FF:11795-124C4: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005585 | |DRA_sample_Accession=CAGE@SAMD00005585 | ||
|accession_numbers=CAGE;DRX008191;DRR009063;DRZ000488;DRZ001873 | |accession_numbers=CAGE;DRX008191;DRR009063;DRZ000488;DRZ001873;DRZ011838;DRZ013223 | ||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | ||
Line 41: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor2.CNhs13205.11795-124C4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor2.CNhs13205.11795-124C4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor2.CNhs13205.11795-124C4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor2.CNhs13205.11795-124C4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor2.CNhs13205.11795-124C4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11795-124C4 | |id=FF:11795-124C4 | ||
|is_a=EFO:0002091;;FF:0000002;;FF:0000210 | |is_a=EFO:0002091;;FF:0000002;;FF:0000210 | ||
Line 46: | Line 51: | ||
|library_id=CNhs13205 | |library_id=CNhs13205 | ||
|library_id_phase_based=2:CNhs13205 | |library_id_phase_based=2:CNhs13205 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11795 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11795 | |||
|name=CD4+CD25-CD45RA+ naive conventional T cells, donor2 | |name=CD4+CD25-CD45RA+ naive conventional T cells, donor2 | ||
|namespace= | |namespace= | ||
Line 53: | Line 62: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |refex=http://refex.dbcls.jp/genelist.php?lang | ||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0573560730249988,0.415848565824586,0.141015267618496,0.272806271758583,0,0,0,0,0,0,0,0,0,0,0.102961957061387,0,0,0.0328084716699422,0,0,0,0,0,0.157946887489539,0,0,0.183048017928581,0,0,0,0,0,0,0,0,0,0,0,0,0.15247472009271,0.138494371357451,0,0,0,0,0,0,0,0.160179751910617,0,0,0,0,0,-0.0839305477320758,0,-0.0969923612426051,0,0,0.00561832984829033,0,0,0,0,0,0,0,0,0.18613148201837,0,1.28914991353992,0,0,0.255904783757597,0,0,0,0,0.0514809785306935,0,0,0,0,-0.0531710420276173,-0.0873006291884384,0,0,0,-0.0752437400617192,0.154729184070146,0,0,0,0,0.0880961307806634,0.173689116070487,0,0,0,0,0,0,0,0,0,0,0,0.0289891188018387,0,0,0,0,0,-0.0448926153917674,0.102961957061387,0,0,0.124823715444844,0.249729730887399,0,0,0,0,0,0 | |repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0573560730249988,0.415848565824586,0.141015267618496,0.272806271758583,0,0,0,0,0,0,0,0,0,0,0.102961957061387,0,0,0.0328084716699422,0,0,0,0,0,0.157946887489539,0,0,0.183048017928581,0,0,0,0,0,0,0,0,0,0,0,0,0.15247472009271,0.138494371357451,0,0,0,0,0,0,0,0.160179751910617,0,0,0,0,0,-0.0839305477320758,0,-0.0969923612426051,0,0,0.00561832984829033,0,0,0,0,0,0,0,0,0.18613148201837,0,1.28914991353992,0,0,0.255904783757597,0,0,0,0,0.0514809785306935,0,0,0,0,-0.0531710420276173,-0.0873006291884384,0,0,0,-0.0752437400617192,0.154729184070146,0,0,0,0,0.0880961307806634,0.173689116070487,0,0,0,0,0,0,0,0,0,0,0,0.0289891188018387,0,0,0,0,0,-0.0448926153917674,0.102961957061387,0,0,0.124823715444844,0.249729730887399,0,0,0,0,0,0 | ||
|repeat_enrich_byname=0,0.18613148201837,0,0,0.0880961307806634,0,0,0.102961957061387,0,0,0,0,0,0,0,0,-0.247178875285564,0,-0.287954736733639,-0.143515142523472,0,0,0.379718128299187,0,0.102961957061387,0,0,0.415848565824586,0,0.595821171740019,0.368789546046903,0,-0.128119866952565,0,-0.0504125515893149,0,0.368789546046903,0.102961957061387,0,0.0514809785306935,0.259833358587629,0,-0.17425806114951,-0.0683442610773682,0,0,0,0,-0.0492225364463411,0,-0.0179175267323533,0.103411313694952,0,-0.568801608648853,0.577527974850384,0,0,0,-0.446621573609204,-0.9154169