FF:11845-124H9: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00004773 | |||
|accession_numbers=CAGE;DRX008765;DRR009637;DRZ001062;DRZ002447;DRZ012412;DRZ013797 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000473,CL:0000255,CL:0000627,CL:0000682 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000473,CL:0000255,CL:0000627,CL:0000682 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr10:80555320..80555378,-!p1@Creb3l3!2.84!792.44!Creb3l3;;chr7:51787434..51787448,-!p1@Spib!2.65!623.04!Spib;;chr3:3634145..3634161,+!p1@Hnf4g!2.46!288.84!Hnf4g;;chr2:163372884..163372904,+!p1@Hnf4a!2.34!215.91!Hnf4a;;chr6:86619104..86619119,-!p1@Mxd1!2.30!1497.60!Mxd1;;chr5:148118639..148118715,-!p1@Cdx2!2.05!110.25!Cdx2;;chr16:38294860..38294924,-!p1@Nr1i2!1.83!67.19!Nr1i2;;chr1:193007123..193007139,-!p1@Atf3!1.82!346.26!Atf3;;chr1:137155026..137155042,-!p1@Elf3!1.81!350.86!Elf3;;chr10:88969376..88969395,-!p1@Nr1h4!1.81!63.17!Nr1h4;;chr2:163332558..163332596,+!p2@Hnf4a!1.73!52.26!Hnf4a;;chr2:180069370..180069409,-!p1@Gata5!1.70!57.42!Gata5;;chr18:61195865..61195880,-!p1@Cdx1!1.70!48.81!Cdx1;;chr12:86814833..86814846,+!p1@Fos!1.69!1038.21!Fos;;chr18:61195843..61195864,-!p2@Cdx1!1.67!45.36!Cdx1;;chr14:63864056..63864102,-!p1@Gata4!1.65!74.65!Gata4;;chr4:122673187..122673201,+!p2@Mycl1!1.61!68.91!Mycl1;;chr8:77396591..77396639,+!p1@Isx!1.56!35.60!Isx;;chr4:124805061..124805087,-!p1@Zc3h12a!1.55!102.79!Zc3h12a;;chr6:39068163..39068176,-!p2@Parp12!1.54!61.44!Parp12;;chr10:80555398..80555409,-!p2@Creb3l3!1.52!32.16!Creb3l3;;chr2:133377954..133377973,+!p1@Bmp2!1.51!96.47!Bmp2;;chr5:120121169..120121171,+!p4@Tbx3!1.50!53.40!Tbx3;;chr5:115421065..115421088,-!p1@Hnf1a!1.50!30.43!Hnf1a;;chr17:25707623..25707639,-!p1@Sox8!1.45!112.55!Sox8;;chr1:173144100..173144138,+!p2@Nr1i3!1.45!26.99!Nr1i3;;chr3:3508024..3508069,+!p2@Hnf4g!1.44!26.41!Hnf4g;;chr19:5560600..5560617,-!p1@Ovol1!1.43!31.58!Ovol1;;chr8:87502608..87502623,-!p1@Junb!1.41!381.29!Junb;;chr1:194979315..194979359,+!p1@Irf6!1.40!141.84!Irf6;;chr11:53583544..53583559,+!p1@Irf1!1.37!357.75!Irf1;;chr5:135582751..135582788,+!p1@Mlxipl!1.36!84.99!Mlxipl;;chr19:6996243..6996293,-!p1@Esrra!1.34!222.23!Esrra;;chr15:97738692..97738747,-!p1@Vdr!1.33!108.53!Vdr;;chr1:39250584..39250643,+!p1@Npas2!1.32!97.05!Npas2;;chr8:77397190..77397202,+!p5@Isx!1.32!20.10!Isx;;chr7:20213752..20213778,-!p2@Relb!1.32!20.10!Relb;;chr18:64499674..64499696,+!p1@Onecut2!1.31!33.31!Onecut2;;chr5:148118840..148118857,-!p2@Cdx2!1.29!18.38!Cdx2;;chr14:99697871..99697934,+!p1@Klf5!1.28!343.96!Klf5;;chr12:56593574..56593592,-!p1@Nfkbia!1.26!859.05!Nfkbia;;chr7:19895354..19895369,-!p1@Fosb!1.25!22.97!Fosb;;chr10:80555285..80555291,-!p4@Creb3l3!1.25!16.65!Creb3l3;;chr7:19895384..19895399,-!p2@Fosb!1.22!21.82!Fosb;;chr10:80555299..80555306,-!p3@Creb3l3!1.22!15.50!Creb3l3;;chr15:79177964..79177986,+!p1@Maff!1.21!52.26!Maff;;chr7:20214704..20214800,-!p1@Relb!1.21!49.96!Relb;;chr8:77397492..77397514,+!p3@Isx!1.20!14.93!Isx;;chr8:77397095..77397127,+!p2@Isx!1.20!14.93!Isx;;chr2:163372869..163372882,+!p3@Hnf4a!1.20!14.93!Hnf4a;;chr12:78063146..78063159,-!p2@Max!1.19!37.33!Max;;chr19:46380235..46380277,+!p3@Nfkb2!1.19!31.01!Nfkb2;;chr8:125778192..125778217,+!p2@Zfp276!1.17!39.05!Zfp276;;chr4:133109285..133109308,+!p1@Nr0b2!1.17!13.78!Nr0b2;;chr12:58646974..58647003,-!p1@Foxa1!1.15!17.80!Foxa1;;chr14:76887526..76887555,+!p10@Tsc22d1!1.15!13.21!Tsc22d1;;chr11:70500401..70500460,-!p3@Camta2!1.15!13.21!Camta2;;chr15:35225845..35225867,+!p1@Osr2!1.13!31.58!Osr2;;chr8:87643578..87643593,-!p1@Zfp791!1.13!25.84!Zfp791;;chr17:27865882..27865901,-!p1@Spdef!1.13!12.63!Spdef;;chr1:194979361..194979373,+!p2@Irf6!1.12!16.65!Irf6;;chr8:77396650..77396662,+!p4@Isx!1.12!12.06!Isx;;chr7:19608891..19608895,-!p1@Foxa3!1.11!15.50!Foxa3;;chr18:64499706..64499721,+!p2@Onecut2!1.09!16.08!Onecut2;;chr18:35020854..35020869,+!p1@Egr1!1.08!426.08!Egr1;;chr4:55545337..55545357,-!p1@Klf4!1.08!164.23!Klf4;;chr7:134519473..134519502,-!p3@Zfp747!1.08!14.93!Zfp747;;chr3:94176733..94176794,+!p1@Rorc!1.07!83.26!Rorc;;chr7:29551464..29551487,-!p2@Nfkbib!1.07!41.92!Nfkbib;;chr16:55966492..55966517,+!p2@Rpl24,p2@Zbtb11!1.07!13.78!Zbtb11;;chr19:53384910..53384937,+!p3@Mxi1!1.06!29.86!Mxi1;;chr2:173044380..173044432,-!p1@Zbp1!1.06!25.27!Zbp1;;chr7:148452314..148452329,-!p1@Irf7!1.05!72.35!Irf7;;chr2:28477452..28477483,-!p1@Gfi1b!1.05!12.63!Gfi1b;;chr6:37391910..37391928,-!p3@Creb3l2!1.05!11.48!Creb3l2;;chr9:31720843..31720888,-!p1@Barx2!1.05!11.48!Barx2;;chr19:46379199..46379301,+!p1@Nfkb2!1.04!57.42!Nfkb2;;chr6:39068181..39068206,-!p3@Parp12!1.04!20.67!Parp12;;chr2:173044357..173044377,-!p2@Zbp1!1.04!14.36!Zbp1;;chr5:148118792..148118806,-!p3@Cdx2!1.03!9.76!Cdx2;;chr5:148118614..148118625,-!p4@Cdx2!1.03!9.76!Cdx2;;chr4:148178459..148178482,+!p4@Casz1!1.03!9.76!Casz1;;chr16:55822241..55822258,-!p1@Nfkbiz!1.02!296.30!Nfkbiz;;chr7:20408047..20408125,-!p1@Bcl3!1.02!110.25!Bcl3;;chr1:120524520..120524528,+!p1@Tfcp2l1!1.01!26.99!Tfcp2l1;;chr5:140267510..140267555,+!p2@Mafk!1.01!22.40!Mafk;;chr10:44178521..44178557,-!p1@Prdm1!1.01!16.65!Prdm1;;chr7:31206743..31206761,+!p1@Nfkbid!1.01!12.63!Nfkbid;;chr6:86619130..86619158,-!p2@Mxd1!1.00!133.22!Mxd1