FFCP PHASE1:Hg19::chr10:99185961..99185987,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5223 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8888 | |||
|TSSclassifier=strong | |||
|UniProt=P18669,Q6FHU2 | |||
|association_with_transcript=-39bp_to_NM_002629,uc001knh.2,uc009xvo.2_5end | |||
|cluster_id=chr10:99185961..99185987,+ | |||
|coexpression_cluster_id=C3065 | |||
|description=CAGE_peak_3_at_PGAM1_5end | |||
|id=chr10:99185961..99185987,+ | |||
|ontology_enrichment_celltype=CL:0002321!1.55e-13!248;CL:0000220!7.32e-13!246;CL:0000548!1.45e-12!679;CL:0000004!1.45e-12!679;CL:0000255!1.45e-12!679;CL:0000055!4.17e-12!180;CL:0000012!9.06e-12!682;CL:0000066!7.30e-10!254;CL:0000144!1.58e-09!625;CL:0000359!7.11e-09!32;CL:0000192!8.86e-09!42;CL:0000514!8.86e-09!42;CL:0000183!1.21e-08!59;CL:0000680!1.75e-08!57;CL:0000056!1.75e-08!57;CL:0000355!1.75e-08!57;CL:0000393!2.06e-08!60;CL:0000211!2.06e-08!60;CL:0000222!6.88e-08!119;CL:0000187!7.84e-08!54;CL:0002371!2.65e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.86e-08;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.12e-13,250;CL:0000066,3.77e-10,253;CL:0000359,7.11e-09,32;CL:0000192,4.09e-08,43;CL:0000514,4.09e-08,43;CL:0000680,6.10e-08,58;CL:0000056,6.10e-08,58;CL:0000355,6.10e-08,58;CL:0000393,6.89e-08,61;CL:0000211,6.89e-08,61;CL:0000222,1.00e-07,121;CL:0000187,2.65e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!4.86e-09!82;UBERON:0000119!1.92e-08!312;UBERON:0000483!4.67e-08!309;UBERON:0004290!1.24e-07!70;UBERON:0001637!2.01e-07!42;UBERON:0003509!2.01e-07!42;UBERON:0004572!2.01e-07!42;UBERON:0000914!2.03e-07!83;UBERON:0002329!2.03e-07!83;UBERON:0003077!2.03e-07!83;UBERON:0003059!2.03e-07!83;UBERON:0007282!2.03e-07!83;UBERON:0009618!2.03e-07!83;UBERON:0007285!2.03e-07!83;UBERON:0000475!5.38e-07!365 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,1.41e-08,83;UBERON:0007503,1.92e-08,78;UBERON:0000119,3.75e-08,309;UBERON:0000483,8.96e-08,306;UBERON:0001637,2.01e-07,42;UBERON:0003509,2.01e-07,42;UBERON:0004572,2.01e-07,42;UBERON:0003077,2.41e-07,72;UBERON:0007285,2.41e-07,72;UBERON:0002329,3.50e-07,71;UBERON:0003059,3.50e-07,71;UBERON:0007282,3.50e-07,71;UBERON:0004290,3.50e-07,71;UBERON:0009618,3.50e-07,71;UBERON:0007524,4.09e-07,73 | |||
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| |||
|short_description=p3@PGAM1 | |||
}} |
Latest revision as of 06:27, 20 September 2015
Short description: | p3@PGAM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PGAM1_5end |
Coexpression cluster: | C3065_anaplastic_Prostate_iPS_HES3GFP_Urothelial_Alveolar_H9 |
Association with transcript: | -39bp_to_NM_002629, uc001knh.2, uc009xvo.2_5end |
EntrezGene: | PGAM1 |
HGNC: | 8888 |
UniProt: | P18669Q6FHU2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.12e-13 | 250 |
epithelial cell | 3.77e-10 | 253 |
vascular associated smooth muscle cell | 7.11e-09 | 32 |
smooth muscle cell | 4.09e-08 | 43 |
smooth muscle myoblast | 4.09e-08 | 43 |
muscle precursor cell | 6.10e-08 | 58 |
myoblast | 6.10e-08 | 58 |
multi-potent skeletal muscle stem cell | 6.10e-08 | 58 |
electrically responsive cell | 6.89e-08 | 61 |
electrically active cell | 6.89e-08 | 61 |
mesodermal cell | 1.00e-07 | 121 |
muscle cell | 2.65e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 1.41e-08 | 83 |
epithelial vesicle | 1.92e-08 | 78 |
cell layer | 3.75e-08 | 309 |
epithelium | 8.96e-08 | 306 |
artery | 2.01e-07 | 42 |
arterial blood vessel | 2.01e-07 | 42 |
arterial system | 2.01e-07 | 42 |
paraxial mesoderm | 2.41e-07 | 72 |
presumptive paraxial mesoderm | 2.41e-07 | 72 |
somite | 3.50e-07 | 71 |
presomitic mesoderm | 3.50e-07 | 71 |
presumptive segmental plate | 3.50e-07 | 71 |
dermomyotome | 3.50e-07 | 71 |
trunk paraxial mesoderm | 3.50e-07 | 71 |
dense mesenchyme tissue | 4.09e-07 | 73 |