FFCP PHASE1:Hg19::chr17:74639886..74639899,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55808 | |EntrezGene=55808 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23614 | |HGNC=23614 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NSC7,Q9NXQ7 | |UniProt=Q9NSC7,Q9NXQ7 | ||
|association_with_transcript=0bp_to_ENST00000156626,NM_018414,uc002jsh.2,uc002jsi.2,uc002jsj.2_5end | |association_with_transcript=0bp_to_ENST00000156626,NM_018414,uc002jsh.2,uc002jsi.2,uc002jsj.2_5end | ||
|cluster_id=chr17:74639886..74639899,- | |||
|coexpression_cluster_id=C190 | |||
|description=CAGE_peak_3_at_ST6GALNAC1_5end | |description=CAGE_peak_3_at_ST6GALNAC1_5end | ||
|id=chr17:74639886..74639899,- | |id=chr17:74639886..74639899,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0001045;6.16e-09;1!UBERON:0006242;1.13e-08;1!UBERON:0006595;7.04e-08;86 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.01e-24!115;UBERON:0005409!1.06e-10!35;UBERON:0004921!1.38e-09!129;UBERON:0004185!1.38e-09!129;UBERON:0004119!1.35e-08!169;UBERON:0000925!1.35e-08!169;UBERON:0006595!1.35e-08!169;UBERON:0001007!4.90e-08!155;UBERON:0001555!4.90e-08!155;UBERON:0007026!4.90e-08!155;UBERON:0000160!3.22e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;2.14e-26;33!UBERON:0000160;2.37e-26;17!UBERON:0005409;1.11e-25;22!UBERON:0000059;1.76e-17;11!UBERON:0003127;3.57e-16;2!UBERON:0006562;8.82e-16;2!UBERON:0002108;1.74e-14;4!UBERON:0001155;4.89e-14;9!UBERON:0001555;7.23e-11;54!UBERON:0001154;6.16e-09;1!UBERON:0001153;6.16e-09;1!UBERON:0009854;6.16e-09;1!UBERON:0002372;8.05e-09;1!UBERON:0001961;8.05e-09;1!UBERON:0001744;8.05e-09;1!UBERON:0001042;8.05e-09;1!UBERON:0001735;8.05e-09;1!UBERON:0002171;1.78e-08;1!UBERON:0006518;1.78e-08;1!UBERON:0008949;1.78e-08;1!UBERON:0000101;1.78e-08;1!UBERON:0002167;1.78e-08;1!UBERON:0004907;5.09e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.33e-26,17;UBERON:0005409,1.43e-22,25;UBERON:0000059,1.76e-17,11;UBERON:0003127,3.18e-16,2;UBERON:0004921,4.62e-15,118;UBERON:0002108,1.70e-14,4;UBERON:0001155,4.89e-14,9;UBERON:0001007,2.73e-13,145;UBERON:0001555,2.73e-13,145;UBERON:0007026,2.73e-13,145;UBERON:0004119,9.83e-12,160;UBERON:0000925,9.83e-12,160;UBERON:0006595,9.83e-12,160;UBERON:0001154,6.16e-09,1;UBERON:0001153,6.16e-09,1;UBERON:0001045,6.16e-09,1;UBERON:0002372,9.02e-09,1;UBERON:0001961,9.02e-09,1;UBERON:0001744,9.02e-09,1;UBERON:0001735,9.02e-09,1;UBERON:0007023,1.15e-08,114;UBERON:0002171,1.78e-08,1;UBERON:0006518,1.78e-08,1;UBERON:0008949,1.78e-08,1;UBERON:0000101,1.78e-08,1;UBERON:0002167,1.78e-08,1;UBERON:0011216,2.39e-07,223;UBERON:0004907,5.09e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0.30120591877825,0.369754010166788,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0.822405995998037,0,0,0,0,0.334231370655521,0,0.443067789167242,0,0.25618263945135,0,0,0,0.289803085735052,0.14828656316206,0,0,0,0,0.68725489096526,0.759059076058509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.491953754172454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0.384380134730212,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384888450902048,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23087398947712,0,0,0,2.99424