FFCP PHASE1:Hg19::chrX:152773922..152773952,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=633 | |EntrezGene=633 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=1044 | |HGNC=1044 | ||
|TSSclassifier=strong | |||
|UniProt=P21810 | |UniProt=P21810 | ||
|association_with_transcript=46bp_to_U11686_5end | |association_with_transcript=46bp_to_U11686_5end | ||
|cluster_id=chrX:152773922..152773952,+ | |||
|coexpression_cluster_id=C288 | |coexpression_cluster_id=C288 | ||
|description=CAGE_peak_16_at_BGN_5end | |description=CAGE_peak_16_at_BGN_5end | ||
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|ontology_enrichment_celltype=CL:0000055!2.22e-19!180;CL:0000057!1.23e-15!75;CL:0000222!2.47e-09!119;CL:0000183!4.44e-08!59;CL:0000359!7.07e-08!32;CL:0000187!2.36e-07!54;CL:0000680!3.02e-07!57;CL:0000056!3.02e-07!57;CL:0000355!3.02e-07!57 | |ontology_enrichment_celltype=CL:0000055!2.22e-19!180;CL:0000057!1.23e-15!75;CL:0000222!2.47e-09!119;CL:0000183!4.44e-08!59;CL:0000359!7.07e-08!32;CL:0000187!2.36e-07!54;CL:0000680!3.02e-07!57;CL:0000056!3.02e-07!57;CL:0000355!3.02e-07!57 | ||
|ontology_enrichment_celltype_v019=CL:0000327;1.91e-10;15!CL:0002620;3.18e-10;23!CL:0000359;6.02e-09;32!CL:0000153;5.87e-08;9!CL:0000447;5.87e-08;9!CL:0000499;1.23e-07;28!CL:0000138;4.59e-07;6 | |ontology_enrichment_celltype_v019=CL:0000327;1.91e-10;15!CL:0002620;3.18e-10;23!CL:0000359;6.02e-09;32!CL:0000153;5.87e-08;9!CL:0000447;5.87e-08;9!CL:0000499;1.23e-07;28!CL:0000138;4.59e-07;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.02e-16,76;CL:0002620,1.22e-10,23;CL:0000327,1.23e-10,15;CL:0000048,2.59e-09,427;CL:0000723,7.51e-09,433;CL:0000359,1.01e-08,32;CL:0000034,2.92e-08,441;CL:0000153,4.24e-08,9;CL:0000447,4.24e-08,9;CL:0000499,8.28e-08,28;CL:0000058,3.36e-07,6;CL:0000138,3.36e-07,6 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2=DOID:17,3.09e-07,5;DOID:450,3.09e-07,5;DOID:66,3.09e-07,5;DOID:423,3.09e-07,5;DOID:0080000,3.09e-07,5;DOID:11722,3.09e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0004872!9.26e-19!84;UBERON:0002049!7.08e-18!79;UBERON:0007798!7.08e-18!79;UBERON:0001009!2.00e-17!113;UBERON:0004535!1.14e-16!110;UBERON:0000055!2.30e-15!69;UBERON:0001981!1.96e-13!60;UBERON:0007500!1.96e-13!60;UBERON:0004537!1.96e-13!60;UBERON:0006965!1.96e-13!60;UBERON:0000477!4.34e-12!286;UBERON:0001637!1.52e-11!42;UBERON:0003509!1.52e-11!42;UBERON:0004572!1.52e-11!42;UBERON:0004111!5.12e-11!241;UBERON:0003914!5.81e-11!118;UBERON:0004573!4.18e-09!33;UBERON:0004571!4.18e-09!33;UBERON:0000025!5.41e-09!194;UBERON:0007100!3.52e-08!27;UBERON:0000119!4.99e-08!312;UBERON:0000948!1.79e-07!24;UBERON:0005498!1.79e-07!24;UBERON:0004140!1.79e-07!24;UBERON:0009881!1.79e-07!24;UBERON:0004141!1.79e-07!24;UBERON:0003084!1.79e-07!24;UBERON:0007005!1.79e-07!24;UBERON:0004139!1.79e-07!24;UBERON:0004291!1.79e-07!24;UBERON:0000483!2.92e-07!309;UBERON:0001134!9.20e-07!61;UBERON:0002036!9.20e-07!61;UBERON:0003082!9.20e-07!61 | |ontology_enrichment_uberon=UBERON:0004872!9.26e-19!84;UBERON:0002049!7.08e-18!79;UBERON:0007798!7.08e-18!79;UBERON:0001009!2.00e-17!113;UBERON:0004535!1.14e-16!110;UBERON:0000055!2.30e-15!69;UBERON:0001981!1.96e-13!60;UBERON:0007500!1.96e-13!60;UBERON:0004537!1.96e-13!60;UBERON:0006965!1.96e-13!60;UBERON:0000477!4.34e-12!286;UBERON:0001637!1.52e-11!42;UBERON:0003509!1.52e-11!42;UBERON:0004572!1.52e-11!42;UBERON:0004111!5.12e-11!241;UBERON:0003914!5.81e-11!118;UBERON:0004573!4.18e-09!33;UBERON:0004571!4.18e-09!33;UBERON:0000025!5.41e-09!194;UBERON:0007100!3.52e-08!27;UBERON:0000119!4.99e-08!312;UBERON:0000948!1.79e-07!24;UBERON:0005498!1.79e-07!24;UBERON:0004140!1.79e-07!24;UBERON:0009881!1.79e-07!24;UBERON:0004141!1.79e-07!24;UBERON:0003084!1.79e-07!24;UBERON:0007005!1.79e-07!24;UBERON:0004139!1.79e-07!24;UBERON:0004291!1.79e-07!24;UBERON:0000483!2.92e-07!309;UBERON:0001134!9.20e-07!61;UBERON:0002036!9.20e-07!61;UBERON:0003082!9.20e-07!61 | ||
