FFCP PHASE1:Hg19::chr2:216245579..216245596,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:216245579..216245596,- to FFCP PHASE1:Hg19::chr2:216245579..216245596,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2335 | |EntrezGene=2335 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3778 | |HGNC=3778 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=455bp_to_ENST00000474036_5end | |||
|cluster_id=chr2:216245579..216245596,- | |||
|coexpression_cluster_id=C79 | |||
|description=CAGE_peak_57_at_FN1_5end | |||
|id=chr2:216245579..216245596,- | |||
|ontology_enrichment_celltype=CL:0000055!4.81e-31!180;CL:0000057!2.76e-24!75;CL:0002371!1.24e-15!591;CL:0000680!2.32e-15!57;CL:0000056!2.32e-15!57;CL:0000355!2.32e-15!57;CL:0000183!7.61e-15!59;CL:0000144!1.39e-14!625;CL:0000187!4.59e-14!54;CL:0000048!1.89e-11!430;CL:0000548!2.73e-11!679;CL:0000004!2.73e-11!679;CL:0000255!2.73e-11!679;CL:0002620!3.20e-11!23;CL:0000393!4.65e-11!60;CL:0000211!4.65e-11!60;CL:0000012!7.41e-11!682;CL:0000723!8.14e-11!436;CL:0000034!1.78e-10!444;CL:0000222!1.12e-09!119;CL:0000192!1.47e-09!42;CL:0000514!1.47e-09!42;CL:0002334!2.54e-08!12;CL:0002494!2.73e-08!16;CL:0000220!6.75e-08!246;CL:0002321!7.64e-08!248;CL:0000359!4.91e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0002334;6.03e-13;12!CL:0002620;2.01e-11;23!CL:0000057;5.78e-11;73!CL:0002494;2.15e-09;16!CL:0002548;1.22e-07;6!CL:0000349;1.71e-07;19!CL:0000723;3.35e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.17e-26,76;CL:0000048,8.03e-14,427;CL:0000723,3.46e-13,433;CL:0002334,1.40e-12,12;CL:0000034,2.26e-12,441;CL:0002620,2.35e-11,23;CL:0000680,1.77e-09,58;CL:0000056,1.77e-09,58;CL:0000355,1.77e-09,58;CL:0002494,2.27e-09,16;CL:0002320,1.12e-08,361;CL:0000187,1.18e-08,55;CL:0002548,1.18e-07,6;CL:0000349,1.35e-07,19;CL:0000134,2.27e-07,354;CL:0000393,3.98e-07,61;CL:0000211,3.98e-07,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!5.55e-18!83;UBERON:0002329!5.55e-18!83;UBERON:0003077!5.55e-18!83;UBERON:0003059!5.55e-18!83;UBERON:0007282!5.55e-18!83;UBERON:0009618!5.55e-18!83;UBERON:0007285!5.55e-18!83;UBERON:0004290!5.05e-16!70;UBERON:0000486!1.53e-15!82;UBERON:0005256!7.92e-15!143;UBERON:0001134!3.37e-13!61;UBERON:0002036!3.37e-13!61;UBERON:0003082!3.37e-13!61;UBERON:0002385!3.06e-12!63;UBERON:0001015!3.06e-12!63;UBERON:0000383!3.06e-12!63;UBERON:0004872!2.78e-10!84;UBERON:0002100!3.85e-10!216;UBERON:0000490!1.50e-09!138;UBERON:0003914!1.10e-08!118;UBERON:0002199!1.72e-08!45;UBERON:0002416!1.72e-08!45;UBERON:0002097!1.89e-08!40;UBERON:0004535!2.79e-08!110;UBERON:0002049!4.83e-08!79;UBERON:0007798!4.83e-08!79;UBERON:0001009!6.69e-08!113;UBERON:0003102!1.30e-07!95;UBERON:0001637!1.44e-07!42;UBERON:0003509!1.44e-07!42;UBERON:0004572!1.44e-07!42;UBERON:0000948!4.57e-07!24;UBERON:0005498!4.57e-07!24;UBERON:0004140!4.57e-07!24;UBERON:0009881!4.57e-07!24;UBERON:0004141!4.57e-07!24;UBERON:0003084!4.57e-07!24;UBERON:0007005!4.57e-07!24;UBERON:0004139!4.57e-07!24;UBERON:0004291!4.57e-07!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;5.83e-08;41!UBERON:0005631;1.12e-07;10!UBERON:0000158;1.12e-07;10!UBERON:0002199;1.88e-07;46!UBERON:0002416;1.88e-07;46!UBERON:0000948;5.06e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,5.76e-11,73;UBERON:0002329,1.00e-10,71;UBERON:0003059,1.00e-10,71;UBERON:0007282,1.00e-10,71;UBERON:0004290,1.00e-10,71;UBERON:0009618,1.00e-10,71;UBERON:0003077,1.91e-10,72;UBERON:0007285,1.91e-10,72;UBERON:0002199,5.53e-10,46;UBERON:0002416,5.53e-10,46;UBERON:0002097,6.72e-10,41;UBERON:0002384,8.53e-10,371;UBERON:0007503,1.44e-09,78;UBERON:0000486,2.63e-09,83;UBERON:0001134,2.24e-08,62;UBERON:0002036,2.24e-08,62;UBERON:0003082,2.24e-08,62;UBERON:0000948,2.88e-08,24;UBERON:0005498,2.88e-08,24;UBERON:0004140,2.88e-08,24;UBERON:0009881,2.88e-08,24;UBERON:0004141,2.88e-08,24;UBERON:0003084,2.88e-08,24;UBERON:0007005,2.88e-08,24;UBERON:0004139,2.88e-08,24;UBERON:0004291,2.88e-08,24;UBERON:0005631,3.62e-08,14;UBERON:0000158,3.62e-08,14;UBERON:0002385,6.97e-08,64;UBERON:0001015,6.97e-08,64;UBERON:0000383,6.97e-08,64;UBERON:0004923,2.06e-07,66;UBERON:0007100,6.44e-07,27 | |||
