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Browse Transcription Factors hg19: Difference between revisions

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{{Loading|loadingimage=sprites.gif}}{{#vardefine:geneids_content|{{#ask:[[Category:EntrezGene]][[tax_id::9606]][[tf?::true]]
|?GeneID
|?Symbol
|?Associated motif id
|?Description
|format=array
|headers=hide
|sort=Symbol
|order=DESC
|mainlabel=-
|sep=?
|propsep=/
|manysep=!
|recordsep=<RCRD>
}}
}}
{{#vardefine:db_content}}
{{#arraydefine:geneids_array|{{#var:geneids_content}}|?}}
{{
  #loop: j
  | 0         
  | {{#arraysize:geneids_array}}
  | <nowiki/>
{{#vardefine:ID|{{#explode:{{#arrayindex:geneids_array|{{#var:j}}}}|/|0}}}}
{{#vardefine:Symbol|{{#explode:{{#arrayindex:geneids_array|{{#var:j}}}}|/|1}}}}
{{#vardefine:MotifId|{{#explode:{{#arrayindex:geneids_array|{{#var:j}}}}|/|2}}}}
{{#vardefine:Description|{{#explode:{{#arrayindex:geneids_array|{{#var:j}}}}|/|3}}}}
{{#vardefine:PeakCount|{{#ask: [[Category:FFCP]][[EntrezGene::{{#var:ID}}]]|format=count}}}}
{{#arraydefine: defined_array{{#var:j}} |{{#var:ID}}/{{#var:Symbol}}/{{#var:MotifId}}/{{#var:Description}}/{{#var:PeakCount}}}}
{{#vardefine:db_content|{{#arrayprint:defined_array{{#var:j}}}}?{{#var:db_content}}  }}
}}
==Human transcription factors==
<html>
<html>
<script type="text/javascript" src="/5/sstar/rb_js/jquery-1.7.1.min.js"></script>
<script type="text/javascript" src="/5/sstar/rb_js/html5button/datatables.min.js"></script>
<style type="text/css" title="currentStyle">
<style type="text/css" title="currentStyle">
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
@import "/5/sstar/rb_js/html5button/datatables.css";
 
.ImageBorder
{
    border:1px solid lightgrey;
    width      : 90px;
    height      : 20px;
}
 
</style>
</style>
<script type="text/javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script>
<script type="text/javascript">
            var content = "";
            var m_data = {};
            m_data.content = [];


<script type="text/javascript">
$(document).ready(function() {
$(document).ready(function() {
$('.tf_table').dataTable( {
                    content= "</html>{{#var:db_content}}<html>";
"iDisplayLength": 25,
 
"aLengthMenu": [[25, 100, -1], [25, 100, "All"]],
                    var content_array = content.split("?");
"aaSorting": [[1, "asc"]],
                    for(i=0;i<content_array.length-1;i++){
"aoColumnDefs": [{"bSortable": false, "aTargets": ["_all"] }]
                    var temp = content_array[i];
                    var temp_array =temp.split("/");
                    var mot_id="";
                        if(temp_array[2].length> 0){ mot_id=temp_array[2];}else{mot_id="NA";}
                   
                    m_data.content.push({EntrezGene:'<a href=/5/sstar/EntrezGene:'+temp_array[0]+'>'+temp_array[0]+'</a>',            Symbol:temp_array[1],MotifId:mot_id,Description:temp_array[3],PeakCount:temp_array[4]});
               
                }
$('#tf_table').DataTable( {
        dom: 'Blfrtip',
                processing: true,
                pageLength: 25,
        buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'],
        lengthMenu: [[10, 25, 50, -1], [10, 25, 50, "All"]],
                scrollCollapse: true,
                autoWidth: false,
                jQueryUI: false,
                order: [[ 2, "asc" ]],
                data: m_data.content,
        columns: [
{ data: "EntrezGene", title: "EntrezGene"},
            { data: "Symbol", title: "Symbol"},
            { data: "MotifId", title: "Associated Motif",
              render: function ( data, type, row, meta ) {
var motid = data;
if (motid == "NA") {
    return_val = "NA";
} else {
    var splitted = motid.split("!");
    if (splitted!=null) {
        if (splitted.length > 1) {
            var return_val = "";
            for (i = 0; i < splitted.length; i++) {
                if (splitted[i].toString().indexOf("JASPAR motif") >= 0) {
                    return_val = '<a href=\"/5/sstar/' + splitted[i] + '\"><img src=\"/5/sstar/seqlogo/jaspar/' + splitted[i].split(":")[1] + '.png"  class="ImageBorder"  alt="' + splitted[i] + '">' + '</a>' + return_val;
                } else if (splitted[i].toString().indexOf("Swissregulon") >= 0) {
                    /*return_val = '<a href=\"/5/sstar/'+ splitted[i] + '\"><img src=\"/5/sstar/seqlogo/' + replaceAll(splitted[i].split(":")[1]," ","_") + '.png"  class="ImageBorder"  alt="' + splitted[i] + '">' + '</a>' + return_val;*/
return_val = "";
                }
                else{
                    return_val = "";
                }
            }
        } else {
            if (splitted[0].toString().indexOf("JASPAR motif") >= 0) {
                return_val = '<a href=\"/5/sstar/' + splitted[0] + '\"><img src=\"/5/sstar/seqlogo/jaspar/' + splitted[0].split(":")[1] + '.png"  class="ImageBorder"  alt="' + splitted[0] + '">' + '</a>';
            } else if (splitted[0].toString().indexOf("Swissregulon") >= 0) {
 
              /* return_val = '<a href=\"/5/sstar/' + splitted[0] + '\"><img src=\"/5/sstar/seqlogo/' + replaceAll(splitted[0].split(":")[1]," ","_") + '.png"  class="ImageBorder" alt="' + splitted[0] + '">' + '</a>';*/
return_val = "";
            }
            else{
                    return_val = "";
                }
        }
    } else {
        return_val = "NA";
    }
}
 
return return_val;
}
                                },
                                {data: "Description",title: "Description"},
                                {data: "PeakCount",title: "#of peaks"}
                                ]
} );
} );
} );
} );
function replaceAll(str, token, newtoken) {
    if(token!=newtoken)
    while(str.indexOf(token) > -1) {
        str = str.replace(token, newtoken);
    }
    return str;
}
</script>
</script>
<span id="export_tool"></span>
</html>
</html>


(caution: not implemented yet)
<table cellpadding="0" cellspacing="0" border="0" class="stripe cell-border order-column compact" id="tf_table"> 
 
</table>
== Human ==
* [[EntrezGene:1958]]
* [[EntrezGene:1386]]
 
 
 
== Mouse ==
{{#ask:[[Category:EntrezGene]][[tax_id::10090]][[tf?::true]]|mainlabel=EntreGene ID|?symbol|?description|format=ttable|class=tf_table|searchlabel=}}

Latest revision as of 09:57, 21 September 2021



Human transcription factors

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