|ontology_enrichment_uberon_v019=UBERON:0004573;4.19e-09;33!UBERON:0004571;4.19e-09;33!UBERON:0001637;4.19e-09;42!UBERON:0003509;4.19e-09;42!UBERON:0004572;4.19e-09;42!UBERON:0000947;4.95e-08;21!UBERON:0010191;4.95e-08;21!UBERON:0000948;9.94e-07;22 | |ontology_enrichment_uberon_v019=UBERON:0004573;4.19e-09;33!UBERON:0004571;4.19e-09;33!UBERON:0001637;4.19e-09;42!UBERON:0003509;4.19e-09;42!UBERON:0004572;4.19e-09;42!UBERON:0000947;4.95e-08;21!UBERON:0010191;4.95e-08;21!UBERON:0000948;9.94e-07;22 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004872,2.74e-16,83;UBERON:0001009,1.21e-12,112;UBERON:0004535,1.66e-12,109;UBERON:0002049,3.78e-12,78;UBERON:0007798,3.78e-12,78;UBERON:0000055,6.61e-12,68;UBERON:0001637,2.44e-11,42;UBERON:0003509,2.44e-11,42;UBERON:0004572,2.44e-11,42;UBERON:0007500,1.04e-10,59;UBERON:0001981,1.04e-10,59;UBERON:0004537,1.04e-10,59;UBERON:0006965,1.04e-10,59;UBERON:0003914,1.33e-10,117;UBERON:0004573,3.70e-10,33;UBERON:0004571,3.70e-10,33;UBERON:0002199,4.72e-09,46;UBERON:0002416,4.72e-09,46;UBERON:0002097,1.20e-08,41;UBERON:0000947,7.05e-08,21;UBERON:0010191,7.05e-08,21;UBERON:0000948,3.20e-07,24;UBERON:0005498,3.20e-07,24;UBERON:0004140,3.20e-07,24;UBERON:0009881,3.20e-07,24;UBERON:0004141,3.20e-07,24;UBERON:0003084,3.20e-07,24;UBERON:0007005,3.20e-07,24;UBERON:0004139,3.20e-07,24;UBERON:0004291,3.20e-07,24;UBERON:0007100,3.83e-07,27 | |||
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| ||
|short_description=p16@BGN | |short_description=p16@BGN | ||
}} | }} |
Latest revision as of 00:07, 20 September 2015
Short description: | p16@BGN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_BGN_5end |
Coexpression cluster: | C288_Chondrocyte_Renal_Pericytes_Fibroblast_aorta_Smooth_Meningeal |
Association with transcript: | 46bp_to_U11686_5end |
EntrezGene: | BGN |
HGNC: | 1044 |
UniProt: | P21810 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.02e-16 | 76 |
skin fibroblast | 1.22e-10 | 23 |
extracellular matrix secreting cell | 1.23e-10 | 15 |
multi fate stem cell | 2.59e-09 | 427 |
somatic stem cell | 7.51e-09 | 433 |
vascular associated smooth muscle cell | 1.01e-08 | 32 |
stem cell | 2.92e-08 | 441 |
GAG secreting cell | 4.24e-08 | 9 |
carbohydrate secreting cell | 4.24e-08 | 9 |
stromal cell | 8.28e-08 | 28 |
chondroblast | 3.36e-07 | 6 |
chondrocyte | 3.36e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
splanchnic layer of lateral plate mesoderm | 2.74e-16 | 83 |
circulatory system | 1.21e-12 | 112 |
cardiovascular system | 1.66e-12 | 109 |
vasculature | 3.78e-12 | 78 |
vascular system | 3.78e-12 | 78 |
vessel | 6.61e-12 | 68 |
artery | 2.44e-11 | 42 |
arterial blood vessel | 2.44e-11 | 42 |
arterial system | 2.44e-11 | 42 |
epithelial tube open at both ends | 1.04e-10 | 59 |
blood vessel | 1.04e-10 | 59 |
blood vasculature | 1.04e-10 | 59 |
vascular cord | 1.04e-10 | 59 |
epithelial tube | 1.33e-10 | 117 |
systemic artery | 3.70e-10 | 33 |
systemic arterial system | 3.70e-10 | 33 |
integument | 4.72e-09 | 46 |
integumental system | 4.72e-09 | 46 |
skin of body | 1.20e-08 | 41 |
aorta | 7.05e-08 | 21 |
aortic system | 7.05e-08 | 21 |
heart | 3.20e-07 | 24 |
primitive heart tube | 3.20e-07 | 24 |
primary heart field | 3.20e-07 | 24 |
anterior lateral plate mesoderm | 3.20e-07 | 24 |
heart tube | 3.20e-07 | 24 |
heart primordium | 3.20e-07 | 24 |
cardiac mesoderm | 3.20e-07 | 24 |
cardiogenic plate | 3.20e-07 | 24 |
heart rudiment | 3.20e-07 | 24 |
primary circulatory organ | 3.83e-07 | 27 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 3.09e-07 | 5 |
myotonic disease | 3.09e-07 | 5 |
muscle tissue disease | 3.09e-07 | 5 |
myopathy | 3.09e-07 | 5 |
muscular disease | 3.09e-07 | 5 |
myotonic dystrophy | 3.09e-07 | 5 |