FFCP PHASE1:Hg19::chr11:71640071..71640109,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:71640071..71640109,+ to FFCP PHASE1:Hg19::chr11:71640071..71640109,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55298 | |EntrezGene=55298 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21070 | |HGNC=21070 | ||
|TSSclassifier=strong | |||
|UniProt=F8WDV7,C9JQY5,E9PRV6,E9PN80,E9PKE9,B3KSW8 | |UniProt=F8WDV7,C9JQY5,E9PRV6,E9PN80,E9PKE9,B3KSW8 | ||
|association_with_transcript=0bp_to_ENST00000393711,ENST00000393713,ENST00000490867,ENST00000526549,ENST00000528683,ENST00000530655,ENST00000533380,ENST00000545854_5end | |||
|cluster_id=chr11:71640071..71640109,+ | |||
|description=CAGE_peak_1_at_RNF121_5end | |||
|id=chr11:71640071..71640109,+ | |||
|ontology_enrichment_celltype=CL:0002321!1.75e-10!248;CL:0000220!4.62e-10!246;CL:0000071!7.11e-08!18;CL:0002546!7.11e-08!18;CL:0002139!1.18e-07!24;CL:0000222!3.50e-07!119;CL:0000359!5.62e-07!32;CL:0000066!6.26e-07!254;CL:1000413!6.45e-07!9;CL:0000055!7.88e-07!180;CL:0000115!9.86e-07!35 | |||
|ontology_enrichment_celltype_v019=CL:0000071;4.86e-08;18!CL:0002139;8.04e-08;24!CL:1000413;5.79e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.29e-10,250;CL:0000071,7.11e-08,18;CL:0002546,7.11e-08,18;CL:0002139,1.18e-07,24;CL:0000066,3.63e-07,253;CL:0000222,5.00e-07,121;CL:0000359,5.62e-07,32;CL:0000115,5.75e-07,36;CL:1000413,6.45e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002546;4.86e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001637!2.92e-13!42;UBERON:0003509!2.92e-13!42;UBERON:0004572!2.92e-13!42;UBERON:0002049!3.40e-13!79;UBERON:0007798!3.40e-13!79;UBERON:0001981!1.36e-12!60;UBERON:0007500!1.36e-12!60;UBERON:0004537!1.36e-12!60;UBERON:0006965!1.36e-12!60;UBERON:0003914!3.60e-12!118;UBERON:0000055!5.97e-12!69;UBERON:0004872!1.75e-11!84;UBERON:0004573!5.75e-10!33;UBERON:0004571!5.75e-10!33;UBERON:0000490!1.96e-09!138;UBERON:0004111!1.37e-08!241;UBERON:0000477!1.61e-08!286;UBERON:0004535!2.98e-08!110;UBERON:0000025!3.74e-08!194;UBERON:0001009!5.93e-08!113;UBERON:0001986!7.11e-08!18;UBERON:0004638!7.11e-08!18;UBERON:0004852!7.11e-08!18;UBERON:0000487!5.44e-07!22;UBERON:0003915!6.45e-07!9;UBERON:0004700!6.45e-07!9;UBERON:0001917!6.45e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;7.01e-11;42!UBERON:0003509;7.01e-11;42!UBERON:0004572;7.01e-11;42!UBERON:0004573;4.63e-09;33!UBERON:0004571;4.63e-09;33!UBERON:0007500;1.86e-08;56!UBERON:0001981;1.86e-08;56!UBERON:0004537;1.86e-08;56!UBERON:0004638;4.86e-08;18!UBERON:0001986;4.86e-08;18!UBERON:0004852;4.86e-08;18!UBERON:0000055;3.19e-07;65!UBERON:0000487;4.25e-07;22!UBERON:0003915;5.79e-07;9!UBERON:0004700;5.79e-07;9!UBERON:0001917;5.79e-07;9!UBERON:0003914;8.89e-07;74 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,2.92e-13,42;UBERON:0003509,2.92e-13,42;UBERON:0004572,2.92e-13,42;UBERON:0002049,8.07e-13,78;UBERON:0007798,8.07e-13,78;UBERON:0003914,1.16e-12,117;UBERON:0007500,3.36e-12,59;UBERON:0001981,3.36e-12,59;UBERON:0004537,3.36e-12,59;UBERON:0006965,3.36e-12,59;UBERON:0000055,1.41e-11,68;UBERON:0004872,3.93e-11,83;UBERON:0004573,5.75e-10,33;UBERON:0004571,5.75e-10,33;UBERON:0004111,3.26e-09,240;UBERON:0000025,8.37e-09,192;UBERON:0000490,2.05e-08,148;UBERON:0004535,5.70e-08,109;UBERON:0004638,7.11e-08,18;UBERON:0001986,7.11e-08,18;UBERON:0004852,7.11e-08,18;UBERON:0001009,1.12e-07,112;UBERON:0000487,5.44e-07,22;UBERON:0003915,6.45e-07,9;UBERON:0004700,6.45e-07,9;UBERON:0001917,6.45e-07,9 | |||
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| ||
|short_description=p1@RNF121 | |||
}} | }} |
Latest revision as of 23:58, 19 September 2015
Short description: | p1@RNF121 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RNF121_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000393711, ENST00000393713, ENST00000490867, ENST00000526549, ENST00000528683, ENST00000530655, ENST00000533380, ENST00000545854_5end |
EntrezGene: | RNF121 |
HGNC: | 21070 |
UniProt: | F8WDV7C9JQY5E9PRV6E9PN80E9PKE9B3KSW8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.29e-10 | 250 |
blood vessel endothelial cell | 7.11e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 7.11e-08 | 18 |
endothelial cell of vascular tree | 1.18e-07 | 24 |
epithelial cell | 3.63e-07 | 253 |
mesodermal cell | 5.00e-07 | 121 |
vascular associated smooth muscle cell | 5.62e-07 | 32 |
endothelial cell | 5.75e-07 | 36 |
endothelial cell of artery | 6.45e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
artery | 2.92e-13 | 42 |
arterial blood vessel | 2.92e-13 | 42 |
arterial system | 2.92e-13 | 42 |
vasculature | 8.07e-13 | 78 |
vascular system | 8.07e-13 | 78 |
epithelial tube | 1.16e-12 | 117 |
epithelial tube open at both ends | 3.36e-12 | 59 |
blood vessel | 3.36e-12 | 59 |
blood vasculature | 3.36e-12 | 59 |
vascular cord | 3.36e-12 | 59 |
vessel | 1.41e-11 | 68 |
splanchnic layer of lateral plate mesoderm | 3.93e-11 | 83 |
systemic artery | 5.75e-10 | 33 |
systemic arterial system | 5.75e-10 | 33 |
anatomical conduit | 3.26e-09 | 240 |
tube | 8.37e-09 | 192 |
unilaminar epithelium | 2.05e-08 | 148 |
cardiovascular system | 5.70e-08 | 109 |
blood vessel endothelium | 7.11e-08 | 18 |
endothelium | 7.11e-08 | 18 |
cardiovascular system endothelium | 7.11e-08 | 18 |
circulatory system | 1.12e-07 | 112 |
simple squamous epithelium | 5.44e-07 | 22 |
endothelial tube | 6.45e-07 | 9 |
arterial system endothelium | 6.45e-07 | 9 |
endothelium of artery | 6.45e-07 | 9 |