Personal tools

CL:1000487: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{CL |id=CL:1000487 |name=smooth muscle cell of prostate |namespace=cell |def="A smooth muscle cell that is part of the prostate gland." [GOC:tfm] |xref=FMA:84583 |is_a=...")
 
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{CL
{{CL
|id=CL:1000487
|alt_id=
|name=smooth muscle cell of prostate
|namespace=cell
|def="A smooth muscle cell that is part of the prostate gland." [GOC:tfm]
|xref=FMA:84583
|is_a=CL:0000192
|synonym="smooth muscle fiber of prostate" EXACT [FMA:84583]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A smooth muscle cell that is part of the prostate gland." [GOC:tfm]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:1000487
|is_a=CL:0000192
|is_obsolete=
|located_in=
|located_in=
|name=smooth muscle cell of prostate
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002367
|part_of=UBERON:0002367
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym="smooth muscle fiber of prostate" EXACT [FMA:84583]
|union_of=
|xref=FMA:84583
}}
}}

Latest revision as of 16:47, 12 September 2014

Name:smooth muscle cell of prostate
Namespace:FANTOM
Definition:"A smooth muscle cell that is part of the prostate gland." [GOC:tfm]
Xrefs:
links:
FMA:84583
Synonyms: "smooth muscle fiber of prostate" EXACT [FMA:84583]


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000192(smooth muscle cell)
part_of:UBERON:0002367(prostate gland)



