FFCP PHASE1:Hg19::chr1:155232084..155232095,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10067 | |EntrezGene=10067 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10565 | |HGNC=10565 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=24bp_to_ENST00000480219_5end | |association_with_transcript=24bp_to_ENST00000480219_5end | ||
|cluster_id=chr1:155232084..155232095,- | |||
|description=CAGE_peak_5_at_SCAMP3_5end | |description=CAGE_peak_5_at_SCAMP3_5end | ||
|id=chr1:155232084..155232095,- | |id=chr1:155232084..155232095,- | ||
|ontology_enrichment_celltype=CL:0000055!2.91e-13!180;CL:0000548!5.53e-11!679;CL:0000004!5.53e-11!679;CL:0000255!5.53e-11!679;CL:0000012!6.37e-11!682;CL:0000220!1.83e-09!246;CL:0002321!3.05e-09!248;CL:0002371!1.60e-08!591;CL:0000192!4.99e-08!42;CL:0000514!4.99e-08!42;CL:0000222!1.35e-07!119;CL:0000144!2.08e-07!625;CL:0000183!2.92e-07!59;CL:0000680!4.52e-07!57;CL:0000056!4.52e-07!57;CL:0000355!4.52e-07!57;CL:0000359!8.24e-07!32 | |ontology_enrichment_celltype=CL:0000055!2.91e-13!180;CL:0000548!5.53e-11!679;CL:0000004!5.53e-11!679;CL:0000255!5.53e-11!679;CL:0000012!6.37e-11!682;CL:0000220!1.83e-09!246;CL:0002321!3.05e-09!248;CL:0002371!1.60e-08!591;CL:0000192!4.99e-08!42;CL:0000514!4.99e-08!42;CL:0000222!1.35e-07!119;CL:0000144!2.08e-07!625;CL:0000183!2.92e-07!59;CL:0000680!4.52e-07!57;CL:0000056!4.52e-07!57;CL:0000355!4.52e-07!57;CL:0000359!8.24e-07!32 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,3.90e-09,250;CL:0000192,2.02e-08,43;CL:0000514,2.02e-08,43;CL:0000680,1.70e-07,58;CL:0000056,1.70e-07,58;CL:0000355,1.70e-07,58;CL:0000222,2.18e-07,121;CL:0000359,6.88e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!5.60e-07!239 | |ontology_enrichment_disease=DOID:14566!5.60e-07!239 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000055!2.62e-08!69;UBERON:0002049!7.86e-08!79;UBERON:0007798!7.86e-08!79;UBERON:0002100!2.45e-07!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,5.31e-08,78;UBERON:0000055,5.47e-08,68;UBERON:0002100,7.41e-08,199;UBERON:0002049,1.91e-07,78;UBERON:0007798,1.91e-07,78 | |||
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| ||
|short_description=p5@SCAMP3 | |short_description=p5@SCAMP3 | ||
}} | }} |
Latest revision as of 12:12, 17 September 2015
Short description: | p5@SCAMP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SCAMP3_5end |
Coexpression cluster: | NA |
Association with transcript: | 24bp_to_ENST00000480219_5end |
EntrezGene: | SCAMP3 |
HGNC: | 10565 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 3.90e-09 | 250 |
smooth muscle cell | 2.02e-08 | 43 |
smooth muscle myoblast | 2.02e-08 | 43 |
muscle precursor cell | 1.70e-07 | 58 |
myoblast | 1.70e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.70e-07 | 58 |
mesodermal cell | 2.18e-07 | 121 |
vascular associated smooth muscle cell | 6.88e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 5.31e-08 | 78 |
vessel | 5.47e-08 | 68 |
trunk | 7.41e-08 | 199 |
vasculature | 1.91e-07 | 78 |
vascular system | 1.91e-07 | 78 |