864653152,0,0,0.222886768554957,0,0,0,0,0,0,0,0,0,1.79323189425963,6.63081397274754,0,0,0,0,0,0.179021174675609,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,1.137934482855,0.254253650292766,0,0,0,0,0,0,0,0,0.295547618953547,0,0,0.139423744278603,2.46240827212151,0,0,0.0897576444097721,0.54323685961004,0,0,0,0,0,0.166211681900156,0.225595660617181,0.392125068635479,0.167821586975843,0,0,0,0.326465616318295,0,0,44.7867868985327,17.1607675136478,69.6574365224333,0,0,0,0.202203398942031,0,0,0,0.391329237864179,0,0,7.25944296291983,0,0,0,0,0,0,0,0,0,0,0.173559738335131,0.489961987071888,0,0,0,0,0.146178634172371,0,0.872901148395775,0,0,0,0,0.126621591911757,0.195551382734803,0,2.77488893161158,0,0.576361668616424,0,0,0,0,0,0,0,0,0,0,0.410716136675979,0,0,0,0,0.229160424011684,0.717873024576814,0.399358000997982,0.429226048136571,0,0.0671834724867263,0,0,0,0,0,0.196854963029498,0,0,0.136203406111576,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06720276974141,0,0,0,0,0,0,0.171086837884329,0,1.9221734262185,2.04365596629566,1.65695622138878,0.992332043623902,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.248385611765534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0,0,0.138314504928436,0,0,0,0,0.183428598521679,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.202612753855184,0,0,0.0634158101939068,0,0,0.496211178389294,0,2.04419884223352,0,0.336283722218824,0,0,0.0887023701626388,0,0,0.271878931907327,0.263091094251396,0,0,0.706437835654626,0,0.280272163313789,9.13158720509496,0,0,0,0,0.929931402945002,0,0,0,0,0,4.30227358820278,0,0,0,0,0,0,0,0.490751168076215,0,0,0,0,0,0,0,0,0,0,0,15.6663540959128,13.3321331907414,0,0,0,0,0.297046400327086,0,0,0.0939839179798536,0.773494655682926,0,1.96409332466223,0,0,3.65168194123259,0.458729283404541,0,0,0.407948941145488,0.436350690340377,7.93540260773101,0,0,0,0,0,0,0.203977659483963,0,0.0918948995348449,0,0.227336094654718,0.267964130156178,0,0.103432995861895,3.19850972851471,0.476128862927481,0.0645889098360061,0,0,0,0,0.217716747896961,0,3.03084238565644,11.6189972736136,3.65926392200615,0,0,0,0,0,0.366724332548599,0.406896178315738,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0.30120591877825,0.369754010166788,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0.822405995998037,0,0,0,0,0.334231370655521,0,0.443067789167242,0,0.25618263945135,0,0,0,0.289803085735052,0.14828656316206,0,0,0,0,0.68725489096526,0.759059076058509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.491953754172454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0.384380134730212,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384888450902048,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23087398947712,0,0,0,2.99424864653152,0,0,0.222886768554957,0,0,0,0,0,0,0,0,0,1.79323189425963,6.63081397274754,0,0,0,0,0,0.179021174675609,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,1.137934482855,0.254253650292766,0,0,0,0,0,0,0,0,0.295547618953547,0,0,0.139423744278603,2.46240827212151,0,0,0.0897576444097721,0.54323685961004,0,0,0,0,0,0.166211681900156,0.225595660617181,0.392125068635479,0.167821586975843,0,0,0,0.326465616318295,0,0,44.7867868985327,17.1607675136478,69.6574365224