|phase1_expression=1.2717486548939,2.5692062866918,1.26858963686374,1.0007329835313,0,3.48935409640147,0,0,0.261185628199839,0.491467873003018,0,1.96597234917155,4.48403862988371,1.48519623552056,0.994192127183747,4.03395087871065,1.20538905604795,0.730310090387373,0.487932798790507,0.246242116153576,0.612002073732759,0.626909442956176,0,0,0.502170558379211,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.2568239576754,6.03630773733273,1.40648818027883,0.361439152384566,0.50133791063589,0.724232594804119,4.7717156823066,2.91980922181582,0.189069634328136,0.443458794925128,0.614843499851882,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0.56530794192401,0.419499436209906,0.275118041940067,0.417989933073621,0,0.35576626268671,0.33472061276467,0,0,0,0.367663080345869,0.81014194788176,0.0892997282840798,0,0.450445921933289,0,0,0,0,0,0,4.96971951695318,2.91250176828533,6.22323149822128,10.0392817262085,1.77334191099179,1.68203280042692,3.20246987189115,4.19334832309172,3.42332138939743,2.15537075311501,1.30769522490767,4.8434376846378,16.70910180992,0.234321431833797,1.24864030732128,1.1409436430889,1.94283284717341,0.704606991862589,1.13311061057692,0.98315564691574,0.408308342509787,0.737005903870608,0.723280468230358,0,1.97813543422845,0.910161361938026,0,0.336672227908132,1.00094815897571,0.277064115484183,0.438977620880838,1.5324389789951,1.05166641234618,1.70148274740032,4.66413052791041,1.49490172172997,3.60284231971255,3.30100205692843,1.23663035086127,4.3798891807757,1.67505170698431,2.53164498361899,0.974370051611986,6.56327813034698,1.47279837827679,1.13152239773168,5.68015348026583,0.906768884048762,1.01736355386293,0.773043412653187,0.545492241181669,0,0.243947412259191,0,0.348581828608555,0,0.252320850875628,0,0,5.14592750554308,1.38134921352481,2.3218396401599,2.16563844500876,0.118306800039844,0,0,0,0,0,0,0,0,0,1.40241773803446,1.2347220339942,0,0,0.982827216677626,0,0,0.245976877086227,0,0.219500570817251,0,0,0,0.325808305310325,0,0,0,2.93521735589554,0,0.462985512576611,0.190254152234598,0,0,0,0,0,0,0.16798212819886,0.141775097242386,2.05984602216551,1.74380363108377,1.15014803749563,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0.571652865261156,0.224262168690721,2.1798003441664,0.95339771567235,0.517086863031111,7.15312891703765,3.381211010224,0.531876233169741,0,2.82928111688356,1.41849132023278,0,0.428933980974443,1.62786481617433,0.823240336780769,0.325736184293735,0.710783897485092,0,0.301439377059586,0.871533458600294,0.099972991182057,0,0,0,1.19812427745791,0,0,1.15825045334063,2.67119219315498,0.895304816199478,0,0,0,0,0,0,0,0,0,0,0,0,1.10422342547226,5.00170521059677,0.542530047399471,2.07970861530807,6.78030157429215,1.10391690523754,2.6942525448324,0.902838299183157,0,1.03473071292505,2.65690239414175,2.02806085395873,0.781952530212746,1.17480694477644,1.02943027143257,0,0,0,0,3.32870879020994,3.32629322662648,2.72918588600655,3.22270143904931,5.05188169979532,1.40953064181271,4.60536524160033,2.57366273829772,2.96836132889982,1.23367755042124,2.13074070375753,1.14978018419333,1.03850885836724,1.04589340613963,0.120859449591622,4.21063587636898,0,0.459257792658427,0.910455840033585,1.57349297951309,0,0.15403067420883,0,0,0.105551628892876,0,0,0.647747748306418,0,0.541892875087706,1.00337954770971,0,0,0.223874754722178,0,0,0,0,0,0.309123034943167,0,0,1.14853107599234,0,0,0.676695028044854,1.54048617114644