;;chr3:135354384..135354443,-!p1@Nfkb1!1.00!55.70!Nfkb1;;chr13:5860776..5860796,+!p1@Klf6!0.98!211.89!Klf6;;chr5:140267476..140267493,+!p1@Mafk!0.96!47.09!Mafk;;chr6:64679112..64679126,+!p1@Atoh1!0.96!8.04!Atoh1;;chr2:103123925..103123959,-!p3@Ehf!0.96!8.04!Ehf;;chr19:6996294..6996324,-!p2@Esrra!0.95!53.98!Esrra;;chr8:123260252..123260264,+!p1@Irf8!0.94!56.27!Irf8;;chr18:36953486..36953503,+!p2@Zmat2!0.94!13.21!Zmat2;;chr10:44178493..44178520,-!p3@Prdm1!0.94!10.91!Prdm1;;chr7:134519511..134519534,-!p2@Zfp747!0.93!14.36!Zfp747;;chr10:44178474..44178487,-!p4@Prdm1!0.93!10.91!Prdm1;;chr10:44178375..44178390,-!p2@Prdm1!0.93!10.34!Prdm1;;chr5:148118809..148118832,-!p5@Cdx2!0.93!7.47!Cdx2;;chr19:5560570..5560582,-!p2@Ovol1!0.93!7.47!Ovol1;;chr3:128916868..128916890,+!p1@Pitx2!0.92!10.34!Pitx2;;chr11:100948597..100948637,+!p1@Mlx!0.91!177.44!Mlx;;chr1:135320989..135321043,-!p1@Sox13!0.91!82.69!Sox13;;chr8:118231678..118231692,-!p2@Maf!0.91!67.19!Maf;;chr10:80600749..80600766,+!p2@Zbtb7a!0.91!38.47!Zbtb7a;;chr4:94718861..94718872,-!p2@Jun!0.90!53.98!Jun;;chr19:55816546..55816556,+!p3@Tcf7l2!0.90!27.56!Tcf7l2;;chr3:89197057..89197114,-!p1@Zbtb7b!0.90!24.69!Zbtb7b;;chr18:11052485..11052508,+!p2@Gata6!0.90!20.10!Gata6;;chr3:87329568..87329589,+!p2@Etv3!0.90!9.76!Etv3;;chr19:53384985..53385042,+!p1@Mxi1!0.88!212.47!Mxi1;;chr13:112476433..112476448,+!p2@Mier3!0.87!12.63!Mier3;;chr9:63869890..63869908,-!p6@Smad6!0.87!8.61!Smad6;;chr11:98636508..98636524,-!p3@Nr1d1!0.87!8.04!Nr1d1;;chr4:43575544..43575565,+!p2@Creb3!0.86!38.47!Creb3;;chr1:189433521..189433548,+!p5@Esrrg!0.86!6.32!Esrrg;;chr7:29551488..29551529,-!p1@Nfkbib!0.85!205.58!Nfkbib;;chr2:152561980..152561997,+!p1@Id1!0.85!188.35!Id1;;chr5:120121020..120121049,+!p1@Tbx3!0.85!39.05!Tbx3;;chr17:45692642..45692663,+!p1@Nfkbie!0.85!20.67!Nfkbie;;chr13:30076280..30076334,-!p3@E2f3!0.85!18.95!E2f3;;chr6:39068210..39068251,-!p1@Parp12!0.84!29.29!Parp12;;chr11:98636400..98636418,-!p4@Nr1d1!0.84!8.04!Nr1d1;;chr1:135320962..135320981,-!p2@Sox13!0.83!20.67!Sox13;;chr5:32438894..32438908,+!p2@Fosl2!0.83!12.63!Fosl2;;chr9:31720903..31720918,-!p2@Barx2!0.83!5.74!Barx2;;chr7:20214018..20214024,-!p4@Relb!0.83!5.74!Relb;;chr8:73222425..73222444,+!p2@Jund!0.83!5.74!Jund;;chr1:173144144..173144176,+!p1@Nr1i3!0.83!5.74!Nr1i3;;chr8:79426176..79426275,+!p1@Nr3c2!0.82!29.86!Nr3c2;;chr5:76733981..76734018,-!p3@Clock!0.82!12.63!Clock;;chr4:94718879..94718898,-!p1@Jun!0.80!414.02!Jun;;chr4:124805092..124805135,-!p2@Zc3h12a!0.80!24.12!Zc3h12a;;chr12:85657780..85657815,+!p2@Zfp410!0.80!14.93!Zfp410;;chr7:87170879..87170914,+!p2@Zfp710!0.80!13.21!Zfp710;;chr2:91035197..91035237,-!p1@Nr1h3!0.80!11.48!Nr1h3;;chr18:11052642..11052659,+!p1@Gata6!0.79!28.14!Gata6;;chr3:89197216..89197258,-!p3@Zbtb7b!0.79!11.48!Zbtb7b;;chr17:28409136..28409150,+!p3@Ppard!0.79!5.17!Ppard;;chr2:180069640..180069660,-!p4@Gata5!0.79!5.17!Gata5;;chr1:189432634..189432643,+!p8@Esrrg!0.79!5.17!Esrrg;;chr1:194979383..194979393,+!p3@Irf6!0.79!5.17!Irf6;;chr2:166888058..166888105,-!p2@Znfx1!0.78!17.23!Znfx1;;chr5:65194752..65194769,+!p1@Klf3!0.77!179.73!Klf3;;chr15:85566051..85566080,+!p4@Ppara!0.77!5.74!Ppara;;chr2:103143336..103143367,-!p1@Ehf!0.76!8.04!Ehf;;chr5:32438831..32438878,+!p1@Fosl2!0.75!52.83!Fosl2;;chr15:25914114..25914128,+!p2@Zfp622!0.75!20.67!Zfp622;;chr14:63890519..63890539,-!p3@Gata4!0.75!4.59!Gata4;;chr2:28477422..28477433,-!p2@Gfi1b!0.75!4.59!Gfi1b;;chr2:180069410..180069421,-!p3@Gata5!0.75!4.59!Gata5;;chr1:165219345..165219366,-!p7@Prrx1!0.75!4.59!Prrx1;;chr10:126727842..126727859,+!p1@Ddit3!0.74!142.98!Ddit3;;chr19:46380172..46380231,+!p2@Nfkb2!0.74!34.45!Nfkb2;;chr17:45692676..45692695,+!p2@Nfkbie!0.74!9.76!Nfkbie;;chr3:30993616..30993634,+!p3@Skil!0.74!8.61!Skil;;chr2:91035254..91035271,-!p3@Nr1h3!0.74!5.74!Nr1h3;;chr8:118231705..118231722,-!p3@Maf!0.73!39.05!Maf;;chr18:75527009..75527027,+!p1@Smad7!0.72!99.92!Smad7;;chr17:48061381..48061399,-!p1@Foxp4!0.72!53.98!Foxp4;;chr10:80813050..80813114,-!p2@Hmg20b!0.72!51.68!Hmg20b;;chr7:20162663..20162678,+!p1@Zfp296!0.72!5.74!Zfp296;;chr1:194979301..194979310,+!p4@Irf6!0.72!5.17!Irf6;;chr10:80598209..80598236,+!p4@Zbtb7a!0.71!7.47!Zbtb7a;;chr11:53164556..53164567,+!p5@Aff4!0.71!6.89!Aff4;;chr4:148178559..148178603,+!p1@Casz1!0.70!12.63!Casz1;;chr5:148081686..148081715,+!p1@Pdx1!0.70!4.02!Pdx1;;chr2:147871627..147871641,-!p1@Foxa2!0.70!4.02!Foxa2;;chr14:63864337..63864381,-!p6@Gata4!0.70!4.02!Gata4;;chr4:135699731..135699747,+!p1@Id3!0.69!508.77!Id3;;chr2:160192793..160192809,-!p1@Mafb!0.69!66.61!Mafb;;chr4:135700687..135700719,+!p2@Id3!0.69!6.32!Id3;;chr10:107769168..107769215,+!p1@Pawr!0.68!43.64!Pawr;;chr6:140572352..140572382,+!p3@Aebp2!0.68!9.19!Aebp2;;chr15:79178060..79178074,+!p2@Maff!0.68!5.17!Maff;;chr3:87329494..87329565,+!p1@Etv3!0.67!64.31!Etv3;;chrX:7339938..7339963,+!p1@Tfe3!0.67!21.25!Tfe3;;chr18:11052606..11052633,+!p4@Gata6!0.67!10.34!Gata6;;chr11:98636531..98636559,-!p1@Nr1d1!0.66!23.54!Nr1d1;;chr4:148275237..148275311,+!p2@Casz1!0.66!16.65!Casz1;;chr18:36441119..36441158,+!p2@Pura!0.66!9.76!Pura;;chr11:96690797..96690813,-!p1@Nfe2l1!0.65!77.52!Nfe2l1;;chr14:79880971..79880992,+!p2@Elf1!0.65!51.68!Elf1;;chr8:725199