563315,0,0,0.385982362449785,-0.088283877551474,0,0,-0.391044581551635,0,-0.64546729986013,-0.226001370666235,0,-0.0196528814885974,0,0,0.255904783757597,0,0.093065741009185,0,0,0,0,0,0,-0.0574934668214365,0.205494098091226,-0.0304099808375785,0,0,-0.00099756165277537,0.422587510388678,0,0,-0.373286155956567,-0.247774056235471,0.024795416219594,-0.73806369862843,0,-0.302389727009913,-0.288115132940239,-0.30407827274047,-0.0752437400617192,0.108502934386458,-0.00385023753147754,0,0.00848089992991385,-0.0861651851387734,-0.018418772524118,-0.213682128998713,-0.0286287989969872,-1.2314085082871,-0.0709622016909124,0,0,-0.0526072247243635,0.857419880256848,0,0,-0.17411010676933,-0.169492346461606,-0.67098743647571,-0.555957447383153,-0.458162476298044,-0.0192310259619841,-0.0395325284566706,0.193650620065945,-0.0371995701880773,-0.4215723249037,-0.147634710946034,0,-0.087969206950705,-0.254203468484739,-0.469907499399879,0.580481180082928,-0.0633643924618333,-0.483977461810981,-0.0683442610773682,0,-0.878622304618833,-0.102234967869164,0,-0.0320242194165276,-0.392645748853042,0,0,0.0652175289989818,0,0,-0.0632322546229767,0.508426928929409,0.587894653710674,0,0.11142963880363,-0.0115035519457614,0.33814291028158,0,0.224301804336686,-0.0160392795924357,-0.142608800090442,-0.253792972985732,0,-0.279865136727376,-0.280813303123527,-0.0620287392776155,-0.106390197684294,-0.0584468268118252,0.0723576348992495,0.369683527009711,-0.0845773518937496,0.690519554653703,-0.0155549600245879,-0.0881268324752877,0,0.0969724897160957,-0.114192542135488,-0.132029103037114,0.00323983526663901,0,0.409022940049795,0,0.306770348277387,0,0.384619231275413,0.1106533214893,1.19691208221846,-0.0811262278624532,0,0.123602040064817,-0.788130937773974,0,-0.135723143846782,-0.0487278256844071,0.18613148201837,-0.150367083334639,-0.697695966512583,0.258518192860514,-0.138989456679195,0,-0.790080158389657,0,0,-0.232494340770188,0.180372528060198,0,-0.00921383972228035,0.155401687961426,0.26624521257984,0.139933710322663,0,0,-0.645700337992725,0,0.102961957061387,-0.60592806381803,0,-0.0873006291884384,-0.253326341486756,-0.0992333612982205,-0.108622809454255,0,0,0.191261780081727,1.2179408455595,-0.126374602798753,0,0,-0.19840031806813,-0.116628112990133,0,0.490258620117238,0,0,0,0.0124699362365788,0.102961957061387,0,0.043965841050171,0,0,0.441270626166557,-0.0388287225090049,0,-0.0665126808754428,0,0,0,0,0,0,0,0.102961957061387,-0.649891980155044,0.052486398723664,-0.12301741567642,0,0.0514809785306935,0,0,-0.215723402553475,-0.203236562094724,0,0.124042077259965,0,0,0,0,-0.0861409897892114,0,0,0,0.0514809785306935,0.0452315000077233,0.246613575621957,0,0.102961957061387,0,0.347378232140974,0,0,0,0,0.301492851647985,0,0,-0.315925565678937,0,-0.141690124240567,0.0213800775145459,0,0.149192046981821,0.140379484532716,-1.12348885863009,0,0,-0.261347131789888,0,0,0.181996523926254,0.173534560791931,0,0,0,0,0,0,0.12847502136469,0,0.823072564129354,0,0,0,0,0,0,0,0,0,0,0,-0.145570482386513,0.0939074253598594,0,0,0,0,0,0,0,-0.0241060230789031,-0.115539826297054,0.0514809785306935,0,0,0,0,0.18613148201837,0,0,-0.368463982601855,0,0,0.368789546046903,0,0,-0.0969923612426051,0,0,0,0,0.289707759759569,0,0,0.219612689107514,0,0,0,0,0,0,0,0,0,0,0,0,0,0.501013547707316,0.138738101998853,0,0,0,0,0,0.415848565824586,0,0.141015267618496,0,0.255904783757597,0,0,2.26954811549893,0,0,0,-0.104796384789156,0,-0.0573560730249988,0,0,0.102961957061387,0,0,0,0.127952391878799,0.093065741009185,0,0,0.316004607707443,0,0,0,0,0,0,0.127952391878799,0,0,0,-0.495810058438163,-0.0247755787802223,-0.