FFCP PHASE1:Hg19::chr13:38153485..38153498,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:38153485..38153498,- | |||
|coexpression_cluster_id=C349 | |||
|description=CAGE_peak_at_chr13:38153485..38153498,- | |description=CAGE_peak_at_chr13:38153485..38153498,- | ||
|id=chr13:38153485..38153498,- | |id=chr13:38153485..38153498,- | ||
|ontology_enrichment_celltype=CL:0000055!1.84e-20!180;CL:0000057!4.04e-15!75;CL:0002334!6.58e-12!12;CL:0000680!2.29e-09!57;CL:0000056!2.29e-09!57;CL:0000355!2.29e-09!57;CL:0000187!1.04e-07!54;CL:0000048!1.82e-07!430;CL:0000723!2.51e-07!436;CL:0002570!5.26e-07!8 | |ontology_enrichment_celltype=CL:0000055!1.84e-20!180;CL:0000057!4.04e-15!75;CL:0002334!6.58e-12!12;CL:0000680!2.29e-09!57;CL:0000056!2.29e-09!57;CL:0000355!2.29e-09!57;CL:0000187!1.04e-07!54;CL:0000048!1.82e-07!430;CL:0000723!2.51e-07!436;CL:0002570!5.26e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0002334;7.76e-20;12!CL:1000306;3.52e-10;4!CL:0002547;3.52e-10;4!CL:0002580;7.73e-09;3!CL:0000135;1.07e-08;3!CL:0000388;1.07e-08;3!CL:0002579;1.14e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002334,9.94e-20,12;CL:0000057,2.97e-14,76;CL:1000306,2.57e-10,4;CL:0002547,2.57e-10,4;CL:0002580,6.64e-09,3;CL:0000135,7.56e-09,3;CL:0000388,7.56e-09,3;CL:0002579,1.73e-08,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!1.77e-09!14 | |ontology_enrichment_disease=DOID:2394!1.77e-09!14 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001134!4.60e-10!61;UBERON:0002036!4.60e-10!61;UBERON:0003082!4.60e-10!61;UBERON:0002385!1.84e-09!63;UBERON:0001015!1.84e-09!63;UBERON:0000383!1.84e-09!63;UBERON:0000914!2.00e-09!83;UBERON:0002329!2.00e-09!83;UBERON:0003077!2.00e-09!83;UBERON:0003059!2.00e-09!83;UBERON:0007282!2.00e-09!83;UBERON:0009618!2.00e-09!83;UBERON:0007285!2.00e-09!83;UBERON:0004872!4.88e-09!84;UBERON:0004290!1.17e-07!70;UBERON:0000490!1.96e-07!138;UBERON:0000948!5.95e-07!24;UBERON:0005498!5.95e-07!24;UBERON:0004140!5.95e-07!24;UBERON:0009881!5.95e-07!24;UBERON:0004141!5.95e-07!24;UBERON:0003084!5.95e-07!24;UBERON:0007005!5.95e-07!24;UBERON:0004139!5.95e-07!24;UBERON:0004291!5.95e-07!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0004797;3.52e-10;4!UBERON:0000415;3.52e-10;4!UBERON:0007240;3.52e-10;4!UBERON:0005742;3.52e-10;4!UBERON:0005734;3.52e-10;4!UBERON:0004664;3.52e-10;4!UBERON:0004663;3.52e-10;4!UBERON:0007846;1.07e-08;3!UBERON:0000043;1.07e-08;3!UBERON:0007845;1.07e-08;3!UBERON:0001443;1.18e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000415,2.57e-10,4;UBERON:0007240,2.57e-10,4;UBERON:0005742,2.57e-10,4;UBERON:0005734,2.57e-10,4;UBERON:0004664,2.57e-10,4;UBERON:0004663,2.57e-10,4;UBERON:0007846,7.56e-09,3;UBERON:0000043,7.56e-09,3;UBERON:0007845,7.56e-09,3;UBERON:0001443,1.29e-07,11 | |||
|phase1_expression=1.09007027562334,1.07050261945492,0.845726424575827,0,0,0,0,0,0,0,0,0,0,0.247532705920093,0,0,0.602694528023977,0,0.975865597581014,0,0,0,0.286235987131057,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.02420515822182,0.511450247374121,0,0.50133791063589,0.724232594804119,0,1.94653948121054,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.67799774483962,0.275118041940067,0,0,0,0,0,0,0,0,2.43042584364528,0.0892997282840798,0,0,0,0,0,0,0,0,16.8970463576408,3.67228483827281,1.98613771219828,1.14734648299525,3.54668382198357,0,2.1349799145941,4.68668341992604,0.311211035399766,1.34710672069688,0.653847612453835,0,2.88087962239999,0,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0.505008341862199,0.125118519871964,0,0.438977620880838,1.83892677479412,0.150238058906597,7.48652408856139,0,2.34913127700424,0.635795703478686,0,0.103052529238439,0.772921620136887,0.930584281657949,0.168776332241266,0,0.504867548488229,0.828449087780694,0,0,0.10075209822764,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0.329250856225877,0,0,0,0,0,0,0,0.469634776943287,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29271715757778,0,4.22651376278,0.797814349754612,0,0,0,0,1.28680194292333,0,0,0.65147236858747,0.710783897485092,0,16.2777263612176,6.10073421020206,23.1937339542372,0,0,0,4.79249710983165,0,0,3.18518874668674