333,0,0,0,0.202203398942031,0,0,0,0.391329237864179,0,0,7.25944296291983,0,0,0,0,0,0,0,0,0,0,0.173559738335131,0.489961987071888,0,0,0,0,0.146178634172371,0,0.872901148395775,0,0,0,0,0.126621591911757,0.195551382734803,0,2.77488893161158,0,0.576361668616424,0,0,0,0,0,0,0,0,0,0,0.410716136675979,0,0,0,0,0.229160424011684,0.717873024576814,0.399358000997982,0.429226048136571,0,0.0671834724867263,0,0,0,0,0,0.196854963029498,0,0,0.136203406111576,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06720276974141,0,0,0,0,0,0,0.171086837884329,0,1.9221734262185,2.04365596629566,1.65695622138878,0.992332043623902,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.248385611765534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0,0,0.138314504928436,0,0,0,0,0.183428598521679,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.202612753855184,0,0,0.0634158101939068,0,0,0.496211178389294,0,2.04419884223352,0,0.336283722218824,0,0,0.0887023701626388,0,0,0.271878931907327,0.263091094251396,0,0,0.706437835654626,0,0.280272163313789,9.13158720509496,0,0,0,0,0.929931402945002,0,0,0,0,0,4.30227358820278,0,0,0,0,0,0,0,0.490751168076215,0,0,0,0,0,0,0,0,0,0,0,15.6663540959128,13.3321331907414,0,0,0,0,0.297046400327086,0,0,0.0939839179798536,0.773494655682926,0,1.96409332466223,0,0,3.65168194123259,0.458729283404541,0,0,0.407948941145488,0.436350690340377,7.93540260773101,0,0,0,0,0,0,0.203977659483963,0,0.0918948995348449,0,0.227336094654718,0.267964130156178,0,0.103432995861895,3.19850972851471,0.476128862927481,0.0645889098360061,0,0,0,0,0.217716747896961,0,3.03084238565644,11.6189972736136,3.65926392200615,0,0,0,0,0,0.366724332548599,0.406896178315738,0,0,0 | ||
|short_description=p3@ST6GALNAC1 | |short_description=p3@ST6GALNAC1 | ||
}} | }} |
Latest revision as of 16:24, 17 September 2015
Short description: | p3@ST6GALNAC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ST6GALNAC1_5end |
Coexpression cluster: | C190_colon_small_rectum_duodenum_appendix_temporal_oral |
Association with transcript: | 0bp_to_ENST00000156626, NM_018414, uc002jsh.2, uc002jsi.2, uc002jsj.2_5end |
EntrezGene: | ST6GALNAC1 |
HGNC: | 23614 |
UniProt: | Q9NSC7Q9NXQ7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestine | 2.33e-26 | 17 |
gastrointestinal system | 1.43e-22 | 25 |
large intestine | 1.76e-17 | 11 |
open tracheal system trachea | 3.18e-16 | 2 |
subdivision of digestive tract | 4.62e-15 | 118 |
small intestine | 1.70e-14 | 4 |
colon | 4.89e-14 | 9 |
digestive system | 2.73e-13 | 145 |
digestive tract | 2.73e-13 | 145 |
primitive gut | 2.73e-13 | 145 |
endoderm-derived structure | 9.83e-12 | 160 |
endoderm | 9.83e-12 | 160 |
presumptive endoderm | 9.83e-12 | 160 |
vermiform appendix | 6.16e-09 | 1 |
caecum | 6.16e-09 | 1 |
midgut | 6.16e-09 | 1 |
tonsil | 9.02e-09 | 1 |
mucosa-associated lymphoid tissue | 9.02e-09 | 1 |
lymphoid tissue | 9.02e-09 | 1 |
tonsillar ring | 9.02e-09 | 1 |
adult organism | 1.15e-08 | 114 |
lower lobe of right lung | 1.78e-08 | 1 |
right lung lobe | 1.78e-08 | 1 |
lower lobe of lung | 1.78e-08 | 1 |
lobe of lung | 1.78e-08 | 1 |
right lung | 1.78e-08 | 1 |
organ system subdivision | 2.39e-07 | 223 |
lower digestive tract | 5.09e-07 | 5 |