120988871548185,0.0461030108987881,0,0,-0.232628352633041,0,0,0,0,0,0,0.061725316980658,0,0,0,0,0,0,0,0,0.338144264845977,0,0,0,0,0,0,0,0,0.102961957061387,0.102961957061387,0,0,0,0,0,0,0.09309434807371,0,0,0,0,0,0,0,0.157946887489539,0,0,0.901585254569523,0,0,0,0,0,0,-0.287976840656709,-0.283220399823148,-0.183542901633549,0,0,0,-0.054385572482455,0,0,-0.0820564584332857,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0.255904783757597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0328084716699422,0,0,0,0,0.496974821301028,0,0,0,0,0,0,0,0,0,0,0,0,0,0.742122472970388,0.0514809785306935,0,0,0,0,0,0,0,0,0.102961957061387,0,0,0,0,0,0,0.201864388278729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.175886315488958,0,0,0,-0.0269547476386739,0,0,0,0,0,0,0.102961957061387,0,0.18613148201837,0,0,0,0,0,0,0,0,0,0,0,0.18613148201837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102961957061387,0,0.294678577024844,0,0,0,0,0,0,0,0,0,0,0.0320898459691778,0,0,0.207682708518543,0,0.231627975477416,0,0,0,0,0,0,0,0,0,0,0,0.255904783757597,0,0,0,0,0.149603401459526,0,0,0,0,0.138494371357451,0,0,0,0,0,0,0,-0.0359475192711595,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00229417546909177,0,0,-0.0170384548014767,0,0,0.0601888174825062,0,0,0.0514809785306935,0,0,0,0,0,0,0.307469366896776,0,0,0,0,0,0,0,0,0,0,0.320359503821234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102961957061387,0,0,0,0,1.28914991353992,0,0,0,0,0,0,0,0.11232506801101,0.249729730887399,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32554353648127,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271156728861237,0,0,0,0,0,0,0,0,0,0,0.102961957061387,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0514809785306935,0,0,0.063368818636509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266241347385098,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127952391878799,0,0,0,0,0,0,0,0,0.503679759460287,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102961957061387,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316004607707443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255904783757597,0,0,0,0,0,-0.0897852307835347,0,0.0514809785306935,0,0,0,0,0.102961957061387,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0514809785306935,0,0,0,0,0,0,0.102961957061387,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.157236414286507,0,0,0,0,0,0,0,-0.0197340399356136,0,0,0,0,0.0514809785306935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0237397835175619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0613491549608015,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209483282384415,0,0.0514809785306935,0,0,0,0.236262609042465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102961957061387,0,0,0.00561832984829033,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102961957061387,0,0,0,0,0,0.183048017928581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0514809785306935,0,0,0,0,0,0,0,0,0,0,0,0.0514809785306935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108064321332135,0.229151622461588,0,0,0,0,0,0,0,0,0,0.308803630459812,0,0,0,0,0.102961957061387,0,0,0,0,0,0,0,0,0,0,0.0514809785306935,0,0,0.173031165261779,0,0.610076902741391,0.93822977175736,0,0.183134362191927,0.102961957061387,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102961957061387,0,-0.0858575238932008,0,0,0,0.0703240645008643,0,0,0.316004607707443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0514809785306935,0.252410599447229,0,0.00114498328638895,0.13540800624818,0,0.102961957061387,0.060751516774872,0,0,0.102961957061387,0,0,0.0809118886672978,0.259273910943185,0,0.102961957061387,0,0,0,0,0.0514809785306935,0,0,0,0,0,0,0,0,0,0,0,-0.0568589461625992,0.430631808380669,0,-0.378836254350424,0,0,-0.126685149296477,0,0,0,-0.0959594073735869 | |repeat_enrich_byname=0,0.18613148201837,0,0,0.0880961307806634,0,0,0.102961957061387,0,0,0,0,0,0,0,0,-0.247178875285564,0,-0.287954736733639,-0.143515142523472,0,0,0.379718128299187,0,0.102961957061387,0,0,0.415848565824586,0,0.595821171740019,0.368789546046903,0,-0.128119866952565,0,-0.0504125515893149,0,0.368789546046903,0.102961957061387,0,0.0514809785306935,0.259833358587629,0,-0.17425806114951,-0.0683442610773682,0,0,0,0,-0.0492225364463411,0,-0.0179175267323533,0.103411313694952,0,-0.568801608648853,0.577527974850384,0,0,0,-0.446621573609204,-0.9154169563315,0,0,0.385982362449785,-0.088283877551474,0,0,-0.391044581551635,0,-0.64546729986013,-0.226001370666235,0,-0.0196528814885974,0,0,0.255904783757597,0,0.093065741009185,0,0,0,0,0,0,-0.0574934668214365,0.205494098091226,-0.0304099808375785,0,0,-0.00099756165277537,0.422587510388678,0,0,-0.373286155956567,-0.247774056235471,0.024795416219594,-0.73806369862843,0,-0.302389727009913,-0.288115132940239,-0.30407827274047,-0.0752437400617192,0.108502934386458,-0.00385023753147754,0,0.00848089992991385,-0.0861651851387734,-0.018418772524118,-0.213682128998713,-0.0286287989969872,-1.2314085082871,-0.0709622016909124,0,0,-0.0526072247243635,0.857419880256848,0,0,-0.17411010676933,-0.169492346461606,-0.67098743647571,-0.555957447383153,-0.458162476298044,-0.0192310259619841,-0.0395325284566706,0.193650620065945,-0.0371995701880773,-0.4215723249037,-0.147634710946034,0,-0.087969206950705,-0.254203468484739,-0.469907499399879,0.580481180082928,-0.0633643924618333,-0.483977461810981,-0.0683442610773682,0,-0.878622304618833,-0.102234967869164,0,-0.0320242194165276,-0.392645748853042,0,0,0.0652175289989818,0,0,-0.0632322546229767,0.508426928929409,0.587894653710674,0,0.11142963880363,-0.0115035519457614,0.33814291028158,0,0.224301804336686,-0.0160392795924357,-0.142608800090442,-0.253792972985732,0,-0.279865136727376,-0.280813303123527,-0.0620287392776155,-0.106390197684294,-0.0584468268118252,0.0723576348992495,0.369683527009711,-0.0845773518937496,0.690519554653703,-0.0155549600245879,-0.0881268324752877,0,0.0969724897160957,-0.114192542135488,-0.132029103037114,0.00323983526663901,0,0.409022940049795,0,0.306770348277387,0,0.384619231275413,0.1106533214893,1.19691208221846,-0.0811262278624532,0,0.123602040064817,-0.788130937773974,0,-0.135723143846782,-0.0487278256844071,0.18613148201837,-0.150367083334639,-0.697695966512583,0.258518192860514,-0.138989456679195,0,-0.790080158389657,0,0,-0.232494340770188,0.180372528060198,0,-0.00921383972228035,0.155401687961426,0.26624521257984,0.139933710322663,0,0,-0.645700337992725,0,0.102961957061387,-0.60592806381803,0,-0.0873006291884384,-0.253326341486756,-0.0992333612982205,-0.108622809454255,0,0,0.191261780081727,1.2179408455595,-0.126374602798753,0,0,-0.19840031806813,-0.116628112990133,0,0.490258620117238,0,0,0,0.0124699362365788,0.102961957061387,0,0.043965841050171,0,0,0.441270626166557,-0.0388287225090049,0,-0.0665126808754428,0,0,0,0,0,0,0,0.102961957061387,-0.649891980155044,0.052486398723664,-0.12301741567642,0,0.0514809785306935,0,0,-0.215723402553475,-0.203236562094724,0,0.124042077259965,0,0,0,0,-0.0861409897892114,0,0,0,0.0514809785306935,0.0452315000077233,0.246613575621957,0,0.102961957061387,0,0.347378232140974,0,0,0,0,0.301492851647985,0,0,-0.315925565678937,0,-0.141690124240567,0.0213800775145459,0,0.149192046981