,0.410952645100767,0.716243852959582,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,8.7347761842939,9.45673640624957,1.89242898040722,0.35142424497814,0,2.27407504055985,1.03473071292505,3.32112799267718,0,0.260650843404249,0,0,0,0,0,0,0,0,4.96215615637554,2.76231551918512,9.5424432107245,5.25370511948374,1.02341449813341,13.511729376063,0,2.00472601943452,4.79416658345443,1.23190734020714,1.55776328755086,0.232420756919918,0,0.601519410909855,0,2.18147451512753,1.82091168006717,0.917870904715969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0,0,0,0,0,3.21367859688319,1.06337790121334,0,0,0,0.429680979473094,1.16013355131383,0.426133137080504,3.65031346151623,1.32227932288782,0.768760269460425,0,0.10115778085555,0,0.31481234683064,0,0.308033580176089,0,0,1.29726953372744,0.286249773483982,0,0.316379424718726,0.571890581771475,0,0.42793898803392,0,0,0.539617372749944,3.29444435683266,0.589062011728432,0,1.58510321173008,0,0,0.731140468893853,0,0.136499911407986,12.7264888758341,0,0,2.65375590096488,0,0,0,0.405820753925408,0.30982349809975,0,0.143411352204052,0,0.7133421029625,0,0.211107635297664,0,0,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,4.97663340258892,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0.455768223388005,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60515529459758,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271808412147228,0.313808538937,0,0,0,0,0,0,0,0.837847203816763,0.229160424011684,0,0,0,0,0.0671834724867263,1.44119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.298509605773748,0.934853239388898,0.554805861502613,0,1.0062716070103,0,0.228840068396924,0.151230923763239,0,0.147855149989634,0.159296767163702,0.449803112163605,0.465788870628778,1.24411862352257,1.06336685823198,3.1304703708704,0.300515217994437,11.8049615772327,0.406870733204662,0.545545977607678,0.859284456339908,0,1.99047944349308,0,8.92828833475262,7.40848875285022,0,0,0,0,7.48129554190499,0,1.22368352253234,0.179088841081487,0,0.877136198314828,0,0,0,0,0,0,0,0,0,0,0.982829546539238,0.491545817507439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.81605220784102,0,0,7.75887076119505,0,0.0642292250964595,0,0.159633859057151,0,0,0,0,0,0,0,0,0,1.52552838186867,0,0,0,0.20170506870352,0,0,1.47394725759087,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0.685952037749674,0,0,0,0,0.078493092850514,0,0,1.82631744101899,0,0,0,0,3.13851848493938,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0,0,0,0,0,3.4794432940146,0.485710993059139,0,0,0,0,0,0,0,0.655678681511872,0,0,0,0,0,0,7.13693881688831,0,0,0,0,0,0,0,0,0,0,0,0,1.0580536810308,14.8798007266701,1.84870251452567,6.48939843185684,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,1.1903221573187,0,0,0.224263725161227,0.0636471582781649,0,0,0,0,0.0717222053926763,0.665320713092027,0,0,0,0,0,0,2.03448089157869,0,0,0 | |phase1_expression=1.09007027562334,1.07050261945492,0.845726424575827,0,0,0,0,0,0,0,0,0,0,0.247532705920093,0,0,0.602694528023977,0,0.975865597581014,0,0,0,0.286235987131057,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.02420515822182,0.511450247374121,0,0.50133791063589,0.724232594804119,0,1.94653948121054,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.67799774483962,0.275118041940067,0,0,0,0,0,0,0,0,2.43042584364528,0.0892997282840798,0,0,0,0,0,0,0,0,16.8970463576408,3.67228483827281,1.98613771219828,1.14734648299525,3.54668382198357,0,2.1349799145941,4.68668341992604,0.311211035399766,1.34710672069688,0.653847612453835,0,2.88087962239999,0,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0.505008341862199,0.125118519871964,0,0.438977620880838,1.83892677479412,0.150238058906597,7.48652408856139,0,2.34913127700424,0.635795703478686,0,0.103052529238439,0.772921620136887,0.930584281657949,0.168776332241266,0,0.504867548488229,0.828449087780694,0,0,0.10075209822764,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0.329250856225877,0,0,0,0,0,0,0,0.469634776943287,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29271715757778,0,4.22651376278,0.797814349754612,0,0,0,0,1.28680194292333,0,0,0.65147236858747,0.710