FFCP PHASE1:Hg19::chr20:60962115..60962126,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6227 | |EntrezGene=6227 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10409 | |HGNC=10409 | ||
|TSSclassifier=strong | |||
|UniProt=P63220,Q6FGH5,Q9BYK1 | |UniProt=P63220,Q6FGH5,Q9BYK1 | ||
|association_with_transcript=0bp_to_ENST00000343986,NM_001024,uc002ycr.2,uc002ycs.2,uc002yct.2_5end | |association_with_transcript=0bp_to_ENST00000343986,NM_001024,uc002ycr.2,uc002ycs.2,uc002yct.2_5end | ||
|cluster_id=chr20:60962115..60962126,+ | |||
|coexpression_cluster_id=C447 | |||
|description=CAGE_peak_2_at_RPS21_5end | |description=CAGE_peak_2_at_RPS21_5end | ||
|id=chr20:60962115..60962126,+ | |id=chr20:60962115..60962126,+ | ||
|ontology_enrichment_celltype=CL:0000012!1.03e-39!682;CL:0000548!1.80e-39!679;CL:0000004!1.80e-39!679;CL:0000255!1.80e-39!679;CL:0000220!4.97e-24!246;CL:0002321!6.75e-24!248;CL:0000003!4.11e-22!722;CL:0000144!4.27e-22!625;CL:0000066!1.36e-20!254;CL:0002371!4.75e-17!591;CL:0000055!1.57e-15!180;CL:0000183!3.30e-15!59;CL:0000222!1.39e-14!119;CL:0000393!2.72e-14!60;CL:0000211!2.72e-14!60;CL:0000680!7.95e-14!57;CL:0000056!7.95e-14!57;CL:0000355!7.95e-14!57;CL:0000187!1.74e-13!54;CL:0000192!2.52e-11!42;CL:0000514!2.52e-11!42;CL:0000063!1.94e-10!578;CL:0000359!4.41e-08!32 | |ontology_enrichment_celltype=CL:0000012!1.03e-39!682;CL:0000548!1.80e-39!679;CL:0000004!1.80e-39!679;CL:0000255!1.80e-39!679;CL:0000220!4.97e-24!246;CL:0002321!6.75e-24!248;CL:0000003!4.11e-22!722;CL:0000144!4.27e-22!625;CL:0000066!1.36e-20!254;CL:0002371!4.75e-17!591;CL:0000055!1.57e-15!180;CL:0000183!3.30e-15!59;CL:0000222!1.39e-14!119;CL:0000393!2.72e-14!60;CL:0000211!2.72e-14!60;CL:0000680!7.95e-14!57;CL:0000056!7.95e-14!57;CL:0000355!7.95e-14!57;CL:0000187!1.74e-13!54;CL:0000192!2.52e-11!42;CL:0000514!2.52e-11!42;CL:0000063!1.94e-10!578;CL:0000359!4.41e-08!32 | ||
|ontology_enrichment_celltype_v019=CL:0000192;4.34e-08;43!CL:0000187;7.12e-08;55!CL:0000359;1.04e-07;32!CL:0000393;3.85e-07;61!CL:0000211;3.85e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.88e-24,250;CL:0000066,1.51e-20,253;CL:0000222,6.99e-15,121;CL:0000393,3.11e-14,61;CL:0000211,3.11e-14,61;CL:0000680,9.16e-14,58;CL:0000056,9.16e-14,58;CL:0000355,9.16e-14,58;CL:0000187,2.02e-13,55;CL:0000192,3.00e-11,43;CL:0000514,3.00e-11,43;CL:0000359,4.41e-08,32 | |||
|ontology_enrichment_development_v019=CL:0000514;4.34e-08;43!CL:0000355;1.76e-07;58 | |||
|ontology_enrichment_disease=DOID:14566!1.51e-20!239;DOID:162!3.10e-19!235;DOID:0050687!4.76e-13!143;DOID:305!4.28e-11!106;DOID:0050686!3.19e-09!137 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,1.51e-20,239;DOID:162,3.10e-19,235;DOID:0050687,4.76e-13,143;DOID:305,4.28e-11,106;DOID:0050686,3.19e-09,137 | |||
