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{{Fontsize|3|TSS regions }}
{{Fontsize|3|TSS regions }}
----
----
{{#ask:[[FFCP PHASE2:+]][[Category:FFCP]][[EntrezGene::{{{GeneID}}}]]|?Short_description|format=ttable|mainlabel=TSS peak ID|class=ffcp_list stripe cell-border order-column compact|limit=20000}}
{{#ask:[[FFCP PHASE2:+]][[Category:FFCP]][[EntrezGene::{{{GeneID}}}]]|?Short_description|format=table|class=ffcp_list stripe cell-border order-column compact|headers=hide|limit=20000|searchlabel=　... further results}}
<br>
<br>
<html>
<html>
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         dom: 'Blfrtip',
         dom: 'Blfrtip',
         lengthMenu: [[10, 25, 50, -1], [10, 25, 50, "All"]],
         lengthMenu: [[10, 25, 50, -1], [10, 25, 50, "All"]],
         buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5']
         buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'],
        columns: [{title:"TSS peak ID"},{title:"Short_description"}]
});
});


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<html>
<html>
<script type="text/javascript" src="/5/sstar/rb_js/html5button/datatables.min.js"></script>
<script type="text/javascript" src="/5/sstar/rb_js/html5button/datatables.min.js"></script>
<script type="text/javascript" language="javascript" src="/5/sstar/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>
<script type="text/javascript" language="javascript" src="/5/sstar/rb_js/flot/jquery.flot.min.js"></script>
<script type="text/javascript" language="javascript" src="/5/sstar/rb_js/flot/jquery.flot.min.js"></script>
<style type="text/css" title="currentStyle">
<style type="text/css" title="currentStyle">
@import "/5/sstar/rb_js/html5button/datatables.css";
@import "/5/sstar/rb_js/html5button/datatables.css";
@import "/5/sstar/rb_js/datatables/extras/TableTools/media/css/TableTools.css";
</style>
</style>


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<script type="text/javascript">
<script type="text/javascript">
$(document).ready(function() {
$(document).ready(function() {
    var orderArr;
    if($('#gene_exptable')[0].rows[1].cells.length>1){
        orderArr = [[1,'desc']];
    } else {
        orderArr = [[0,'asc']];
    }
     var oTable =  $('#gene_exptable').DataTable({
     var oTable =  $('#gene_exptable').DataTable({
                 dom: 'Bfrti',
                 dom: 'Bfrti',
scrollY: "300px",
scrollY: "300px",
scrollCollapse: true,
scrollCollapse: true,
order: orderArr,
                 paging: false,
                 paging: false,
order: [[1,'desc']],
buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'],
buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'],
columnDefs: [{ orderSequence: [ "asc", "desc" ], type: "html", targets: [ 0 ] }, { orderSequence: [ "desc", "asc" ], targets: [ "_all" ] } ]
columnDefs: [{ orderSequence: [ "asc", "desc" ], type: "html", targets: [ 0 ] }, { orderSequence: [ "desc", "asc" ], targets: [ "_all" ] } ]
});
});
$('#gene_exptable_wrapper .dataTables_scrollHead th').css("height", "100px").css("vertical-align", "bottom");
$('#gene_exptable_wrapper .dataTables_scrollHead th').css("height", "100px").css("vertical-align", "bottom");


var data = [];
var data = [];
Line 124: Line 128:


var plot1 = $.plot($("#gene_exptable_chart"), plotdata, {
var plot1 = $.plot($("#gene_exptable_chart"), plotdata, {
                 yaxis : { axisLabel : 'TPM' },
                 yaxis: { axisLabel: 'TPM' },
lines : { show : false },
lines: { show: false },
points : { show : true },
points: { show: true },
                 grid: { hoverable: true, clickable: true },
                 grid: { hoverable: true, clickable: true },
xaxis : { tickDecimals : 0, show: false },
xaxis: { tickDecimals: 0, show: false },
                 legend: { show: false }
                 legend: { show: false }
});
});
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collectdata();
collectdata();
drawchart();
if($('#gene_exptable')[0].rows[1].cells.length>1){
    drawchart();
}


// re-draw chart event
// re-draw chart event
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         $("#y").text(pos.y.toFixed(2));
         $("#y").text(pos.y.toFixed(2));
             if (item) {
             if (item) {
                 if (previousPoint != item.dataIndex) {
                 if (previousPoint!=item.dataIndex) {
                     previousPoint = item.dataIndex;
                     previousPoint = item.dataIndex;
                      
                      
Line 229: Line 235:


{{Fontsize|3|ENCODE TF ChIP-seq peak enrichment analysis }}{{#info:Analyst: Erik Arner <br>Summary: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <nowiki><=</nowiki>  0.05)  after Benjamini-Hochberg correction were retained.  <br>
{{Fontsize|3|ENCODE TF ChIP-seq peak enrichment analysis }}{{#info:Analyst: Erik Arner <br>Summary: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <nowiki><=</nowiki>  0.05)  after Benjamini-Hochberg correction were retained.  <br>
<br><br>link to source dataset.<br>[http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters data]
<br><br>link to source dataset.<br>[//fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters data]
}}  
}}  
----
----

Latest revision as of 11:48, 22 September 2021

Symbol:{{{Symbol}}}
Description:{{{description}}}
Synonyms:
Species:NA
Xrefs:
EntrezGene:{{{GeneID}}}
{{{dbXrefs}}}:[NA ]
Associated motifs:NA
Transcripton Factor?: No

TSS regions



View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


TSS expression









  • Click each plot point to find sample in table

ENCODE TF ChIP-seq peak enrichment analysis Analyst: Erik Arner <br>Summary: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><br><br>link to source dataset.<br>data

No analysis results for this cluster

Details<b>Summary:</b>It includes sequences from the international sequence collaboration, Swiss-Prot, and RefSeq. The RefSeq subset of this file is also available as gene2refseq.<br><br>links to source dataset.<br>human <br>mouse

GeneID:{{{GeneID}}}
LocusTag:{{{LocusTag}}}
chromosome:{{{chromosome}}}
map location:
type of gene:{{{type_of_gene}}}
Symbol from
nomenclature authority:		{{{Symbol_from_nomenclature_authority}}}
Full name from
nomenclature authority:		{{{Full_name_from_nomenclature_authority}}}
Nomenclature status:{{{Nomenclature_status}}}
Other designations:
Modification date:Error: Invalid time.







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