:0001046!6.39e-07!19;UBERON:0003101!8.85e-07!22;UBERON:0000079!8.85e-07!22;UBERON:0000974!9.12e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;1.39e-12;33!UBERON:0000160;2.03e-12;17!UBERON:0005409;1.92e-11;22!UBERON:0006947;1.97e-10;3!UBERON:0004054;1.97e-10;3!UBERON:0003124;5.42e-10;3!UBERON:0000920;5.42e-10;3!UBERON:0000059;1.78e-09;11!UBERON:0005904;6.59e-08;4!UBERON:0000058;6.59e-08;10!UBERON:0002294;2.12e-07;7!UBERON:0001173;2.12e-07;7!UBERON:0005631;2.77e-07;10!UBERON:0000158;2.77e-07;10!UBERON:0003127;3.92e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.18e-13,160;UBERON:0000925,1.18e-13,160;UBERON:0006595,1.18e-13,160;UBERON:0000160,7.42e-13,17;UBERON:0006947,1.99e-10,3;UBERON:0004054,1.99e-10,3;UBERON:0004921,2.20e-10,118;UBERON:0005409,3.57e-10,25;UBERON:0000059,6.86e-10,11;UBERON:0000920,6.97e-10,3;UBERON:0001007,7.68e-10,145;UBERON:0001555,7.68e-10,145;UBERON:0007026,7.68e-10,145;UBERON:0005904,6.64e-08,4;UBERON:0003127,2.45e-07,2;UBERON:0003124,3.20e-07,7;UBERON:0005631,4.29e-07,14;UBERON:0000158,4.29e-07,14;UBERON:0001046,9.84e-07,19 | |||
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| ||
|short_description=p3@TMC4 | |||
}} | }} |
Latest revision as of 21:15, 19 September 2015
Short description: | p3@TMC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TMC4_5end |
Coexpression cluster: | C3821_lung_seminal_small_salivary_parotid_ductus_colon |
Association with transcript: | 15bp_to_ENST00000476013, ENST00000479750_5end |
EntrezGene: | TMC4 |
HGNC: | 22998 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 6.97e-10 | 3 |
epithelial cell of prostate | 1.43e-09 | 3 |
epithelial cell | 1.23e-08 | 253 |
endo-epithelial cell | 2.35e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.18e-13 | 160 |
endoderm | 1.18e-13 | 160 |
presumptive endoderm | 1.18e-13 | 160 |
intestine | 7.42e-13 | 17 |
male genital duct | 1.99e-10 | 3 |
internal male genitalia | 1.99e-10 | 3 |
subdivision of digestive tract | 2.20e-10 | 118 |
gastrointestinal system | 3.57e-10 | 25 |
large intestine | 6.86e-10 | 11 |
egg chorion | 6.97e-10 | 3 |
digestive system | 7.68e-10 | 145 |
digestive tract | 7.68e-10 | 145 |
primitive gut | 7.68e-10 | 145 |
duct of male reproductive system | 6.64e-08 | 4 |
open tracheal system trachea | 2.45e-07 | 2 |
chorion | 3.20e-07 | 7 |
extraembryonic membrane | 4.29e-07 | 14 |
membranous layer | 4.29e-07 | 14 |
hindgut | 9.84e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 3.42e-13 | 4 |
breast cancer | 3.42e-13 | 4 |
adenocarcinoma | 7.85e-13 | 25 |
carcinoma | 4.76e-09 | 106 |
cell type cancer | 9.15e-07 | 143 |