,1.5350367472613,0.275673144969061,3.22260734604821,4.0604674295984,1.53407929348982,1.15741646340759,2.64455864577565,1.92190067365106,2.04180339991335,0.708104465988849,0,12.277681526395,0,0.308033580176089,0.532306030317022,0,1.29726953372744,0.572499546967965,1.48863347743867,1.89827654831236,1.14378116354295,1.02359116524534,2.1396949401696,0.95460974377781,3.92474320099615,0.539617372749944,1.09814811894422,0.117812402345686,0.404364963146632,0,1.26377536871694,0.975267478179181,0,0,0.272999822815972,0.848432591722276,1.13008116620243,0,3.3171948762061,0.876901770507525,0.578775534266688,2.62357900818653,1.01455188481352,0.92947049429925,0.845086807596724,1.43411352204052,0.785992328104969,3.21003946333125,0.354761064070598,0.211107635297664,2.63435914367922,0,0.349934720244983,0.0962221127255121,0.670302275535787,0,0.0941438007767792,0,1.68471475667626,0,0.918893600827838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.29740072527842,1.18785872333055,1.53580351049616,0,0,5.12020043105367,0,0,0,0,0,0,0,8.3980688668688,0.0898683511473268,0,0,0.197286811273867,0,3.33410970433911,0,0.0927680981618513,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0,0.341826167541004,0,0,0,25.8390939382855,2.01514705484097,75.1579034186275,0,0,0,0,0,0,0,0,0.421996129056054,0,0.282706142867882,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0.789168805698781,0,0.61214552326098,0.063186579628488,0,0,0,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| ||
|short_description=p57@FN1 | |||
}} | }} |
Latest revision as of 02:22, 20 September 2015
Short description: | p57@FN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_57_at_FN1_5end |
Coexpression cluster: | C79_chorionic_Chondrocyte_Cardiac_Smooth_Fibroblast_Preadipocyte_Mesenchymal |
Association with transcript: | 455bp_to_ENST00000474036_5end |
EntrezGene: | FN1 |
HGNC: | 3778 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.17e-26 | 76 |
multi fate stem cell | 8.03e-14 | 427 |
somatic stem cell | 3.46e-13 | 433 |
preadipocyte | 1.40e-12 | 12 |
stem cell | 2.26e-12 | 441 |
skin fibroblast | 2.35e-11 | 23 |
muscle precursor cell | 1.77e-09 | 58 |
myoblast | 1.77e-09 | 58 |
multi-potent skeletal muscle stem cell | 1.77e-09 | 58 |
cardiocyte | 2.27e-09 | 16 |
connective tissue cell | 1.12e-08 | 361 |
muscle cell | 1.18e-08 | 55 |
cardiac fibroblast | 1.18e-07 | 6 |
extraembryonic cell | 1.35e-07 | 19 |
mesenchymal cell | 2.27e-07 | 354 |
electrically responsive cell | 3.98e-07 | 61 |
electrically active cell | 3.98e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 5.76e-11 | 73 |
somite | 1.00e-10 | 71 |
presomitic mesoderm | 1.00e-10 | 71 |
presumptive segmental plate | 1.00e-10 | 71 |
dermomyotome | 1.00e-10 | 71 |
trunk paraxial mesoderm | 1.00e-10 | 71 |
paraxial mesoderm | 1.91e-10 | 72 |
presumptive paraxial mesoderm | 1.91e-10 | 72 |
integument | 5.53e-10 | 46 |
integumental system | 5.53e-10 | 46 |
skin of body | 6.72e-10 | 41 |
connective tissue | 8.53e-10 | 371 |
epithelial vesicle | 1.44e-09 | 78 |
multilaminar epithelium | 2.63e-09 | 83 |
skeletal muscle tissue | 2.24e-08 | 62 |
striated muscle tissue | 2.24e-08 | 62 |
myotome | 2.24e-08 | 62 |
heart | 2.88e-08 | 24 |
primitive heart tube | 2.88e-08 | 24 |
primary heart field | 2.88e-08 | 24 |
anterior lateral plate mesoderm | 2.88e-08 | 24 |
heart tube | 2.88e-08 | 24 |
heart primordium | 2.88e-08 | 24 |
cardiac mesoderm | 2.88e-08 | 24 |
cardiogenic plate | 2.88e-08 | 24 |
heart rudiment | 2.88e-08 | 24 |
extraembryonic membrane | 3.62e-08 | 14 |
membranous layer | 3.62e-08 | 14 |
muscle tissue | 6.97e-08 | 64 |
musculature | 6.97e-08 | 64 |
musculature of body | 6.97e-08 | 64 |
organ component layer | 2.06e-07 | 66 |
primary circulatory organ | 6.44e-07 | 27 |