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pm1!0.07!71.20!Adnp;;chr5:67698180..67698216,+!p1@Slc30a9!0.07!26.99!Slc30a9;;chr4:40216811..40216882,-!p1@Topors!0.07!19.52!Topors;;chr19:5424768..5424811,-!p2@Drap1!0.07!19.52!Drap1;;chr4:102787007..102787050,+!p1@Mier1!0.07!16.65!Mier1;;chr17:46693107..46693137,-!p1@Srf!0.07!9.76!Srf;;chr15:96117968..96118035,+!p1@Arid2!0.07!9.19!Arid2;;chr9:57684520..57684612,-!p1@Arid3b!0.07!8.61!Arid3b;;chr3:95021853..95021911,-!p1@Gabpb2!0.07!7.47!Gabpb2;;chr3:135354289..135354334,-!p3@Nfkb1!0.07!4.59!Nfkb1;;chr3:94641302..94641341,+!p3@Pogz!0.07!3.45!Pogz;;chr18:74375772..74375799,+!p2@Cxxc1!0.07!2.30!Cxxc1;;chr9:63869850..63869873,-!p2@Smad6!0.07!2.30!Smad6;;chr12:110031207..110031224,+!p5@Yy1!0.07!2.30!Yy1;;chr7:13420092..13420160,+!p2@Zfp110!0.07!1.15!Zfp110;;chr5:3647720..3647733,-!p3@Gatad1!0.07!1.15!Gatad1;;chr6:47998938..47998955,-!p2@Zfp777!0.07!0.57!Zfp777;;chr7:17200615..17200625,-!p9@Grlf1!0.07!0.57!Grlf1;;chr5:53981661..53981672,+!p5@Rbpj!0.07!0.57!Rbpj;;chr3:8667033..8667046,-!p3@Hey1!0.07!0.57!Hey1;;chr4:149610794..149610876,+!p2@LOC100045967,p2@LOC100503183,p3@Eno1,p3@Gm5506!0.07!0.57!Eno1;;chr2:17985518..17985540,+!p6@Mllt10!0.07!0.57!Mllt10;;chr16:11176344..11176353,-!p2@Zc3h7a!0.07!0.57!Zc3h7a;;chrX:148667771..148667803,+!p1@Kdm5c!0.06!56.85!Kdm5c;;chr2:72817045..72817123,-!p1@Sp3!0.06!32.73!Sp3;;chr6:140571997..140572136,+!p1@Aebp2!0.06!23.54!Aebp2;;chr10:80040030..80040072,-!p1@Klf16!0.06!20.10!Klf16;;chr16:95924005..95924042,+!p2@Ets2!0.06!17.80!Ets2;;chr5:123844791..123844835,+!p1@Mlxip!0.06!17.23!Mlxip;;chr15:102236700..102236764,+!p1@Sp1!0.06!14.93!Sp1;;chr16:98183746..98183801,-!p1@Zfp295!0.06!10.91!Zfp295;;chr10:79862223..79862261,-!p4@Mbd3!0.06!9.19!Mbd3;;chr12:100631220..100631300,-!p2@Foxn3!0.06!8.61!Foxn3;;chr8:125897750..125897758,+!p2@Tcf25!0.06!6.32!Tcf25;;chr11:98821749..98821799,+!p2@Rara!0.06!5.74!Rara;;chr8:97856080..97856150,-!p2@Zfp319!0.06!5.17!Zfp319;;chr6:37392159..37392172,-!p2@Creb3l2!0.06!4.02!Creb3l2;;chr7:148513409..148513455,-!p2@Deaf1!0.06!4.02!Deaf1;;chr16:55973950..55973977,+!p4@Rpl24,p4@Zbtb11!0.06!4.02!Zbtb11;;chr7:26053413..26053439,+!p4@Cic!0.06!3.45!Cic;;chr2:126501274..126501308,-!p2@Gabpb1!0.06!3.45!Gabpb1;;chr17:27693546..27693557,+!p6@Hmga1!0.06!2.87!Hmga1;;chr4:120624269..120624302,-!p1@Zfp69!0.06!2.87!Zfp69;;chr8:72662966..72662991,-!p3@LOC100048268,p3@Rfxank!0.06!2.87!Rfxank;;chr7:31742079..31742108,-!p4@LOC100504922,p4@Usf2!0.06!2.30!Usf2;;chr11:106993487..106993515,-!p2@Bptf!0.06!2.30!Bptf;;chr11:106134144..106134174,-!p3@Smarcd2!0.06!2.30!Smarcd2;;chr10:93610727..93610754,+!p2@Nr2c1!0.06!1.72!Nr2c1;;chr17:27693706..27693724,+!p4@Hmga1,p5@Hmga1-rs1!0.06!1.72!Hmga1;;chr16:3872286..3872315,-!p3@Zfp597!0.06!1.15!Zfp597;;chr18:3337465..3337498,-!p6@Crem!0.06!1.15!Crem;;chr13:44826634..44826645,+!p7@Jarid2!0.06!1.15!Jarid2;;chr4:149943326..149943351,+!p4@Rere!0.06!1.15!Rere;;chr4:154010228..154010244,-!p4@Prdm16!0.06!0.57!Prdm16;;chr17:87153505..87153516,+!p6@Epas1!0.06!0.57!Epas1;;chr16:30065394..30065398,+!p3@Hes1!0.06!0.57!Hes1;;chr2:126501184..126501196,-!p6@Gabpb1!0.06!0.57!Gabpb1;;chr12:75009147..75009157,+!p5@Hif1a!0.06!0.57!Hif1a;;chr7:135020660..135020688,+!p3@Zfp646!0.06!0.57!Zfp646;;chr8:118230847..118230856,-!p8@Maf!0.06!0.57!Maf;;chr8:112229401..112229419,+!p3@Zfp821!0.06!0.57!Zfp821;;chr6:124662297..124662371,+!p1@Phb2!0.05!202.13!Phb2;;chr2:160698721..160698745,-!p1@Zhx3!0.05!13.78!Zhx3;;chr7:6107541..6107572,-!p1@Zfp787!0.05!6.89!Zfp787;;chr17:33229391..33229442,+!p1@Zfp563!0.05!5.74!Zfp563;;chrX:98728074..98728116,+!p2@Taf1!0.05!5.74!Taf1;;chr18:69505414..69505465,+!p6@Tcf4!0.05!2.87!Tcf4;;chr11:98636575..98636607,-!p2@Nr1d1!0.05!2.87!Nr1d1;;chr2:164737086..164737108,-!p2@Zfp335!0.05!2.87!Zfp335;;chr9:21420610..21420621,+!p5@Smarca4!0.05!2.30!Smarca4;;chr9:63869729..63869749,-!p4@Smad6!0.05!1.15!Smad6;;chr6:47545052..47545064,-!p2@Ezh2!0.05!1.15!Ezh2;;chr6:92041506..92041517,+!p5@Nr2c2!0.05!0.57!Nr2c2;;chr2:162880306..162880319,+!p3@Mybl2!0.05!0.57!Mybl2;;chr13:59924319..59924331,-!p5@Zcchc6!0.05!0.57!Zcchc6;;chr19:9016355..9016540,+!p1@Mta2!0.04!81.54!Mta2;;chr8:72663586..72663633,+!p1@2310045N01Rik,p1@Mef2b!0.04!49.38!Mef2b;; | |expression_enrichment_score=chr10:80555320..80555378,-!p1@Creb3l3!2.84!792.44!Creb3l3;;chr7:51787434..51787448,-!p1@Spib!2.65!623.04!Spib;;chr3:3634145..3634161,+!p1@Hnf4g!2.46!288.84!Hnf4g;;chr2:163372884..163372904,+!p1@Hnf4a!2.34!215.91!Hnf4a;;chr6:86619104..86619119,-!p1@Mxd1!2.30!1497.60!Mxd1;;chr5:148118639..148118715,-!p1@Cdx2!2.05!110.25!Cdx2;;chr16:38294860..38294924,-!p1@Nr1i2!1.83!67.19!Nr1i2;;chr1:193007123..193007139,-!p1@Atf3!1.82!346.26!Atf3;;chr1:137155026..137155042,-!p1@Elf3!1.81!350.86!Elf3;;chr10:88969376..88969395,-!p1@Nr1h4!1.81!63.17!Nr1h4;;chr2:163332558..163332596,+!p2@Hnf4a!1.73!52.26!Hnf4a;;chr2:180069370..180069409,-!p1@Gata5!1.70!57.42!Gata5;;chr18:61195865..61195880,-!p1@Cdx1!1.70!48.81!Cdx1;;chr12:86814833..86814846,+!p1@Fos!1.69!1038.21!Fos;;chr18:61195843..61195864,-!p2@Cdx1!1.67!45.36!Cdx1;;chr14:63864056..63864102,-!p1@Gata4!1.65!74.65!Gata4;;chr4:122673187..122673201,+!p2@Mycl1!1.61!68.91!Mycl1;;chr8:77396591..77396639,+!p1@Isx!1.56!35