821,0.140379484532716,-1.12348885863009,0,0,-0.261347131789888,0,0,0.181996523926254,0.173534560791931,0,0,0,0,0,0,0.12847502136469,0,0.823072564129354,0,0,0,0,0,0,0,0,0,0,0,-0.145570482386513,0.0939074253598594,0,0,0,0,0,0,0,-0.0241060230789031,-0.115539826297054,0.0514809785306935,0,0,0,0,0.18613148201837,0,0,-0.368463982601855,0,0,0.368789546046903,0,0,-0.0969923612426051,0,0,0,0,0.289707759759569,0,0,0.219612689107514,0,0,0,0,0,0,0,0,0,0,0,0,0,0.501013547707316,0.138738101998853,0,0,0,0,0,0.415848565824586,0,0.141015267618496,0,0.255904783757597,0,0,2.26954811549893,0,0,0,-0.104796384789156,0,-0.0573560730249988,0,0,0.102961957061387,0,0,0,0.127952391878799,0.093065741009185,0,0,0.316004607707443,0,0,0,0,0,0,0.127952391878799,0,0,0,-0.495810058438163,-0.0247755787802223,-0.120988871548185,0.0461030108987881,0,0,-0.232628352633041,0,0,0,0,0,0,0.061725316980658,0,0,0,0,0,0,0,0,0.338144264845977,0,0,0,0,0,0,0,0,0.102961957061387,0.102961957061387,0,0,0,0,0,0,0.09309434807371,0,0,0,0,0,0,0,0.157946887489539,0,0,0.901585254569523,0,0,0,0,0,0,-0.287976840656709,-0.283220399823148,-0.183542901633549,0,0,0,-0.054385572482455,0,0,-0.0820564584332857,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0.255904783757597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0328084716699422,0,0,0,0,0.496974821301028,0,0,0,0,0,0,0,0,0,0,0,0,0,0.742122472970388,0.0514809785306935,0,0,0,0,0,0,0,0,0.102961957061387,0,0,0,0,0,0,0.201864388278729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.175886315488958,0,0,0,-0.0269547476386739,0,0,0,0,0,0,0.102961957061387,0,0.18613148201837,0,0,0,0,0,0,0,0,0,0,0,0.18613148201837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102961957061387,0,0.294678577024844,0,0,0,0,0,0,0,0,0,0,0.0320898459691778,0,0,0.207682708518543,0,0.231627975477416,0,0,0,0,0,0,0,0,0,0,0,0.255904783757597,0,0,0,0,0.149603401459526,0,0,0,0,0.138494371357451,0,0,0,0,0,0,0,-0.0359475192711595,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00229417546909177,0,0,-0.0170384548014767,0,0,0.0601888174825062,0,0,0.0514809785306935,0,0,0,0,0,0,0.307469366896776,0,0,0,0,0,0,0,0,0,0,0.320359503821234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102961957061387,0,0,0,0,1.28914991353992,0,0,0,0,0,0,0,0.11232506801101,0.249729730887399,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32554353648127,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271156728861237,0,0,0,0,0,0,0,0,0,0,0.102961957061387,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0514809785306935,0,0,0.063368818636509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266241347385098,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127952391878799,0,0,0,0,0,0,0,0,0.503679759460287,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102961957061387,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316004607707443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255904783757597,0,0,0,0,0,-0.0897852307835347,0,0.0514809785306935,0,0,0,0,0.102961957061387,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0514809785306935,0,0,0,0,0,0,0.102961957061387,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.157236414286507,0,0,0,0,0,0,0,-0.0197340399356136,0,0,0,0,0.0514809785306935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0237397835175619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0613491549608015,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209483282384415,0,0.0514809785306935,0,0,0,0.236262609042465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102961957061387,0,0,0.00561832984829033,