Children


derives from:FF:0000183 (human smooth muscle cell of prostate sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:1000487 (smooth muscle cell of prostate), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.74e-50FFCP PHASE2:Hg19::chr5:1042544..1042553,+#_549d13e449b81c799a709395247b88a8p@chr5:1042544..1042553, +
2.74e-50FFCP PHASE1:Hg19::chr5:1042544..1042553,+#_549d13e449b81c799a709395247b88a8p@chr5:1042544..1042553, +
4.52e-50FFCP PHASE2:Hg19::chr5:1043105..1043109,+#_73b7c0a3e31503b3fd9b4e2edacb4125p@chr5:1043105..1043109, +
4.52e-50FFCP PHASE1:Hg19::chr5:1043105..1043109,+#_73b7c0a3e31503b3fd9b4e2edacb4125p@chr5:1043105..1043109, +
3.61e-34FFCP PHASE1:Hg19::chr5:1044530..1044539,+#_fb042cf4560748050e4b0490b23a7e93p@chr5:1044530..1044539, +
3.61e-34FFCP PHASE1:Hg19::chr5:1045108..1045137,+#_fb042cf4560748050e4b0490b23a7e93p@chr5:1045108..1045137, +
3.61e-34FFCP PHASE2:Hg19::chr5:1044530..1044539,+#_fb042cf4560748050e4b0490b23a7e93p@chr5:1044530..1044539, +
3.61e-34FFCP PHASE2:Hg19::chr5:1045108..1045137,+#_fb042cf4560748050e4b0490b23a7e93p@chr5:1045108..1045137, +
7.05e-34FFCP PHASE2:Hg19::chr5:1049320..1049333,+#_67ef2221eee01603e7786033eb4201aap@chr5:1049320..1049333, +
7.05e-34FFCP PHASE1:Hg19::chr5:1049320..1049333,+#_67ef2221eee01603e7786033eb4201aap@chr5:1049320..1049333, +
3.46e-31FFCP PHASE1:Hg19::chr1:192735472..192735488,-#_f60beab36058aee94ba162429a76fac7p@chr1:192735472..192735488, -
3.46e-31FFCP PHASE2:Hg19::chr1:192735472..192735488,-#_f60beab36058aee94ba162429a76fac7p@chr1:192735472..192735488, -
1.92e-29FFCP PHASE2:Hg19::chr16:86498111..86498151,-#_03fcfb6df34832159b6c1e0e7d9ca271p@chr16:86498111..86498151, -
1.92e-29FFCP PHASE1:Hg19::chr16:86498111..86498151,-#_03fcfb6df34832159b6c1e0e7d9ca271p@chr16:86498111..86498151, -
2.74e-27FFCP PHASE1:Hg19::chr16:86547373..86547391,+#_b4cd42b02d7d7c73952ee32e47493d2cp@chr16:86547373..86547391, +
2.74e-27FFCP PHASE2:Hg19::chr16:86547373..86547391,+#_b4cd42b02d7d7c73952ee32e47493d2cp@chr16:86547373..86547391, +
7.14e-26FFCP PHASE1:Hg19::chr13:24153617..24153622,+#_2076671e2b0226be109ea8a64faf1252p11@TNFRSF19
7.14e-26FFCP PHASE2:Hg19::chr13:24153617..24153622,+#_2076671e2b0226be109ea8a64faf1252p11@TNFRSF19
2.97e-24FFCP PHASE2:Hg19::chr7:136554042..136554052,+#_ecc3100b167744c2b73a3ad747296e31p8@CHRM2
2.97e-24FFCP PHASE1:Hg19::chr7:136554042..136554052,+#_ecc3100b167744c2b73a3ad747296e31p8@CHRM2
1.2e-22FFCP PHASE2:Hg19::chr5:92919596..92919609,+#_7d590d2952bb699b0ca71f37e501f77cp@chr5:92919596..92919609, +
1.2e-22FFCP PHASE1:Hg19::chr5:92919596..92919609,+#_7d590d2952bb699b0ca71f37e501f77cp@chr5:92919596..92919609, +
6.69e-22FFCP PHASE1:Hg19::chr16:86498340..86498362,-#_aad13d9328736285f3c0ab5997bdd4c8p@chr16:86498340..86498362, -
6.69e-22FFCP PHASE2:Hg19::chr16:86498340..86498362,-#_aad13d9328736285f3c0ab5997bdd4c8p@chr16:86498340..86498362, -
1.26e-21FFCP PHASE1:Hg19::chr3:187009798..187009812,-#_fc44ba5b20cdd437d5fcaaa222abd8f3p5@MASP1
1.26e-21FFCP PHASE2:Hg19::chr3:187009798..187009812,-#_fc44ba5b20cdd437d5fcaaa222abd8f3p5@MASP1
3.81e-21FFCP PHASE1:Hg19::chr8:102344320..102344363,-#_26ffa9cb64bf5b21cf7b69f458e7bb75p@chr8:102344320..102344363, -
3.81e-21FFCP PHASE2:Hg19::chr15:51669607..51669617,+#_26ffa9cb64bf5b21cf7b69f458e7bb75p6@GLDN
3.81e-21FFCP PHASE1:Hg19::chr15:51669607..51669617,+#_26ffa9cb64bf5b21cf7b69f458e7bb75p6@GLDN
3.81e-21FFCP PHASE2:Hg19::chr8:102344320..102344363,-#_26ffa9cb64bf5b21cf7b69f458e7bb75p@chr8:102344320..102344363, -
4.66e-21FFCP PHASE1:Hg19::chr10:28033817..28033825,+#_5ce9849f58f41391f1be08dd5a7db84fp2@ENST00000419777
4.66e-21FFCP PHASE2:Hg19::chr10:28033817..28033825,+#_5ce9849f58f41391f1be08dd5a7db84fp2@ENST00000419777
7.43e-18FFCP PHASE2:Hg19::chr19:1038801..1038822,+#_68bd64fb4f8c358278d866c5e9fa78dap@chr19:1038801..1038822, +
7.43e-18FFCP PHASE1:Hg19::chr19:1038801..1038822,+#_68bd64fb4f8c358278d866c5e9fa78dap@chr19:1038801..1038822, +
9.07e-18FFCP PHASE2:Hg19::chr3:138666329..138666339,-#_fa3f2fec4748756b66d9a6bbae86124dp10@FOXL2
9.07e-18FFCP PHASE2:Hg19::chr5:134369177..134369188,+#_fa3f2fec4748756b66d9a6bbae86124dp2@ENST00000505828
9.07e-18FFCP PHASE2:Hg19::chr5:134369500..134369515,-#_fa3f2fec4748756b66d9a6bbae86124dp13@PITX1
9.07e-18FFCP PHASE1:Hg19::chr3:138666329..138666339,-#_fa3f2fec4748756b66d9a6bbae86124dp10@FOXL2
9.07e-18FFCP PHASE1:Hg19::chr5:134369177..134369188,+#_fa3f2fec4748756b66d9a6bbae86124dp2@ENST00000505828
9.07e-18FFCP PHASE1:Hg19::chr5:134369500..134369515,-#_fa3f2fec4748756b66d9a6bbae86124dp13@PITX1
1.27e-17FFCP PHASE2:Hg19::chr10:28035746..28035751,-#_090ef2f1b668303e2f3ec7e6301dacd4p@chr10:28035746..28035751, -
1.27e-17FFCP PHASE1:Hg19::chr10:28035746..28035751,-#_090ef2f1b668303e2f3ec7e6301dacd4p@chr10:28035746..28035751, -
1.34e-17FFCP PHASE2:Hg19::chr5:92922801..92922812,+#_9620be041a72f63fbcb5b1ec08678638p20@NR2F1
1.34e-17FFCP PHASE1:Hg19::chr5:92922801..92922812,+#_9620be041a72f63fbcb5b1ec08678638p20@NR2F1
3.98e-17FFCP PHASE1:Hg19::chr17:59485435..59485452,+#_0296559007cfa7dd50a69705f98ad910p@chr17:59485435..59485452, +
3.98e-17FFCP PHASE2:Hg19::chr17:59485435..59485452,+#_0296559007cfa7dd50a69705f98ad910p@chr17:59485435..59485452, +
3.44e-16FFCP PHASE1:Hg19::chr4:120549834..120549846,-#_ef2ea7fb3ec031470b3531710e5527efp15@PDE5A
3.44e-16FFCP PHASE2:Hg19::chr4:120549834..120549846,-#_ef2ea7fb3ec031470b3531710e5527efp15@PDE5A
1.15e-15FFCP PHASE2:Hg19::chr2:238283417..238283428,-#_5bdefcd04e9ebbd53c445f67e6b9841ap@chr2:238283417..238283428, -
1.15e-15FFCP PHASE1:Hg19::chr2:238283417..238283428,-#_5bdefcd04e9ebbd53c445f67e6b9841ap@chr2:238283417..238283428, -
1.78e-15FFCP PHASE2:Hg19::chr4:120549931..120549938,-#_31d331e6b9778505f38471b692aace43p21@PDE5A
1.78e-15FFCP PHASE1:Hg19::chr4:120549931..120549938,-#_31d331e6b9778505f38471b692aace43p21@PDE5A
2.05e-15FFCP PHASE2:Hg19::chr1:75180314..75180323,-#_734b3e9bd325d3ae597a28fe55e64280p@chr1:75180314..75180323, -
2.05e-15FFCP PHASE1:Hg19::chr1:75180314..75180323,-#_734b3e9bd325d3ae597a28fe55e64280p@chr1:75180314..75180323, -
2.74e-15FFCP PHASE2:Hg19::chr4:148885940..148885946,+#_955b305d7c1b489e641fc66697a77e6dp@chr4:148885940..148885946, +
2.74e-15FFCP PHASE2:Hg19::chr9:72673..72678,+#_955b305d7c1b489e641fc66697a77e6dp1@uc003zfx.2
2.74e-15FFCP PHASE1:Hg19::chr9:72673..72678,+#_955b305d7c1b489e641fc66697a77e6dp1@uc003zfx.2
2.74e-15FFCP PHASE1:Hg19::chr4:148885940..148885946,+#_955b305d7c1b489e641fc66697a77e6dp@chr4:148885940..148885946, +
1.68e-14FFCP PHASE1:Hg19::chr21:28338948..28338976,-#_f12c308f9afbd3b7024955009a766d68p10@ADAMTS5
1.68e-14FFCP PHASE2:Hg19::chr21:28338948..28338976,-#_f12c308f9afbd3b7024955009a766d68p10@ADAMTS5
4.77e-14FFCP PHASE1:Hg19::chr5:34915414..34915420,+#_0b9fd9c1b378b2e530db1267fe560a00p4@BRIX1
4.77e-14FFCP PHASE2:Hg19::chr5:34915414..34915420,+#_0b9fd9c1b378b2e530db1267fe560a00p4@BRIX1
6.43e-14FFCP PHASE2:Hg19::chr5:1043617..1043642,+#_97b3c38e596bd9b3ee6c1971ba8b397cp@chr5:1043617..1043642, +
6.43e-14FFCP PHASE1:Hg19::chr5:1043617..1043642,+#_97b3c38e596bd9b3ee6c1971ba8b397cp@chr5:1043617..1043642, +
1.07e-13FFCP PHASE2:Hg19::chr14:33088589..33088594,+#_52d822b8ea284a362b4774ef5ab13357p@chr14:33088589..33088594, +
1.07e-13FFCP PHASE2:Hg19::chr3:138665702..138665729,-#_52d822b8ea284a362b4774ef5ab13357p7@FOXL2
1.07e-13FFCP PHASE1:Hg19::chr14:33088589..33088594,+#_52d822b8ea284a362b4774ef5ab13357p@chr14:33088589..33088594, +
1.07e-13FFCP PHASE1:Hg19::chr3:138665702..138665729,-#_52d822b8ea284a362b4774ef5ab13357p7@FOXL2
2.2e-13FFCP PHASE2:Hg19::chr9:101832450..101832468,+#_7deb2c315a0b3adfac826115bffc2109p@chr9:101832450..101832468, +
2.2e-13FFCP PHASE1:Hg19::chr9:101832450..101832468,+#_7deb2c315a0b3adfac826115bffc2109p@chr9:101832450..101832468, +
2.32e-12FFCP PHASE1:Hg19::chr1:110466067..110466076,+#_5ebbb1c4f9639b6922be6cc3a0ab3dd8p@chr1:110466067..110466076, +
2.32e-12FFCP PHASE2:Hg19::chr1:110466067..110466076,+#_5ebbb1c4f9639b6922be6cc3a0ab3dd8p@chr1:110466067..110466076, +
2.68e-12FFCP PHASE1:Hg19::chr2:134024392..134024406,-#_54d16a6cc2822d8c1976735b16f29840p@chr2:134024392..134024406, -
2.68e-12FFCP PHASE2:Hg19::chr2:134024392..134024406,-#_54d16a6cc2822d8c1976735b16f29840p@chr2:134024392..134024406, -
2.7e-12FFCP PHASE2:Hg19::chr3:170150765..170150776,+#_5660715a5a60517be8b96d4c43d842a6p14@CLDN11
2.7e-12FFCP PHASE1:Hg19::chr3:170150765..170150776,+#_5660715a5a60517be8b96d4c43d842a6p14@CLDN11
2.79e-12FFCP PHASE1:Hg19::chr11:9797253..9797262,+#_dca05f5fff9aab32c05abf965ff5ec27p2@ENST00000534671
2.79e-12FFCP PHASE2:Hg19::chr11:9797253..9797262,+#_dca05f5fff9aab32c05abf965ff5ec27p2@ENST00000534671
3.24e-12FFCP PHASE2:Hg19::chr10:127569398..127569410,-#_1818d09524a31f63d23acd8564c92ca6p5@DHX32
3.24e-12FFCP PHASE1:Hg19::chr10:127569398..127569410,-#_1818d09524a31f63d23acd8564c92ca6p5@DHX32
5.1e-12FFCP PHASE1:Hg19::chr2:217559893..217559904,-#_0330cf7dc6cdb63a723f882266353c49p39@IGFBP5
5.1e-12FFCP PHASE2:Hg19::chr2:217559893..217559904,-#_0330cf7dc6cdb63a723f882266353c49p39@IGFBP5
6.76e-12FFCP PHASE2:Hg19::chr2:26972981..26973006,+#_dfd14f9eaf284e26339e97509e1fd11ap@chr2:26972981..26973006, +
6.76e-12FFCP PHASE1:Hg19::chr2:26972981..26973006,+#_dfd14f9eaf284e26339e97509e1fd11ap@chr2:26972981..26973006, +
6.89e-12FFCP PHASE2:Hg19::chr9:101706279..101706284,+#_e99653b30b3b754c26a188331de2a14fp13@COL15A1
6.89e-12FFCP PHASE1:Hg19::chr9:101706279..101706284,+#_e99653b30b3b754c26a188331de2a14fp13@COL15A1
8.61e-12FFCP PHASE2:Hg19::chr1:21766691..21766715,+#_0de2af2cd47bb14498a9f963bb99dc89p3@NBPF3
8.61e-12FFCP PHASE1:Hg19::chr1:21766691..21766715,+#_0de2af2cd47bb14498a9f963bb99dc89p3@NBPF3
1.82e-11FFCP PHASE1:Hg19::chr5:1041879..1041917,+#_9b8531bf9fb8561a4958766fdf4ba643p@chr5:1041879..1041917, +
1.82e-11FFCP PHASE2:Hg19::chr5:1041879..1041917,+#_9b8531bf9fb8561a4958766fdf4ba643p@chr5:1041879..1041917, +
2.02e-11FFCP PHASE1:Hg19::chr3:170150640..170150647,+#_0e8a0abb9bbbf42a151e0c11d54a646dp@chr3:170150640..170150647, +
2.02e-11FFCP PHASE2:Hg19::chr3:170150640..170150647,+#_0e8a0abb9bbbf42a151e0c11d54a646dp@chr3:170150640..170150647, +
2.23e-11FFCP PHASE1:Hg19::chr5:134367045..134367056,-#_8cf9919b9fccde8b697113e0d5b6a76cp@chr5:134367045..134367056, -
2.23e-11FFCP PHASE2:Hg19::chr5:134367045..134367056,-#_8cf9919b9fccde8b697113e0d5b6a76cp@chr5:134367045..134367056, -
2.34e-11FFCP PHASE2:Hg19::chr16:86256667..86256687,-#_397d14731bf8aafb6e7705f6b4ea85d1p@chr16:86256667..86256687, -
2.34e-11FFCP PHASE1:Hg19::chr16:86256667..86256687,-#_397d14731bf8aafb6e7705f6b4ea85d1p@chr16:86256667..86256687, -
2.46e-11FFCP PHASE2:Hg19::chr16:86542381..86542392,-#_c28988f041f5e287f8da8a5a03ddad70p1@ENST00000499071
2.46e-11FFCP PHASE1:Hg19::chr16:86542381..86542392,-#_c28988f041f5e287f8da8a5a03ddad70p1@ENST00000499071
2.73e-11FFCP PHASE2:Hg19::chr9:132390755..132390781,+#_1ba768eac4a928615e1ffcd608bd0146p7@METTL11A
2.73e-11FFCP PHASE1:Hg19::chr9:132390755..132390781,+#_1ba768eac4a928615e1ffcd608bd0146p7@METTL11A

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:1000487&oldid=3275583"