|ontology_enrichment_uberon=UBERON:0003104!9.11e-16!238;UBERON:0009142!9.11e-16!238;UBERON:0000486!2.39e-14!82;UBERON:0000914!2.39e-14!83;UBERON:0002329!2.39e-14!83;UBERON:0003077!2.39e-14!83;UBERON:0003059!2.39e-14!83;UBERON:0007282!2.39e-14!83;UBERON:0009618!2.39e-14!83;UBERON:0007285!2.39e-14!83;UBERON:0005256!2.66e-14!143;UBERON:0004290!2.80e-14!70;UBERON:0002100!1.35e-13!216;UBERON:0001134!2.94e-12!61;UBERON:0002036!2.94e-12!61;UBERON:0003082!2.94e-12!61;UBERON:0002385!7.12e-11!63;UBERON:0001015!7.12e-11!63;UBERON:0000383!7.12e-11!63;UBERON:0000490!1.35e-10!138 | |||
|ontology_enrichment_uberon_v019=UBERON:0000072;1.20e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,2.30e-16,78;UBERON:0000486,2.51e-14,83;UBERON:0002329,3.06e-14,71;UBERON:0003059,3.06e-14,71;UBERON:0007282,3.06e-14,71;UBERON:0004290,3.06e-14,71;UBERON:0009618,3.06e-14,71;UBERON:0003077,1.65e-13,72;UBERON:0007285,1.65e-13,72;UBERON:0002100,2.02e-13,199;UBERON:0007524,2.27e-13,73;UBERON:0003104,1.68e-12,160;UBERON:0009142,1.68e-12,160;UBERON:0000490,2.10e-12,148;UBERON:0001134,3.21e-12,62;UBERON:0002036,3.21e-12,62;UBERON:0003082,3.21e-12,62;UBERON:0005256,8.07e-12,122;UBERON:0002385,7.48e-11,64;UBERON:0001015,7.48e-11,64;UBERON:0000383,7.48e-11,64 | |||
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| ||
|short_description=p2@RPS21 | |short_description=p2@RPS21 | ||
}} | }} |
Latest revision as of 10:32, 17 September 2015
Short description: | p2@RPS21 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RPS21_5end |
Coexpression cluster: | C447_Alveolar_Bronchial_Smooth_Renal_Tracheal_Keratocytes_Hepatic |
Association with transcript: | 0bp_to_ENST00000343986, NM_001024, uc002ycr.2, uc002ycs.2, uc002yct.2_5end |
EntrezGene: | RPS21 |
HGNC: | 10409 |
UniProt: | P63220Q6FGH5Q9BYK1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.88e-24 | 250 |
epithelial cell | 1.51e-20 | 253 |
mesodermal cell | 6.99e-15 | 121 |
electrically responsive cell | 3.11e-14 | 61 |
electrically active cell | 3.11e-14 | 61 |
muscle precursor cell | 9.16e-14 | 58 |
myoblast | 9.16e-14 | 58 |
multi-potent skeletal muscle stem cell | 9.16e-14 | 58 |
muscle cell | 2.02e-13 | 55 |
smooth muscle cell | 3.00e-11 | 43 |
smooth muscle myoblast | 3.00e-11 | 43 |
vascular associated smooth muscle cell | 4.41e-08 | 32 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 2.30e-16 | 78 |
multilaminar epithelium | 2.51e-14 | 83 |
somite | 3.06e-14 | 71 |
presomitic mesoderm | 3.06e-14 | 71 |
presumptive segmental plate | 3.06e-14 | 71 |
dermomyotome | 3.06e-14 | 71 |
trunk paraxial mesoderm | 3.06e-14 | 71 |
paraxial mesoderm | 1.65e-13 | 72 |
presumptive paraxial mesoderm | 1.65e-13 | 72 |
trunk | 2.02e-13 | 199 |
dense mesenchyme tissue | 2.27e-13 | 73 |
mesenchyme | 1.68e-12 | 160 |
entire embryonic mesenchyme | 1.68e-12 | 160 |
unilaminar epithelium | 2.10e-12 | 148 |
skeletal muscle tissue | 3.21e-12 | 62 |
striated muscle tissue | 3.21e-12 | 62 |
myotome | 3.21e-12 | 62 |
trunk mesenchyme | 8.07e-12 | 122 |
muscle tissue | 7.48e-11 | 64 |
musculature | 7.48e-11 | 64 |
musculature of body | 7.48e-11 | 64 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 1.51e-20 | 239 |
cancer | 3.10e-19 | 235 |
cell type cancer | 4.76e-13 | 143 |
carcinoma | 4.28e-11 | 106 |
organ system cancer | 3.19e-09 | 137 |