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102961957061387,0,0,0,0,0,0.183048017928581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0514809785306935,0,0,0,0,0,0,0,0,0,0,0,0.0514809785306935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108064321332135,0.229151622461588,0,0,0,0,0,0,0,0,0,0.308803630459812,0,0,0,0,0.102961957061387,0,0,0,0,0,0,0,0,0,0,0.0514809785306935,0,0,0.173031165261779,0,0.610076902741391,0.93822977175736,0,0.183134362191927,0.102961957061387,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102961957061387,0,-0.0858575238932008,0,0,0,0.0703240645008643,0,0,0.316004607707443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0514809785306935,0.252410599447229,0,0.00114498328638895,0.13540800624818,0,0.102961957061387,0.060751516774872,0,0,0.102961957061387,0,0,0.0809118886672978,0.259273910943185,0,0.102961957061387,0,0,0,0,0.0514809785306935,0,0,0,0,0,0,0,0,0,0,0,-0.0568589461625992,0.430631808380669,0,-0.378836254350424,0,0,-0.126685149296477,0,0,0,-0.0959594073735869 | ||
Line 91: | Line 100: | ||
|top_motifs=FOX{D1,D2}:2.93005688477;PAX3,7:2.92016393468;CREB1:2.69351842472;CDX1,2,4:2.5232822633;BPTF:2.43220276335;RUNX1..3:2.31411520212;ELF1,2,4:2.23323208591;PDX1:2.20101749793;FOXO1,3,4:2.05190339211;RFX2..5_RFXANK_RFXAP:1.87451143445;ATF5_CREB3:1.72666350361;DMAP1_NCOR{1,2}_SMARC:1.7103464691;ETS1,2:1.6894328694;ZBTB16:1.62366683761;ATF4:1.52352719418;ELK1,4_GABP{A,B1}:1.51541619938;FOX{F1,F2,J1}:1.46469356749;PBX1:1.45694148141;TLX2:1.44240227443;FOXN1:1.43957077285;PAX6:1.40062401815;HMX1:1.36909432893;NKX6-1,2:1.31462835487;RFX1:1.28963932912;LEF1_TCF7_TCF7L1,2:1.22656809582;BREu{core}:1.18056985685;PAX4:1.17007577589;FOX{I1,J2}:1.16714691222;TGIF1:1.14928775643;IKZF2:1.12948426809;T:1.06578309993;RORA:1.03741659064;PITX1..3:1.02002067862;IRF1,2:0.979443796054;ATF2:0.963621359147;HIF1A:0.939590026384;SPI1:0.936491365493;FOXP1:0.889447091645;GATA6:0.877146613259;NKX2-1,4:0.832305829431;ZEB1:0.814529737442;SPIB:0.805751597996;AHR_ARNT_ARNT2:0.798921455358;PAX2:0.785117223317;STAT1,3:0.717060467434;SPZ1:0.669537226381;SOX2:0.668475057144;JUN:0.634286186835;YY1:0.633983482302;SOX5:0.61647100339;HBP1_HMGB_SSRP1_UBTF:0.584676449299;NFIX:0.495703043176;CUX2:0.40848820673;NRF1:0.393592801036;IRF7:0.360866364339;SNAI1..3:0.358910660914;ATF6:0.347018198135;STAT5{A,B}:0.320408720821;HOX{A6,A7,B6,B7}:0.214508931499;ALX1:0.19780755143;FOXQ1:0.172975387673;LMO2:0.162131019034;POU1F1:0.155291885316;NKX3-1:0.154924218639;CRX:0.128109406626;NANOG:0.119190437282;NKX2-2,8:0.105120280167;SREBF1,2:0.0751164301254;NFIL3:0.0208621517317;NANOG{mouse}:0.00481240226462;NR5A1,2:0.000332032836471;FOXA2:-0.0236776298714;NFKB1_REL_RELA:-0.0433275716769;TAL1_TCF{3,4,12}:-0.0439716642694;OCT4_SOX2{dimer}:-0.045912028422;MAFB:-0.060596543082;ZNF143:-0.0696951942102;FOXD3:-0.104203051777;POU2F1..3:-0.123459122797;VSX1,2:-0.15684378263;MYB:-0.160922216848;HOXA9_MEIS1:-0.192588775165;NFATC1..3:-0.195032406492;NFE2L1:-0.19688818225;AIRE:-0.211314945546;HES1:-0.223924231005;EVI1:-0.226454825494;RBPJ:-0.237210395583;EP300:-0.23743065682;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.247059463247;MYOD1:-0.247447960702;POU3F1..4:-0.252626685675;EGR1..3:-0.299980665796;NFY{A,B,C}:-0.326172835198;HNF1A:-0.331730742934;PRRX1,2:-0.35622285164;AR:-0.359785473946;TOPORS:-0.384760938598;E2F1..5:-0.390889144058;DBP:-0.44669932238;HNF4A_NR2F1,2:-0.479833861598;MYFfamily:-0.485758203194;ADNP_IRX_SIX_ZHX:-0.491980616639;HAND1,2:-0.520430492921;NHLH1,2:-0.523697300141;PAX5:-0.530073900283;TBX4,5:-0.564205988693;FOSL2:-0.592644923482;GLI1..3:-0.607