783897485092,0,16.2777263612176,6.10073421020206,23.1937339542372,0,0,0,4.79249710983165,0,0,3.18518874668674,0.410952645100767,0.716243852959582,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,8.7347761842939,9.45673640624957,1.89242898040722,0.35142424497814,0,2.27407504055985,1.03473071292505,3.32112799267718,0,0.260650843404249,0,0,0,0,0,0,0,0,4.96215615637554,2.76231551918512,9.5424432107245,5.25370511948374,1.02341449813341,13.511729376063,0,2.00472601943452,4.79416658345443,1.23190734020714,1.55776328755086,0.232420756919918,0,0.601519410909855,0,2.18147451512753,1.82091168006717,0.917870904715969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0,0,0,0,0,3.21367859688319,1.06337790121334,0,0,0,0.429680979473094,1.16013355131383,0.426133137080504,3.65031346151623,1.32227932288782,0.768760269460425,0,0.10115778085555,0,0.31481234683064,0,0.308033580176089,0,0,1.29726953372744,0.286249773483982,0,0.316379424718726,0.571890581771475,0,0.42793898803392,0,0,0.539617372749944,3.29444435683266,0.589062011728432,0,1.58510321173008,0,0,0.731140468893853,0,0.136499911407986,12.7264888758341,0,0,2.65375590096488,0,0,0,0.405820753925408,0.30982349809975,0,0.143411352204052,0,0.7133421029625,0,0.211107635297664,0,0,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,4.97663340258892,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0.455768223388005,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60515529459758,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271808412147228,0.313808538937,0,0,0,0,0,0,0,0.837847203816763,0.229160424011684,0,0,0,0,0.0671834724867263,1.44119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.298509605773748,0.934853239388898,0.554805861502613,0,1.0062716070103,0,0.228840068396924,0.151230923763239,0,0.147855149989634,0.159296767163702,0.449803112163605,0.465788870628778,1.24411862352257,1.06336685823198,3.1304703708704,0.300515217994437,11.8049615772327,0.406870733204662,0.545545977607678,0.859284456339908,0,1.99047944349308,0,8.92828833475262,7.40848875285022,0,0,0,0,7.48129554190499,0,1.22368352253234,0.179088841081487,0,0.877136198314828,0,0,0,0,0,0,0,0,0,0,0.982829546539238,0.491545817507439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.81605220784102,0,0,7.75887076119505,0,0.0642292250964595,0,0.159633859057151,0,0,0,0,0,0,0,0,0,1.52552838186867,0,0,0,0.20170506870352,0,0,1.47394725759087,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0.685952037749674,0,0,0,0,0.078493092850514,0,0,1.82631744101899,0,0,0,0,3.13851848493938,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0,0,0,0,0,3.4794432940146,0.485710993059139,0,0,0,0,0,0,0,0.655678681511872,0,0,0,0,0,0,7.13693881688831,0,0,0,0,0,0,0,0,0,0,0,0,1.0580536810308,14.8798007266701,1.84870251452567,6.48939843185684,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,1.1903221573187,0,0,0.224263725161227,0.0636471582781649,0,0,0,0,0.0717222053926763,0.665320713092027,0,0,0,0,0,0,2.03448089157869,0,0,0 | ||
|short_description=p@chr13:38153485..38153498,- | |short_description=p@chr13:38153485..38153498,- | ||
}} | }} |
Latest revision as of 15:53, 24 July 2015
Short description: | p@chr13:38153485..38153498, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:38153485..38153498, - |
Coexpression cluster: | C349_Mesothelial_Fibroblast_Preadipocyte_Ewing_mesenchymal_Skeletal_Smooth |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte | 9.94e-20 | 12 |
fibroblast | 2.97e-14 | 76 |
fibroblast of tunica adventitia of artery | 2.57e-10 | 4 |
fibroblast of the aortic adventitia | 2.57e-10 | 4 |
preadipocyte of the breast | 6.64e-09 | 3 |
fibrocyte | 7.56e-09 | 3 |
tendon cell | 7.56e-09 | 3 |
omentum preadipocyte | 1.73e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
artery wall | 2.57e-10 | 4 |
tunica adventitia of artery | 2.57e-10 | 4 |
adventitia | 2.57e-10 | 4 |
tunica adventitia of blood vessel | 2.57e-10 | 4 |
aorta tunica adventitia | 2.57e-10 | 4 |
aorta wall | 2.57e-10 | 4 |
dense regular connective tissue | 7.56e-09 | 3 |
tendon | 7.56e-09 | 3 |
regular connective tissue | 7.56e-09 | 3 |
chest | 1.29e-07 | 11 |