.60!Isx;;chr4:124805061..124805087,-!p1@Zc3h12a!1.55!102.79!Zc3h12a;;chr6:39068163..39068176,-!p2@Parp12!1.54!61.44!Parp12;;chr10:80555398..80555409,-!p2@Creb3l3!1.52!32.16!Creb3l3;;chr2:133377954..133377973,+!p1@Bmp2!1.51!96.47!Bmp2;;chr5:120121169..120121171,+!p4@Tbx3!1.50!53.40!Tbx3;;chr5:115421065..115421088,-!p1@Hnf1a!1.50!30.43!Hnf1a;;chr17:25707623..25707639,-!p1@Sox8!1.45!112.55!Sox8;;chr1:173144100..173144138,+!p2@Nr1i3!1.45!26.99!Nr1i3;;chr3:3508024..3508069,+!p2@Hnf4g!1.44!26.41!Hnf4g;;chr19:5560600..5560617,-!p1@Ovol1!1.43!31.58!Ovol1;;chr8:87502608..87502623,-!p1@Junb!1.41!381.29!Junb;;chr1:194979315..194979359,+!p1@Irf6!1.40!141.84!Irf6;;chr11:53583544..53583559,+!p1@Irf1!1.37!357.75!Irf1;;chr5:135582751..135582788,+!p1@Mlxipl!1.36!84.99!Mlxipl;;chr19:6996243..6996293,-!p1@Esrra!1.34!222.23!Esrra;;chr15:97738692..97738747,-!p1@Vdr!1.33!108.53!Vdr;;chr1:39250584..39250643,+!p1@Npas2!1.32!97.05!Npas2;;chr8:77397190..77397202,+!p5@Isx!1.32!20.10!Isx;;chr7:20213752..20213778,-!p2@Relb!1.32!20.10!Relb;;chr18:64499674..64499696,+!p1@Onecut2!1.31!33.31!Onecut2;;chr5:148118840..148118857,-!p2@Cdx2!1.29!18.38!Cdx2;;chr14:99697871..99697934,+!p1@Klf5!1.28!343.96!Klf5;;chr12:56593574..56593592,-!p1@Nfkbia!1.26!859.05!Nfkbia;;chr7:19895354..19895369,-!p1@Fosb!1.25!22.97!Fosb;;chr10:80555285..80555291,-!p4@Creb3l3!1.25!16.65!Creb3l3;;chr7:19895384..19895399,-!p2@Fosb!1.22!21.82!Fosb;;chr10:80555299..80555306,-!p3@Creb3l3!1.22!15.50!Creb3l3;;chr15:79177964..79177986,+!p1@Maff!1.21!52.26!Maff;;chr7:20214704..20214800,-!p1@Relb!1.21!49.96!Relb;;chr8:77397492..77397514,+!p3@Isx!1.20!14.93!Isx;;chr8:77397095..77397127,+!p2@Isx!1.20!14.93!Isx;;chr2:163372869..163372882,+!p3@Hnf4a!1.20!14.93!Hnf4a;;chr12:78063146..78063159,-!p2@Max!1.19!37.33!Max;;chr19:46380235..46380277,+!p3@Nfkb2!1.19!31.01!Nfkb2;;chr8:125778192..125778217,+!p2@Zfp276!1.17!39.05!Zfp276;;chr4:133109285..133109308,+!p1@Nr0b2!1.17!13.78!Nr0b2;;chr12:58646974..58647003,-!p1@Foxa1!1.15!17.80!Foxa1;;chr14:76887526..76887555,+!p10@Tsc22d1!1.15!13.21!Tsc22d1;;chr11:70500401..70500460,-!p3@Camta2!1.15!13.21!Camta2;;chr15:35225845..35225867,+!p1@Osr2!1.13!31.58!Osr2;;chr8:87643578..87643593,-!p1@Zfp791!1.13!25.84!Zfp791;;chr17:27865882..27865901,-!p1@Spdef!1.13!12.63!Spdef;;chr1:194979361..194979373,+!p2@Irf6!1.12!16.65!Irf6;;chr8:77396650..77396662,+!p4@Isx!1.12!12.06!Isx;;chr7:19608891..19608895,-!p1@Foxa3!1.11!15.50!Foxa3;;chr18:64499706..64499721,+!p2@Onecut2!1.09!16.08!Onecut2;;chr18:35020854..35020869,+!p1@Egr1!1.08!426.08!Egr1;;chr4:55545337..55545357,-!p1@Klf4!1.08!164.23!Klf4;;chr7:134519473..134519502,-!p3@Zfp747!1.08!14.93!Zfp747;;chr3:94176733..94176794,+!p1@Rorc!1.07!83.26!Rorc;;chr7:29551464..29551487,-!p2@Nfkbib!1.07!41.92!Nfkbib;;chr16:55966492..55966517,+!p2@Rpl24,p2@Zbtb11!1.07!13.78!Zbtb11;;chr19:53384910..53384937,+!p3@Mxi1!1.06!29.86!Mxi1;;chr2:173044380..173044432,-!p1@Zbp1!1.06!25.27!Zbp1;;chr7:148452314..148452329,-!p1@Irf7!1.05!72.35!Irf7;;chr2:28477452..28477483,-!p1@Gfi1b!1.05!12.63!Gfi1b;;chr6:37391910..37391928,-!p3@Creb3l2!1.05!11.48!Creb3l2;;chr9:31720843..31720888,-!p1@Barx2!1.05!11.48!Barx2;;chr19:46379199..46379301,+!p1@Nfkb2!1.04!57.42!Nfkb2;;chr6:39068181..39068206,-!p3@Parp12!1.04!20.67!Parp12;;chr2:173044357..173044377,-!p2@Zbp1!1.04!14.36!Zbp1;;chr5:148118792..148118806,-!p3@Cdx2!1.03!9.76!Cdx2;;chr5:148118614..148118625,-!p4@Cdx2!1.03!9.76!Cdx2;;chr4:148178459..148178482,+!p4@Casz1!1.03!9.76!Casz1;;chr16:55822241..55822258,-!p1@Nfkbiz!1.02!296.30!Nfkbiz;;chr7:20408047..20408125,-!p1@Bcl3!1.02!110.25!Bcl3;;chr1:120524520..120524528,+!p1@Tfcp2l1!1.01!26.99!Tfcp2l1;;chr5:140267510..140267555,+!p2@Mafk!1.01!22.40!Mafk;;chr10:44178521..44178557,-!p1@Prdm1!1.01!16.65!Prdm1;;chr7:31206743..31206761,+!p1@Nfkbid!1.01!12.63!Nfkbid;;chr6:86619130..86619158,-!p2@Mxd1!1.00!133.22!Mxd1;;chr3:135354384..135354443,-!p1@Nfkb1!1.00!55.70!Nfkb1;;chr13:5860776..5860796,+!p1@Klf6!0.98!211.89!Klf6;;chr5:140267476..140267493,+!p1@Mafk!0.96!47.09!Mafk;;chr6:64679112..64679126,+!p1@Atoh1!0.96!8.04!Atoh1;;chr2:103123925..103123959,-!p3@Ehf!0.96!8.04!Ehf;;chr19:6996294..6996324,-!p2@Esrra!0.95!53.98!Esrra;;chr8:123260252..123260264,+!p1@Irf8!0.94!56.27!Irf8;;chr18:36953486..36953503,+!p2@Zmat2!0.94!13.21!Zmat2;;chr10:44178493..44178520,-!p3@Prdm1!0.94!10.91!Prdm1;;chr7:134519511..134519534,-!p2@Zfp747!0.93!14.36!Zfp747;;chr10:44178474..44178487,-!p4@Prdm1!0.93!10.91!Prdm1;;chr10:44178375..44178390,-!p2@Prdm1!0.93!10.34!Prdm1;;chr5:148118809..148118832,-!p5@Cdx2!0.93!7.47!Cdx2;;chr19:5560570..5560582,-!p2@Ovol1!0.93!7.47!Ovol1;;chr3:128916868..128916890,+!p1@Pitx2!0.92!10.34!Pitx2;;chr11:100948597..100948637,+!p1@Mlx!0.91!177.44!Mlx;;chr1:135320989..135321043,-!p1@Sox13!0.91!82.69!Sox13;;chr8:118231678..118231692,-!p2@Maf!0.91!67.19!Maf;;chr10:80600749..80600766,+!p2@Zbtb7a!0.91!38.47!Zbtb7a;;chr4:94718861..94718872,-!p2@Jun!0.90!53.98!Jun;;chr19:55816546..55816556,+!p3@Tcf7l2!0.90!27.56!Tcf7l2;;chr3:89197057..89197114,-!p1@Zbtb7b!0.90!24.69!Zbtb7b;;chr18:11052485..11052508,+!p2@Gata6!0.90!20.10!Gata6;;chr3:87329568..87329589,+!p2@Etv3!0.90!9.76!Etv3;;chr19:53384985..53385042,+!p1@Mxi1!0.88!212.47!Mxi1;;chr13:112476433..112476448,+!p2@Mier3!0.87!12.63!Mier3;;chr9:63869890..63869908,-!p6@Smad6!0.87!8.61!Smad6;;chr11:98636508..98636524,-!p3@Nr1d1!0.87!8.04!Nr1d1;;chr4:43575544..43575565,+!p2@Creb3!0.86!38.47!Creb3;;chr1:189433521..189433548,+!p5@Esrrg!0.86!6.32!Esrrg;;chr7:29551488..29551529,-!p1@Nfkbib!0.85!205.58!Nfkbib;;chr2:152561980..152561997,+!p1@Id1!0.85!188.35!Id1;;chr5:120121020..120121049,+!p1@Tbx3!0.85!39.05!Tbx3;;chr17:45692642..45692663,+!p1@Nfkbie!0.85!20.67!Nfkbie;;chr13:30076280..30076334,-!p3@E2f3!0.85!18.95!E2f3;;chr6:39068210..39068251,-!p1@Parp12!0.84!29.29!Parp12;;chr11:98636400..98636418,-!p4@Nr1d1!0.84!8.04!Nr1d1;;chr1:135320962..135320981,-!p2@Sox13!0.83!20.67!Sox13;;chr5:32438894..32438908,+!p2@Fosl2!0.83!12.63!Fosl2;;chr9:31720903..31720918,-!p2@Barx2!0.83!5.74!Barx2;;chr7:20214018..20214024,-!p4@Relb!0.83!5.74!Relb;;chr8:73222425..73222444,+!p2@Jund!0.83!5.74!Jund;;chr1:173144144..173144176,+!p1@Nr1i3!0.83!5.74!Nr1i3;;chr8:79426176..79426275,+!p1@Nr3c2!0.82!29.86!Nr3c2;;chr5:76733981..76734018,-!p3@Clock!0.82!12.63!Clock;;chr4:94718879..94718898,-!p1@Jun!0.80!414.02!Jun;;chr4:124805092..124805135,-!p2@Zc3h12a!0.80!24.12!Zc3h12a;;chr12:85657780..85657815,+!p2@Zfp410!0.80!14.93!Zfp410;;chr7:87170879..87170914,+!p2@Zfp710!0.80!13.21!Zfp710;;chr2:91035197..91035237,-!p1@Nr1h3!0.80!11.48!Nr1h3;;chr18:11052642..11052659,+!p1@Gata6!0.79!28.14!Gata6;;chr3:89197216..89197258,-!p3@Zbtb7b!0.79!11.48!Zbtb7b;;chr17:28409136..28409150,+!p3@Ppard!0.79!5.17!Ppard;;chr2:180069640..180069660,-!p4@Gata5!0.79!5.17!Gata5;;chr1:189432634..189432643,+!p8@Esrrg!0.79!5.17!Esrrg;;chr1:194979383..194979393,+!p3@Irf6!0.79!5.17!Irf6;;chr2:166888058..166888105,-!p2@Znfx1!0.78!17.23!Znfx1;;chr5:65194752..65194769,+!p1@Klf3!0.77!179.73!Klf3;;chr15:85566051..85566080,+!p4@Ppara!0.77!5.74!Ppara;;chr2:103143336..103143367,-!p1@Ehf!0.76!8.04!Ehf;;chr5:32438831..32438878,+!p1@Fosl2!0.75!52.83!Fosl2;;chr15:25914114..25914128,+!p2@Zfp622!0.75!20.67!Zfp622;;chr14:63890519..63890539,-!p3@Gata4!0.75!4.59!Gata4;;chr2:28477422..28477433,-!p2@Gfi1b!0.75!4.59!Gfi1b;;chr2:180069410..180069421,-!p3@Gata5!0.75!4.59!Gata5;;chr1:165219345..165219366,-!p7@Prrx1!0.75!4.59!Prrx1;;chr10:126727842..126727859,+!p1@Ddit3!0.74!142.98!Ddit3;;chr19:46380172..46380231,+!p2@Nfkb2!0.74!34.45!Nfkb2;;chr17:45692676..45692695,+!p2@Nfkbie!0.74!9.76!Nfkbie;;chr3:30993616..30993634,+!p3@Skil!0.74!8.61!Skil;;chr2:91035254..91035271,-!p3@Nr1h3!0.74!5.74!Nr1h3;;chr8:118231705..118231722,-!p3@Maf!0.73!39.05!Maf;;chr18:75527009..75527027,+!p1@Smad7!0.72!99.92!Smad7;;chr17:48061381..48061399,-!p1@Foxp4!0.72!53.98!Foxp4;;chr10:80813050..80813114,-!p2@Hmg20b!0.72!51.68!Hmg20b;;chr7:20162663..20162678,+!p1@Zfp296!0.72!5.74!Zfp296;;chr1:194979301..194979310,+!p4@Irf6!0.72!5.17!Irf6;;chr10:80598209..80598236,+!p4@Zbtb7a!0.71!7.47!Zbtb7a;;chr11:53164556..53164567,+!p5@Aff4!0.71!6.89!Aff4;;chr4:148178559..148178603,+!p1@Casz1!0.70!12.63!Casz1;;chr5:148081686..148081715,+!p1@Pdx1!0.70!4.02!Pdx1;;chr2:147871627..147871641,-!p1@Foxa2!0.70!4.02!Foxa2;;chr14:63864337..63864381,-!p6@Gata4!0.70!4.02!Gata4;;chr4:135699731..135699747,+!p1@Id3!0.69!508.77!Id3;;chr2:160192793..160192809,-!p1@Mafb!0.69!66.61!Mafb;;chr4:135700687..135700719,+!p2@Id3!0.69!6.32!Id3;;chr10:107769168..107769215,+!p1@Pawr!0.68!43.64!Pawr;;chr6:140572352..140572382,+!p3@Aebp2!0.68!9.19!Aebp2;;chr15:79178060..79178074,+!p2@Maff!0.68!5.17!Maff;;chr3:87329494..87329565,+!p1@Etv3!0.67!64.31!Etv3;;chrX:7339938..7339963,+!p1@Tfe3!0.67!21.25!Tfe3;;chr18:11052606..11052633,+!p4@Gata6!0.67!10.34!Gata6;;chr11:98636531..98636559,-!p1@Nr1d1!0.66!23.54!Nr1d1;;chr4:148275237..148275311,+!p2@Casz1!0.66!16.65!Casz1;;chr18:36441119..36441158,+!p2@Pura!0.66!9.76!Pura;;chr11:96690797..96690813,-!p1@Nfe2l1!0.65!77.52!Nfe2l1;;chr14:79880971..79880992,+!p2@Elf1!0.65!51.68!Elf1;;chr8:725199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pm1!0.07!71.20!Adnp;;chr5:67698180..67698216,+!p1@Slc30a9!0.07!26.99!Slc30a9;;chr4:40216811..40216882,-!p1@Topors!0.07!19.52!Topors;;chr19:5424768..5424811,-!p2@Drap1!0.07!19.52!Drap1;;chr4:102787007..102787050,+!p1@Mier1!0.07!16.65!Mier1;;chr17:46693107..46693137,-!p1@Srf!0.07!9.76!Srf;;chr15:96117968..96118035,+!p1@Arid2!0.07!9.19!Arid2;;chr9:57684520..57684612,-!p1@Arid3b!0.07!8.61!Arid3b;;chr3:95021853..95021911,-!p1@Gabpb2!0.07!7.47!Gabpb2;;chr3:135354289..135354334,-!p3@Nfkb1!0.07!4.59!Nfkb1;;chr3:94641302..94641341,+!p3@Pogz!0.07!3.45!Pogz;;chr18:74375772..74375799,+!p2@Cxxc1!0.07!2.30!Cxxc1;;chr9:63869850..63869873,-!p2@Smad6!0.07!2.30!Smad6;;chr12:110031207..110031224,+!p5@Yy1!0.07!2.30!Yy1;;chr7:13420092..13420160,+!p2@Zfp110!0.07!1.15!Zfp110;;chr5:3647720..3647733,-!p3@Gatad1!0.07!1.15!Gatad1;;chr6:47998938..47998955,-!p2@Zfp777!0.07!0.57!Zfp777;;chr7:17200615..17200625,-!p9@Grlf1!0.07!0.57!Grlf1;;chr5:53981661..53981672,+!p5@Rbpj!0.07!0.57!Rbpj;;chr3:8667033..8667046,-!p3@Hey1!0.07!0.57!Hey1;;chr4:149610794..149610876,+!p2@LOC100045967,p2@LOC100503183,p3@Eno1,p3@Gm5506!0.07!0.57!Eno1;;chr2:17985518..17985540,+!p6@Mllt10!0.07!0.57!Mllt10;;chr16:11176344..11176353,-!p2@Zc3h7a!0.07!0.57!Zc3h7a;;chrX:148667771..148667803,+!p1@Kdm5c!0.06!56.85!Kdm5c;;chr2:72817045..72817123,-!p1@Sp3!0.06!32.73!Sp3;;chr6:140571997..140572136,+!p1@Aebp2!0.06!23.54!Aebp2;;chr10:80040030..80040072,-!p1@Klf16!0.06!20.10!Klf16;;chr16:95924005..95924042,+!p2@Ets2!0.06!17.80!Ets2;;chr5:123844791..123844835,+!p1@Mlxip!0.06!17.23!Mlxip;;chr15:102236700..102236764,+!p1@Sp1!0.06!14.93!Sp1;;chr16:98183746..98183801,-!p1@Zfp295!0.06!10.91!Zfp295;;chr10:79862223..79862261,-!p4@Mbd3!0.06!9.19!Mbd3;;chr12:100631220..100631300,-!p2@Foxn3!0.06!8.61!Foxn3;;chr8:125897750..125897758,+!p2@Tcf25!0.06!6.32!Tcf25;;chr11:98821749..98821799,+!p2@Rara!0.06!5.74!Rara;;chr8:97856080..97856150,-!p2@Zfp319!0.06!5.17!Zfp319;;chr6:37392159..37392172,-!p2@Creb3l2!0.06!4.02!Creb3l2;;chr7:148513409..148513455,-!p2@Deaf1!0.06!4.02!Deaf1;;chr16:55973950..55973977,+!p4@Rpl24,p4@Zbtb11!0.06!4.02!Zbtb11;;chr7:26053413..26053439,+!p4@Cic!0.06!3.45!Cic;;chr2:126501274..126501308,-!p2@Gabpb1!0.06!3.45!Gabpb1;;chr17:27693546..27693557,+!p6@Hmga1!0.06!2.87!Hmga1;;chr4:120624269..120624302,-!p1@Zfp69!0.06!2.87!Zfp69;;chr8:72662966..72662991,-!p3@LOC100048268,p3@Rfxank!0.06!2.87!Rfxank;;chr7:31742079..31742108,-!p4@LOC100504922,p4@Usf2!0.06!2.30!Usf2;;chr11:106993487..106993515,-!p2@Bptf!0.06!2.30!Bptf;;chr11:106134144..106134174,-!p3@Smarcd2!0.06!2.30!Smarcd2;;chr10:93610727..93610754,+!p2@Nr2c1!0.06!1.72!Nr2c1;;chr17:27693706..27693724,+!p4@Hmga1,p5@Hmga1-rs1!0.06!1.72!Hmga1;;chr16:3872286..3872315,-!p3@Zfp597!0.06!1.15!Zfp597;;chr18:3337465..3337498,-!p6@Crem!0.06!1.15!Crem;;chr13:44826634..44826645,+!p7@Jarid2!0.06!1.15!Jarid2;;chr4:149943326..149943351,+!p4@Rere!0.06!1.15!Rere;;chr4:154010228..154010244,-!p4@Prdm16!0.06!0.57!Prdm16;;chr17:87153505..87153516,+!p6@Epas1!0.06!0.57!Epas1;;chr16:30065394..30065398,+!p3@Hes1!0.06!0.57!Hes1;;chr2:126501184..126501196,-!p6@Gabpb1!0.06!0.57!Gabpb1;;chr12:75009147..75009157,+!p5@Hif1a!0.06!0.57!Hif1a;;chr7:135020660..135020688,+!p3@Zfp646!0.06!0.57!Zfp646;;chr8:118230847..118230856,-!p8@Maf!0.06!0.57!Maf;;chr8:112229401..112229419,+!p3@Zfp821!0.06!0.57!Zfp821;;chr6:124662297..124662371,+!p1@Phb2!0.05!202.13!Phb2;;chr2:160698721..160698745,-!p1@Zhx3!0.05!13.78!Zhx3;;chr7:6107541..6107572,-!p1@Zfp787!0.05!6.89!Zfp787;;chr17:33229391..33229442,+!p1@Zfp563!0.05!5.74!Zfp563;;chrX:98728074..98728116,+!p2@Taf1!0.05!5.74!Taf1;;chr18:69505414..69505465,+!p6@Tcf4!0.05!2.87!Tcf4;;chr11:98636575..98636607,-!p2@Nr1d1!0.05!2.87!Nr1d1;;chr2:164737086..164737108,-!p2@Zfp335!0.05!2.87!Zfp335;;chr9:21420610..21420621,+!p5@Smarca4!0.05!2.30!Smarca4;;chr9:63869729..63869749,-!p4@Smad6!0.05!1.15!Smad6;;chr6:47545052..47545064,-!p2@Ezh2!0.05!1.15!Ezh2;;chr6:92041506..92041517,+!p5@Nr2c2!0.05!0.57!Nr2c2;;chr2:162880306..162880319,+!p3@Mybl2!0.05!0.57!Mybl2;;chr13:59924319..59924331,-!p5@Zcchc6!0.05!0.57!Zcchc6;;chr19:9016355..9016540,+!p1@Mta2!0.04!81.54!Mta2;;chr8:72663586..72663633,+!p1@2310045N01Rik,p1@Mef2b!0.04!49.38!Mef2b;; | ||
Line 40: | Line 43: | ||
|is_a=EFO:0002091;;FF:0011159 | |is_a=EFO:0002091;;FF:0011159 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13228 | |||
|library_id_phase_based=2:CNhs13228 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;11845 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;11845 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.LQhCAGE/GP2%252b%2520M%2520cell%252c%2520pool1.CNhs13228.11845-124H9.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.LQhCAGE/GP2%252b%2520M%2520cell%252c%2520pool1.CNhs13228.11845-124H9.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.LQhCAGE/GP2%252b%2520M%2520cell%252c%2520pool1.CNhs13228.11845-124H9.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.LQhCAGE/GP2%252b%2520M%2520cell%252c%2520pool1.CNhs13228.11845-124H9.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.LQhCAGE/GP2%252b%2520M%2520cell%252c%2520pool1.CNhs13228.11845-124H9.mm9.nobarcode.rdna.fa.gz | |||
|name=GP2+ M cell, pool1 | |name=GP2+ M cell, pool1 | ||
|namespace= | |namespace= | ||
Line 45: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13228,LSID1006,release012,COMPLETED | |profile_hcage=CNhs13228,LSID1006,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=-0.0192612331825155,0,0,0,0,0,-0.26739664021754,0,0,0,0,-0.0843392403965415,0,0,0,0,0.166064033233336,0,-0.191893350882575,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.361354066008304,0,0.518109443993596,0,0,-0.0165688761441002,-0.0432586922624896,-0.138920890718558,0.255752287044959,-0.984211366477826,-0.269868638010351,0,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0.154221771232853,0,-0.0321622022929229,0,0,-0.0487672192730093,-0.243225778194271,-0.310650657339386,-0.158091042771083,-0.140687683267293,0,-0.0780086007519514,-0.0871481873453718,-0.276660860310968,0,0,-0.0762446085579826,0.0737342952798195,-0.0778054367469735,-0.0788315948399074,0,0,0,0,0,0.197068726315728,-0.0814866010703366,-0.589157811726724,0.0462309289978455,0,0,0,0,0 | |repeat_enrich_byfamily=-0.0192612331825155,0,0,0,0,0,-0.26739664021754,0,0,0,0,-0.0843392403965415,0,0,0,0,0.166064033233336,0,-0.191893350882575,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.361354066008304,0,0.518109443993596,0,0,-0.0165688761441002,-0.0432586922624896,-0.138920890718558,0.255752287044959,-0.984211366477826,-0.269868638010351,0,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0.154221771232853,0,-0.0321622022929229,0,0,-0.0487672192730093,-0.243225778194271,-0.310650657339386,-0.158091042771083,-0.140687683267293,0,-0.0780086007519514,-0.0871481873453718,-0.276660860310968,0,0,-0.0762446085579826,0.0737342952798195,-0.0778054367469735,-0.0788315948399074,0,0,0,0,0,0.197068726315728,-0.0814866010703366,-0.589157811726724,0.0462309289978455,0,0,0,0,0 | ||