548299632;SMAD1..7,9:-0.618758320788;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.620257951018;STAT2,4,6:-0.63293325455;MEF2{A,B,C,D}:-0.661411903768;HLF:-0.680080224187;RREB1:-0.692938421083;CEBPA,B_DDIT3:-0.701677073576;ARID5B:-0.70236307866;HMGA1,2:-0.70369721461;PAX8:-0.721357941495;GFI1:-0.733780292954;SOX{8,9,10}:-0.797173444169;GFI1B:-0.800943671578;SOX17:-0.802541979293;BACH2:-0.81128557543;FOS_FOS{B,L1}_JUN{B,D}:-0.817367971341;NR6A1:-0.823987291285;MZF1:-0.844335751778;MED-1{core}:-0.857996687427;ZFP161:-0.869932218219;PPARG:-0.944436204403;MYBL2:-0.961464472357;FOXP3:-0.975655553556;ALX4:-0.977587653042;GCM1,2:-0.986551566575;FOXM1:-0.989429009513;XBP1:-0.994936076933;MTE{core}:-1.00500041061;REST:-1.02587286585;ZNF148:-1.03044424942;NFE2:-1.04941565319;MTF1:-1.0512290803;ZNF238:-1.06087381708;bHLH_family:-1.07500398945;PRDM1:-1.09185974455;ZNF384:-1.10623822557;ZBTB6:-1.11991416357;LHX3,4:-1.15651090625;FOXL1:-1.19786963642;POU6F1:-1.19922844422;SRF:-1.24061226836;UFEwm:-1.24360673292;TP53:-1.25808846203;PATZ1:-1.28404147063;GATA4:-1.30107185301;EBF1:-1.32144269819;NKX2-3_NKX2-5:-1.34028846867;NR3C1:-1.3702676998;MAZ:-1.37040302205;RXRA_VDR{dimer}:-1.37921587081;ZNF423:-1.39949257197;HOX{A5,B5}:-1.41513014979;TEF:-1.43558693329;RXR{A,B,G}:-1.46423239446;NFE2L2:-1.4847002929;NKX3-2:-1.52342357414;TFAP4:-1.52700088051;POU5F1:-1.55639313108;GZF1:-1.55820297352;KLF4:-1.57539892594;GTF2I:-1.58431052319;GTF2A1,2:-1.59340640091;HIC1:-1.60517181087;ONECUT1,2:-1.60736489426;EN1,2:-1.62324825975;XCPE1{core}:-1.62435236951;CDC5L:-1.62831640872;HOX{A4,D4}:-1.64748392722;TLX1..3_NFIC{dimer}:-1.65510596907;TEAD1:-1.66585816441;SP1:-1.72047437232;TFCP2:-1.74062642933;NR1H4:-1.76521008971;TFDP1:-1.79681872617;TFAP2B:-1.80389402151;ESR1:-1.80920256331;ZIC1..3:-1.90275139874;TFAP2{A,C}:-1.94995601265;PAX1,9:-2.07298515544;ESRRA:-2.11534147052;TBP:-2.19430180858;HSF1,2:-2.38434276843;IKZF1:-2.7250353178 | |top_motifs=FOX{D1,D2}:2.93005688477;PAX3,7:2.92016393468;CREB1:2.69351842472;CDX1,2,4:2.5232822633;BPTF:2.43220276335;RUNX1..3:2.31411520212;ELF1,2,4:2.23323208591;PDX1:2.20101749793;FOXO1,3,4:2.05190339211;RFX2..5_RFXANK_RFXAP:1.87451143445;ATF5_CREB3:1.72666350361;DMAP1_NCOR{1,2}_SMARC:1.7103464691;ETS1,2:1.6894328694;ZBTB16:1.62366683761;ATF4:1.52352719418;ELK1,4_GABP{A,B1}:1.51541619938;FOX{F1,F2,J1}:1.46469356749;PBX1:1.45694148141;TLX2:1.44240227443;FOXN1:1.43957077285;PAX6:1.40062401815;HMX1:1.36909432893;NKX6-1,2:1.31462835487;RFX1:1.28963932912;LEF1_TCF7_TCF7L1,2:1.22656809582;BREu{core}:1.18056985685;PAX4:1.17007577589;FOX{I1,J2}:1.16714691222;TGIF1:1.14928775643;IKZF2:1.12948426809;T:1.06578309993;RORA:1.03741659064;PITX1..3:1.02002067862;IRF1,2:0.979443796054;ATF2:0.963621359147;HIF1A:0.939590026384;SPI1:0.936491365493;FOXP1:0.889447091645;GATA6:0.877146613259;NKX2-1,4:0.832305829431;ZEB1:0.814529737442;SPIB:0.805751597996;AHR_ARNT_ARNT2:0.798921455358;PAX2:0.785117223317;STAT1,3:0.717060467434;SPZ1:0.669537226381;SOX2:0.668475057144;JUN:0.634286186835;YY1:0.633983482302;SOX5:0.61647100339;HBP1_HMGB_SSRP1_UBTF:0.584676449299;NFIX:0.495703043176;CUX2:0.40848820673;NRF1:0.393592801036;IRF7:0.360866364339;SNAI1..3:0.358910660914;ATF6:0.347018198135;STAT5{A,B}:0.320408720821;HOX{A6,A7,B6,B7}:0.214508931499;ALX1:0.19780755143;FOXQ1:0.172975387673;LMO2:0.162131019034;POU1F1:0.155291885316;NKX3-1:0.154924218639;CRX:0.128109406626;NANOG:0.119190437282;NKX2-2,8:0.105120280167;SREBF1,2:0.0751164301254;NFIL3:0.0208621517317;NANOG{mouse}:0.00481240226462;NR5A1,2:0.000332032836471;FOXA2:-0.0236776298714;NFKB1_REL_RELA:-0.0433275716769;TAL1_TCF{3,4,12}:-0.0439716642694;OCT4_SOX2{dimer}:-0.045912028422;MAFB:-0.060596543082;ZNF143:-0.0696951942102;FOXD3:-0.104203051777;POU2F1..3:-0.123459122797;VSX1,2:-0.15684378263;MYB:-0.160922216848;HOXA9_MEIS1:-0.192588775165;NFATC1..3:-0.195032406492;NFE2L1:-0.19688818225;AIRE:-0.211314945546;HES1:-0.223924231005;EVI1:-0.226454825494;RBPJ:-0.237210395583;EP300:-0.23743065682;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.247059463247;MYOD1:-0.247447960702;POU3F1..4:-0.252626685675;EGR1..3:-0.299980665796;NFY{A,B,C}:-0.326172835198;HNF1A:-0.331730742934;PRRX1,2:-0.35622285164;AR:-0.359785473946;TOPORS:-0.384760938598;E2F1..5:-0.390889144058;DBP:-0.44669932238;HNF4A_NR2F1,2:-0.479833861598;MYFfamily:-0.485758203194;ADNP_IRX_SIX_ZHX:-0.491980616639;HAND1,2:-0.520430492921;NHLH1,2:-0.523697300141;PAX5:-0.530073900283;TBX4,5:-0.564205988693;FOSL2:-0.592644923482;GLI1..3:-0.607548299632;SMAD1..7,9:-0.618758320788;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.620257951018;STAT2,4,6:-0.63293325455;MEF2{A,B,C,D}:-0.661411903768;HLF:-0.680080224187;RREB1:-0.692938421083;CEBPA,B_DDIT3:-0.701677073576;ARID5B:-0.70236307866;HMGA1,2:-0.70369721461;PAX8:-0.721357941495;GFI1:-0.733780292954;SOX{8,9,10}:-0.797173444169;GFI1B:-0.800943671578;SOX17:-0.802541979293;BACH2:-0.81128557543;FOS_FOS{B,L1}_JUN{B,D}:-0.817367971341;NR6A1:-0.823987291285;MZF1:-0.844335751778;MED-1{core}:-0.857996687427;ZFP161:-0.869932218219;PPARG:-0.944436204403;MYBL2:-0.961464472357;FOXP3:-0.975655553556;ALX4:-0.977587653042;GCM1,2:-0.986551566575;FOXM1:-0.989429009513;XBP1:-0.994936076933;MTE{core}:-1.00500041061;REST:-1.02587286585;ZNF148:-1.03044424942;NFE2:-1.04941565319;MTF1:-1.0512290803;ZNF238:-1.06087381708;bHLH_family:-1.07500398945;PRDM1:-1.09185974455;ZNF384:-1.10623822557;ZBTB6:-1.11991416357;LHX3,4:-1.15651090625;FOXL1:-1.19786963642;POU6F1:-1.19922844422;SRF:-1.24061226836;UFEwm:-1.24360673292;TP53:-1.25808846203;PATZ1:-1.28404147063;GATA4:-1.30107185301;EBF1:-1.32144269819;NKX2-3_NKX2-5:-1.34028846867;NR3C1:-1.3702676998;MAZ:-1.37040302205;RXRA_VDR{dimer}:-1.37921587081;ZNF423:-1.39949257197;HOX{A5,B5}:-1.41513014979;TEF:-1.43558693329;RXR{A,B,G}:-1.46423239446;NFE2L2:-1.4847002929;NKX3-2:-1.52342357414;TFAP4:-1.52700088051;POU5F1:-1.55639313108;GZF1:-1.55820297352;KLF4:-1.57539892594;GTF2I:-1.58431052319;GTF2A1,2:-1.59340640091;HIC1:-1.60517181087;ONECUT1,2:-1.60736489426;EN1,2:-1.62324825975;XCPE1{core}:-1.62435236951;CDC5L:-1.62831640872;HOX{A4,D4}:-1.64748392722;TLX1..3_NFIC{dimer}:-1.65510596907;TEAD1:-1.66585816441;SP1:-1.72047437232;TFCP2:-1.74062642933;NR1H4:-1.76521008971;TFDP1:-1.79681872617;TFAP2B:-1.80389402151;ESR1:-1.80920256331;ZIC1..3:-1.90275139874;TFAP2{A,C}:-1.94995601265;PAX1,9:-2.07298515544;ESRRA:-2.11534147052;TBP:-2.19430180858;HSF1,2:-2.38434276843;IKZF1:-2.7250353178 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11795-124C4;search_select_hide=table117:FF:11795-124C4 | |||
}} | }} |
Latest revision as of 18:20, 4 June 2020
Name: | CD4+CD25-CD45RA+ naive conventional T cells, donor2 |
---|---|
Species: | Human (Homo sapiens) |
Library ID: | CNhs13205 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
ExpandAdditional information |
---|
ExpandCAGE Accession numbers |
---|
ExpandDownload raw sequence, BAM & CTSS |
---|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13205
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13205
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13205
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000210 human sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA