FFCP PHASE1:Hg19::chr17:48624510..48624571,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64847 | |EntrezGene=64847 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26125 | |HGNC=26125 | ||
|TSSclassifier=strong | |||
|UniProt=D6RC70,D6R947,Q8TB22 | |UniProt=D6RC70,D6R947,Q8TB22 | ||
|association_with_transcript=0bp_to_ENST00000393244,ENST00000502911,ENST00000505456,ENST00000505559,ENST00000508598,ENST00000510917,ENST00000511605,ENST00000511845,ENST00000515526,NM_022827_5end | |association_with_transcript=0bp_to_ENST00000393244,ENST00000502911,ENST00000505456,ENST00000505559,ENST00000508598,ENST00000510917,ENST00000511605,ENST00000511845,ENST00000515526,NM_022827_5end | ||
|cluster_id=chr17:48624510..48624571,+ | |||
|description=CAGE_peak_1_at_SPATA20_5end | |description=CAGE_peak_1_at_SPATA20_5end | ||
|id=chr17:48624510..48624571,+ | |id=chr17:48624510..48624571,+ | ||
|ontology_enrichment_celltype=CL:0000055!2.19e-14!180;CL:0000222!4.04e-11!119;CL:0000220!8.27e-10!246;CL:0002321!2.42e-09!248;CL:0000057!3.49e-09!75;CL:0000183!1.55e-07!59;CL:0000680!4.97e-07!57;CL:0000056!4.97e-07!57;CL:0000355!4.97e-07!57;CL:0000192!5.97e-07!42;CL:0000514!5.97e-07!42;CL:0000066!6.34e-07!254 | |ontology_enrichment_celltype=CL:0000055!2.19e-14!180;CL:0000222!4.04e-11!119;CL:0000220!8.27e-10!246;CL:0002321!2.42e-09!248;CL:0000057!3.49e-09!75;CL:0000183!1.55e-07!59;CL:0000680!4.97e-07!57;CL:0000056!4.97e-07!57;CL:0000355!4.97e-07!57;CL:0000192!5.97e-07!42;CL:0000514!5.97e-07!42;CL:0000066!6.34e-07!254 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.08e-11,121;CL:0002321,1.77e-09,250;CL:0000057,2.14e-09,76;CL:0000680,3.17e-07,58;CL:0000056,3.17e-07,58;CL:0000355,3.17e-07,58;CL:0000192,3.74e-07,43;CL:0000514,3.74e-07,43;CL:0000066,8.72e-07,253 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.25e-20!365;UBERON:0002100!4.42e-16!216;UBERON:0000483!1.65e-14!309;UBERON:0000481!1.97e-14!347;UBERON:0000119!4.23e-14!312;UBERON:0003104!5.64e-11!238;UBERON:0009142!5.64e-11!238;UBERON:0005256!9.70e-11!143;UBERON:0003914!1.65e-10!118;UBERON:0004111!4.67e-10!241;UBERON:0000025!1.64e-09!194;UBERON:0000490!2.07e-09!138;UBERON:0001637!4.79e-09!42;UBERON:0003509!4.79e-09!42;UBERON:0004572!4.79e-09!42;UBERON:0000477!5.34e-09!286;UBERON:0004573!6.34e-09!33;UBERON:0004571!6.34e-09!33;UBERON:0000468!1.08e-08!659;UBERON:0009569!1.18e-08!113;UBERON:0000914!6.52e-08!83;UBERON:0002329!6.52e-08!83;UBERON:0003077!6.52e-08!83;UBERON:0003059!6.52e-08!83;UBERON:0007282!6.52e-08!83;UBERON:0009618!6.52e-08!83;UBERON:0007285!6.52e-08!83;UBERON:0001981!8.21e-08!60;UBERON:0007500!8.21e-08!60;UBERON:0004537!8.21e-08!60;UBERON:0006965!8.21e-08!60;UBERON:0004872!1.07e-07!84;UBERON:0000467!1.25e-07!625;UBERON:0002049!1.53e-07!79;UBERON:0007798!1.53e-07!79;UBERON:0000055!1.57e-07!69;UBERON:0004290!1.92e-07!70;UBERON:0000480!1.97e-07!626;UBERON:0000486!2.24e-07!82;UBERON:0001134!4.15e-07!61;UBERON:0002036!4.15e-07!61;UBERON:0003082!4.15e-07!61;UBERON:0005177!5.86e-07!107;UBERON:0002385!8.96e-07!63;UBERON:0001015!8.96e-07!63;UBERON:0000383!8.96e-07!63 | |ontology_enrichment_uberon=UBERON:0000475!1.25e-20!365;UBERON:0002100!4.42e-16!216;UBERON:0000483!1.65e-14!309;UBERON:0000481!1.97e-14!347;UBERON:0000119!4.23e-14!312;UBERON:0003104!5.64e-11!238;UBERON:0009142!5.64e-11!238;UBERON:0005256!9.70e-11!143;UBERON:0003914!1.65e-10!118;UBERON:0004111!4.67e-10!241;UBERON:0000025!1.64e-09!194;UBERON:0000490!2.07e-09!138;UBERON:0001637!4.79e-09!42;UBERON:0003509!4.79e-09!42;UBERON:0004572!4.79e-09!42;UBERON:0000477!5.34e-09!286;UBERON:0004573!6.34e-09!33;UBERON:0004571!6.34e-09!33;UBERON:0000468!1.08e-08!659;UBERON:0009569!1.18e-08!113;UBERON:0000914!6.52e-08!83;UBERON:0002329!6.52e-08!83;UBERON:0003077!6.52e-08!83;UBERON:0003059!6.52e-08!83;UBERON:0007282!6.52e-08!83;UBERON:0009618!6.52e-08!83;UBERON:0007285!6.52e-08!83;UBERON:0001981!8.21e-08!60;UBERON:0007500!8.21e-08!60;UBERON:0004537!8.21e-08!60;UBERON:0006965!8.21e-08!60;UBERON:0004872!1.07e-07!84;UBERON:0000467!1.25e-07!625;UBERON:0002049!1.53e-07!79;UBERON:0007798!1.53e-07!79;UBERON:0000055!1.57e-07!69;UBERON:0004290!1.92e-07!70;UBERON:0000480!1.97e-07!626;UBERON:0000486!2.24e-07!82;UBERON:0001134!4.15e-07!61;UBERON:0002036!4.15e-07!61;UBERON:0003082!4.15e-07!61;UBERON:0005177!5.86e-07!107;UBERON:0002385!8.96e-07!63;UBERON:0001015!8.96e-07!63;UBERON:0000383!8.96e-07!63 | ||
|ontology_enrichment_uberon_v019=UBERON:0004573;4.02e-08;33!UBERON:0004571;4.02e-08;33!UBERON:0001637;4.19e-07;42!UBERON:0003509;4.19e-07;42!UBERON:0004572;4.19e-07;42 | |||
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| ||
|short_description=p1@SPATA20 | |short_description=p1@SPATA20 | ||
}} | }} |
Latest revision as of 03:07, 16 September 2015
Short description: | p1@SPATA20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SPATA20_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000393244, ENST00000502911, ENST00000505456, ENST00000505559, ENST00000508598, ENST00000510917, ENST00000511605, ENST00000511845, ENST00000515526, NM_022827_5end |
EntrezGene: | SPATA20 |
HGNC: | 26125 |
UniProt: | D6RC70D6R947Q8TB22 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.08e-11 | 121 |
embryonic cell | 1.77e-09 | 250 |
fibroblast | 2.14e-09 | 76 |
muscle precursor cell | 3.17e-07 | 58 |
myoblast | 3.17e-07 | 58 |
multi-potent skeletal muscle stem cell | 3.17e-07 | 58 |
smooth muscle cell | 3.74e-07 | 43 |
smooth muscle myoblast | 3.74e-07 | 43 |
epithelial cell | 8.72e-07 | 253 |