Line 82: | Line 96: | ||
|top_motifs=HNF4A_NR2F1,2:2.77303766355;ESRRA:2.49954644943;ZEB1:2.49721700943;FOSL2:2.2325571069;SNAI1..3:2.07926963894;NFIX:2.00495677301;NFKB1_REL_RELA:1.92496756384;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.91286050426;FOXN1:1.77599875436;PAX2:1.74891519397;HNF1A:1.69302014902;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.59514729383;FOS_FOS{B,L1}_JUN{B,D}:1.57026821866;ATF6:1.55552986322;PPARG:1.52186621335;PDX1:1.46328262062;TBX4,5:1.42613697568;ATF4:1.37232582159;AR:1.35381199831;NR1H4:1.32557718022;BACH2:1.32542714889;ARID5B:1.32279243254;NR6A1:1.31465691907;STAT2,4,6:1.31423399554;FOXM1:1.2353604311;IRF1,2:1.22101959411;HES1:1.220253854;STAT5{A,B}:1.07002893638;ADNP_IRX_SIX_ZHX:1.05954634034;ATF5_CREB3:1.0056236643;TP53:1.00169137497;ELK1,4_GABP{A,B1}:0.980673121628;LMO2:0.944106248548;DMAP1_NCOR{1,2}_SMARC:0.935341347423;SP1:0.922110035585;GTF2A1,2:0.898669821796;NR5A1,2:0.840359990908;ZBTB6:0.796361014842;FOX{I1,J2}:0.74820090282;MYOD1:0.702511620048;PAX8:0.664837499781;LHX3,4:0.621922512449;XCPE1{core}:0.620902637861;VSX1,2:0.602554292714;HLF:0.596480819364;ZNF148:0.561010368734;NKX6-1,2:0.556025798378;CREB1:0.533667416034;FOXL1:0.524729526574;TBP:0.457861544723;EBF1:0.393479259784;POU2F1..3:0.365128792992;bHLH_family:0.333729736648;SPI1:0.320306671698;TLX1..3_NFIC{dimer}:0.294243541461;CDX1,2,4:0.272491642441;FOX{D1,D2}:0.262900417351;T:0.262595993359;ESR1:0.261141850335;ETS1,2:0.166004440157;YY1:0.142683568265;ONECUT1,2:0.126779885737;TFCP2:0.103805552956;STAT1,3:0.0700725701604;RORA:0.0249305373602;FOXA2:0.0238427546198;JUN:-0.00936752285102;ELF1,2,4:-0.0139081678754;GATA6:-0.0635679119921;NFE2:-0.0661185558487;IRF7:-0.0675318191526;RUNX1..3:-0.140683921895;CRX:-0.152213995527;ALX4:-0.166395683676;MAFB:-0.190836128815;ZNF423:-0.208329000972;NFY{A,B,C}:-0.218047888357;TAL1_TCF{3,4,12}:-0.24614834704;FOXO1,3,4:-0.247015514342;CUX2:-0.247465759084;MYB:-0.281573013439;HBP1_HMGB_SSRP1_UBTF:-0.297609348367;SREBF1,2:-0.332834978495;SRF:-0.342499066372;NFE2L2:-0.350763398675;RXRA_VDR{dimer}:-0.354367194171;LEF1_TCF7_TCF7L1,2:-0.419370900697;OCT4_SOX2{dimer}:-0.442058941025;NANOG:-0.44856390947;HOX{A4,D4}:-0.457196626625;NANOG{mouse}:-0.461738934789;TEAD1:-0.488665975522;POU6F1:-0.49112405513;FOXQ1:-0.545223521819;TFAP4:-0.557371111788;MED-1{core}:-0.586049756915;TFAP2B:-0.586827544498;MEF2{A,B,C,D}:-0.614376221077;PAX6:-0.639643794902;GFI1B:-0.66224630027;PRRX1,2:-0.683123494871;EP300:-0.701265218188;FOX{F1,F2,J1}:-0.718201074172;HSF1,2:-0.726203029026;REST:-0.727399125617;NKX2-1,4:-0.730746721601;RFX1:-0.778439199422;POU3F1..4:-0.784377767259;RXR{A,B,G}:-0.78464473458;GFI1:-0.830728273121;TFAP2{A,C}:-0.841265354337;MAZ:-0.852628601988;PBX1:-0.862161626719;CDC5L:-0.906486734805;PAX5:-0.939081710425;SMAD1..7,9:-0.946365774313;NFIL3:-0.966222339564;ZFP161:-0.985894650218;FOXP3:-0.985926078206;SOX17:-0.988428166237;MYFfamily:-1.00240463481;E2F1..5:-1.0142535231;HIF1A:-1.02441142543;NKX3-2:-1.03033687726;POU5F1:-1.04053881929;SPIB:-1.0418031704;BPTF:-1.06856340368;NKX2-2,8:-1.07456251583;AHR_ARNT_ARNT2:-1.07651769921;ZNF143:-1.08129959103;EGR1..3:-1.08609881672;HOXA9_MEIS1:-1.11920148288;HIC1:-1.12621500659;NKX2-3_NKX2-5:-1.12745472356;SPZ1:-1.13550745497;SOX5:-1.16223685176;GZF1:-1.16936230005;NRF1:-1.17331927977;EVI1:-1.20234283944;TGIF1:-1.21373487077;CEBPA,B_DDIT3:-1.21477741476;NFE2L1:-1.23170485905;DBP:-1.24487396793;SOX{8,9,10}:-1.25691480182;ZNF238:-1.25963221854;RFX2..5_RFXANK_RFXAP:-1.27993472642;TLX2:-1.31743866793;MTE{core}:-1.3348323019;HOX{A5,B5}:-1.33911267179;SOX2:-1.33929058772;BREu{core}:-1.34256303681;GTF2I:-1.36291299867;MTF1:-1.36798601374;NHLH1,2:-1.37156716645;MYBL2:-1.41896663232;UFEwm:-1.48298077174;PITX1..3:-1.50102830422;ATF2:-1.52948686021;MZF1:-1.53458983574;PATZ1:-1.5401118106;AIRE:-1.55779833987;ALX1:-1.57720430897;HMX1:-1.63074890353;ZNF384:-1.69453134835;TOPORS:-1.71015045312;ZBTB16:-1.72928445812;GLI1..3:-1.76693922169;GCM1,2:-1.77625640575;HAND1,2:-1.7822804448;GATA4:-1.78963628305;NR3C1:-1.83853849648;POU1F1:-1.84545277138;IKZF1:-1.85500725461;PRDM1:-1.86424930955;KLF4:-1.87590933546;NFATC1..3:-1.88633517285;PAX1,9:-1.91110200348;ZIC1..3:-1.91828669252;FOXD3:-1.95365953329;RBPJ:-1.95717487802;RREB1:-1.96459361961;TFDP1:-1.96506614969;PAX4:-1.99822589448;NKX3-1:-2.07384880996;FOXP1:-2.12686372632;HMGA1,2:-2.21819527022;EN1,2:-2.21835704952;TEF:-2.4360587035;IKZF2:-2.48284004211 | |top_motifs=HNF4A_NR2F1,2:2.77303766355;ESRRA:2.49954644943;ZEB1:2.49721700943;FOSL2:2.2325571069;SNAI1..3:2.07926963894;NFIX:2.00495677301;NFKB1_REL_RELA:1.92496756384;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.91286050426;FOXN1:1.77599875436;PAX2:1.74891519397;HNF1A:1.69302014902;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.59514729383;FOS_FOS{B,L1}_JUN{B,D}:1.57026821866;ATF6:1.55552986322;PPARG:1.52186621335;PDX1:1.46328262062;TBX4,5:1.42613697568;ATF4:1.37232582159;AR:1.35381199831;NR1H4:1.32557718022;BACH2:1.32542714889;ARID5B:1.32279243254;NR6A1:1.31465691907;STAT2,4,6:1.31423399554;FOXM1:1.2353604311;IRF1,2:1.22101959411;HES1:1.220253854;STAT5{A,B}:1.07002893638;ADNP_IRX_SIX_ZHX:1.05954634034;ATF5_CREB3:1.0056236643;TP53:1.00169137497;ELK1,4_GABP{A,B1}:0.980673121628;LMO2:0.944106248548;DMAP1_NCOR{1,2}_SMARC:0.935341347423;SP1:0.922110035585;GTF2A1,2:0.898669821796;NR5A1,2:0.840359990908;ZBTB6:0.796361014842;FOX{I1,J2}:0.74820090282;MYOD1:0.702511620048;PAX8:0.664837499781;LHX3,4:0.621922512449;XCPE1{core}:0.620902637861;VSX1,2:0.602554292714;HLF:0.596480819364;ZNF148:0.561010368734;NKX6-1,2:0.556025798378;CREB1:0.533667416034;FOXL1:0.524729526574;TBP:0.457861544723;EBF1:0.393479259784;POU2F1..3:0.365128792992;bHLH_family:0.333729736648;SPI1:0.320306671698;TLX1..3_NFIC{dimer}:0.294243541461;CDX1,2,4:0.272491642441;FOX{D1,D2}:0.262900417351;T:0.262595993359;ESR1:0.261141850335;ETS1,2:0.166004440157;YY1:0.142683568265;ONECUT1,2:0.126779885737;TFCP2:0.103805552956;STAT1,3:0.0700725701604;RORA:0.0249305373602;FOXA2:0.0238427546198;JUN:-0.00936752285102;ELF1,2,4:-0.0139081678754;GATA6:-0.0635679119921;NFE2:-0.0661185558487;IRF7:-0.0675318191526;RUNX1..3:-0.140683921895;CRX:-0.152213995527;ALX4:-0.166395683676;MAFB:-0.190836128815;ZNF423:-0.208329000972;NFY{A,B,C}:-0.218047888357;TAL1_TCF{3,4,12}:-0.24614834704;FOXO1,3,4:-0.247015514342;CUX2:-0.247465759084;MYB:-0.281573013439;HBP1_HMGB_SSRP1_UBTF:-0.297609348367;SREBF1,2:-0.332834978495;SRF:-0.342499066372;NFE2L2:-0.350763398675;RXRA_VDR{dimer}:-0.354367194171;LEF1_TCF7_TCF7L1,2:-0.419370900697;OCT4_SOX2{dimer}:-0.442058941025;NANOG:-0.44856390947;HOX{A4,D4}:-0.457196626625;NANOG{mouse}:-0.461738934789;TEAD1:-0.488665975522;POU6F1:-0.49112405513;FOXQ1:-0.545223521819;TFAP4:-0.557371111788;MED-1{core}:-0.586049756915;TFAP2B:-0.586827544498;MEF2{A,B,C,D}:-0.614376221077;PAX6:-0.639643794902;GFI1B:-0.66224630027;PRRX1,2:-0.683123494871;EP300:-0.701265218188;FOX{F1,F2,J1}:-0.718201074172;HSF1,2:-0.726203029026;REST:-0.727399125617;NKX2-1,4:-0.730746721601;RFX1:-0.778439199422;POU3F1..4:-0.784377767259;RXR{A,B,G}:-0.78464473458;GFI1:-0.830728273121;TFAP2{A,C}:-0.841265354337;MAZ:-0.852628601988;PBX1:-0.862161626719;CDC5L:-0.906486734805;PAX5:-0.939081710425;SMAD1..7,9:-0.946365774313;NFIL3:-0.966222339564;ZFP161:-0.985894650218;FOXP3:-0.985926078206;SOX17:-0.988428166237;MYFfamily:-1.00240463481;E2F1..5:-1.0142535231;HIF1A:-1.02441142543;NKX3-2:-1.03033687726;POU5F1:-1.04053881929;SPIB:-1.0418031704;BPTF:-1.06856340368;NKX2-2,8:-1.07456251583;AHR_ARNT_ARNT2:-1.07651769921;ZNF143:-1.08129959103;EGR1..3:-1.08609881672;HOXA9_MEIS1:-1.11920148288;HIC1:-1.12621500659;NKX2-3_NKX2-5:-1.12745472356;SPZ1:-1.13550745497;SOX5:-1.16223685176;GZF1:-1.16936230005;NRF1:-1.17331927977;EVI1:-1.20234283944;TGIF1:-1.21373487077;CEBPA,B_DDIT3:-1.21477741476;NFE2L1:-1.23170485905;DBP:-1.24487396793;SOX{8,9,10}:-1.25691480182;ZNF238:-1.25963221854;RFX2..5_RFXANK_RFXAP:-1.27993472642;TLX2:-1.31743866793;MTE{core}:-1.3348323019;HOX{A5,B5}:-1.33911267179;SOX2:-1.33929058772;BREu{core}:-1.34256303681;GTF2I:-1.36291299867;MTF1:-1.36798601374;NHLH1,2:-1.37156716645;MYBL2:-1.41896663232;UFEwm:-1.48298077174;PITX1..3:-1.50102830422;ATF2:-1.52948686021;MZF1:-1.53458983574;PATZ1:-1.5401118106;AIRE:-1.55779833987;ALX1:-1.57720430897;HMX1:-1.63074890353;ZNF384:-1.69453134835;TOPORS:-1.71015045312;ZBTB16:-1.72928445812;GLI1..3:-1.76693922169;GCM1,2:-1.77625640575;HAND1,2:-1.7822804448;GATA4:-1.78963628305;NR3C1:-1.83853849648;POU1F1:-1.84545277138;IKZF1:-1.85500725461;PRDM1:-1.86424930955;KLF4:-1.87590933546;NFATC1..3:-1.88633517285;PAX1,9:-1.91110200348;ZIC1..3:-1.91828669252;FOXD3:-1.95365953329;RBPJ:-1.95717487802;RREB1:-1.96459361961;TFDP1:-1.96506614969;PAX4:-1.99822589448;NKX3-1:-2.07384880996;FOXP1:-2.12686372632;HMGA1,2:-2.21819527022;EN1,2:-2.21835704952;TEF:-2.4360587035;IKZF2:-2.48284004211 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:11845-124H9;search_select_hide=table117:11845-124H9 | |||
}} | }} |
Latest revision as of 18:23, 4 June 2020
Name: | GP2+ M cell, pool1 |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs13228 |
Sample type: | primary cells |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
ExpandAdditional information |
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ExpandCAGE Accession numbers |
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ExpandDownload raw sequence, BAM & CTSS |
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs13228
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13228
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13228
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13228
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000473 (defensive cell)
0000255 (eukaryotic cell)
0000627 (transporting cell)
0000682 (M cell of gut)
FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0011159 (mouse GP2-positive M cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA