FFCP PHASE1:Hg19::chr4:1165213..1165245,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:1165213..1165245,+ | |||
|coexpression_cluster_id=C574 | |||
|description=CAGE_peak_at_chr4:1165213..1165245,+ | |description=CAGE_peak_at_chr4:1165213..1165245,+ | ||
|id=chr4:1165213..1165245,+ | |id=chr4:1165213..1165245,+ | ||
|ontology_enrichment_celltype=CL:0002334!2.78e-14!12;CL:0000048!1.65e-10!430;CL:0000723!6.05e-10!436;CL:0000034!1.41e-09!444;CL:0000055!1.88e-09!180;CL:0000187!1.95e-08!54;CL:0000057!3.48e-08!75;CL:0000680!1.30e-07!57;CL:0000056!1.30e-07!57;CL:0000355!1.30e-07!57;CL:0000183!4.05e-07!59;CL:0000393!6.92e-07!60;CL:0000211!6.92e-07!60 | |ontology_enrichment_celltype=CL:0002334!2.78e-14!12;CL:0000048!1.65e-10!430;CL:0000723!6.05e-10!436;CL:0000034!1.41e-09!444;CL:0000055!1.88e-09!180;CL:0000187!1.95e-08!54;CL:0000057!3.48e-08!75;CL:0000680!1.30e-07!57;CL:0000056!1.30e-07!57;CL:0000355!1.30e-07!57;CL:0000183!4.05e-07!59;CL:0000393!6.92e-07!60;CL:0000211!6.92e-07!60 | ||
|ontology_enrichment_celltype_v019=CL:0002334;5.65e-19;12!CL:0002504;3.63e-11;3!CL:1000279;3.63e-11;3!CL:1000280;3.63e-11;3!CL:0000136;5.10e-11;13!CL:0002622;1.33e-10;3!CL:0002615;1.72e-10;3!CL:0002579;7.06e-10;3!CL:0002569;9.91e-09;6!CL:0000134;4.48e-08;55!CL:0002617;2.20e-07;2!CL:0002598;2.20e-07;2!CL:0002600;2.20e-07;2!CL:0000048;2.29e-07;58!CL:0000349;2.58e-07;19!CL:0002195;6.55e-07;2!CL:0002571;6.55e-07;2!CL:0002588;6.55e-07;2!CL:0002602;6.55e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002334,5.76e-19,12;CL:0000136,3.34e-12,15;CL:0002504,3.22e-11,3;CL:1000279,3.22e-11,3;CL:1000280,3.22e-11,3;CL:0000048,4.90e-11,427;CL:0002622,8.31e-11,3;CL:0000723,1.05e-10,433;CL:0002615,1.98e-10,3;CL:0000034,2.82e-10,441;CL:0002579,9.68e-10,3;CL:0002569,6.06e-09,6;CL:0000192,3.33e-08,43;CL:0000514,3.33e-08,43;CL:0000187,3.37e-08,55;CL:0000680,1.30e-07,58;CL:0000056,1.30e-07,58;CL:0000355,1.30e-07,58;CL:0002598,1.46e-07,2;CL:0000349,2.03e-07,19;CL:0002600,2.76e-07,2;CL:0002602,3.23e-07,2;CL:0002617,3.34e-07,2;CL:0000393,4.35e-07,61;CL:0000211,4.35e-07,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!1.11e-07!14 | |ontology_enrichment_disease=DOID:2394!1.11e-07!14 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004290!7.91e-10!70;UBERON:0000914!4.03e-09!83;UBERON:0002329!4.03e-09!83;UBERON:0003077!4.03e-09!83;UBERON:0003059!4.03e-09!83;UBERON:0007282!4.03e-09!83;UBERON:0009618!4.03e-09!83;UBERON:0007285!4.03e-09!83;UBERON:0003688!1.15e-08!6;UBERON:0002358!1.15e-08!6;UBERON:0003684!1.15e-08!6;UBERON:0001178!1.15e-08!6;UBERON:0002385!1.75e-08!63;UBERON:0001015!1.75e-08!63;UBERON:0000383!1.75e-08!63;UBERON:0001134!2.63e-08!61;UBERON:0002036!2.63e-08!61;UBERON:0003082!2.63e-08!61;UBERON:0000486!2.88e-08!82;UBERON:0004923!7.00e-08!57;UBERON:0005256!1.75e-07!143;UBERON:0000478!3.18e-07!24;UBERON:0004457!3.92e-07!12;UBERON:0000042!3.92e-07!12;UBERON:0005631!8.41e-07!14;UBERON:0000158!8.41e-07!14 | |ontology_enrichment_uberon=UBERON:0004290!7.91e-10!70;UBERON:0000914!4.03e-09!83;UBERON:0002329!4.03e-09!83;UBERON:0003077!4.03e-09!83;UBERON:0003059!4.03e-09!83;UBERON:0007282!4.03e-09!83;UBERON:0009618!4.03e-09!83;UBERON:0007285!4.03e-09!83;UBERON:0003688!1.15e-08!6;UBERON:0002358!1.15e-08!6;UBERON:0003684!1.15e-08!6;UBERON:0001178!1.15e-08!6;UBERON:0002385!1.75e-08!63;UBERON:0001015!1.75e-08!63;UBERON:0000383!1.75e-08!63;UBERON:0001134!2.63e-08!61;UBERON:0002036!2.63e-08!61;UBERON:0003082!2.63e-08!61;UBERON:0000486!2.88e-08!82;UBERON:0004923!7.00e-08!57;UBERON:0005256!1.75e-07!143;UBERON:0000478!3.18e-07!24;UBERON:0004457!3.92e-07!12;UBERON:0000042!3.92e-07!12;UBERON:0005631!8.41e-07!14;UBERON:0000158!8.41e-07!14 | ||
|ontology_enrichment_uberon_v019=UBERON:0003688;1.21e-18;6!UBERON:0002358;1.21e-18;6!UBERON:0003684;1.21e-18;6!UBERON:0001178;1.21e-18;6!UBERON:0004457;3.42e-12;9!UBERON:0000042;3.42e-12;9!UBERON:0003422;9.91e-09;6!UBERON:0003104;1.76e-07;7!UBERON:0009142;1.76e-07;7!UBERON:0006444;6.55e-07;2!UBERON:0001995;6.55e-07;2!UBERON:0004715;6.55e-07;2!UBERON:0001443;9.58e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,1.90e-18,6;UBERON:0002358,1.90e-18,6;UBERON:0003684,1.90e-18,6;UBERON:0001178,1.90e-18,6;UBERON:0001134,2.91e-09,62;UBERON:0002036,2.91e-09,62;UBERON:0003082,2.91e-09,62;UBERON:0003104,3.99e-09,160;UBERON:0009142,3.99e-09,160;UBERON:0003422,6.06e-09,6;UBERON:0004457,7.18e-09,12;UBERON:0000042,7.18e-09,12;UBERON:0002385,7.40e-09,64;UBERON:0001015,7.40e-09,64;UBERON:0000383,7.40e-09,64;UBERON:0002100,9.60e-09,199;UBERON:0005256,8.67e-08,122;UBERON:0002329,1.26e-07,71;UBERON:0003059,1.26e-07,71;UBERON:0007282,1.26e-07,71;UBERON:0004290,1.26e-07,71;UBERON:0009618,1.26e-07,71;UBERON:0003077,1.81e-07,72;UBERON:0007285,1.81e-07,72;UBERON:0007524,2.56e-07,73;UBERON:0006444,3.23e-07,2;UBERON:0001995,3.23e-07,2;UBERON:0004715,3.23e-07,2;UBERON:0001443,8.58e-07,11 | |||
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| ||
|short_description=p@chr4:1165213..1165245,+ | |short_description=p@chr4:1165213..1165245,+ | ||
}} | }} |
Latest revision as of 01:10, 30 July 2015
Short description: | p@chr4:1165213..1165245, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:1165213..1165245, + |
Coexpression cluster: | C574_Mesenchymal_Fibroblast_Smooth_Prostate_Adipocyte_Hair_mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte | 5.76e-19 | 12 |
fat cell | 3.34e-12 | 15 |
enteric smooth muscle cell | 3.22e-11 | 3 |
smooth muscle cell of large intestine | 3.22e-11 | 3 |
smooth muscle cell of colon | 3.22e-11 | 3 |
multi fate stem cell | 4.90e-11 | 427 |
prostate stromal cell | 8.31e-11 | 3 |
somatic stem cell | 1.05e-10 | 433 |
adipocyte of omentum tissue | 1.98e-10 | 3 |
stem cell | 2.82e-10 | 441 |
omentum preadipocyte | 9.68e-10 | 3 |
mesenchymal stem cell of umbilical cord | 6.06e-09 | 6 |
smooth muscle cell | 3.33e-08 | 43 |
smooth muscle myoblast | 3.33e-08 | 43 |
muscle cell | 3.37e-08 | 55 |
muscle precursor cell | 1.30e-07 | 58 |
myoblast | 1.30e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.30e-07 | 58 |
bronchial smooth muscle cell | 1.46e-07 | 2 |
extraembryonic cell | 2.03e-07 | 19 |
smooth muscle cell of trachea | 2.76e-07 | 2 |
annulus pulposus cell | 3.23e-07 | 2 |
adipocyte of breast | 3.34e-07 | 2 |
electrically responsive cell | 4.35e-07 | 61 |
electrically active cell | 4.35e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
omentum | 1.90e-18 | 6 |
peritoneum | 1.90e-18 | 6 |
abdominal cavity | 1.90e-18 | 6 |
visceral peritoneum | 1.90e-18 | 6 |
skeletal muscle tissue | 2.91e-09 | 62 |
striated muscle tissue | 2.91e-09 | 62 |
myotome | 2.91e-09 | 62 |
mesenchyme | 3.99e-09 | 160 |
entire embryonic mesenchyme | 3.99e-09 | 160 |
mesenchyme of umbilical cord | 6.06e-09 | 6 |
cavity lining | 7.18e-09 | 12 |
serous membrane | 7.18e-09 | 12 |
muscle tissue | 7.40e-09 | 64 |
musculature | 7.40e-09 | 64 |
musculature of body | 7.40e-09 | 64 |
trunk | 9.60e-09 | 199 |
trunk mesenchyme | 8.67e-08 | 122 |
somite | 1.26e-07 | 71 |
presomitic mesoderm | 1.26e-07 | 71 |
presumptive segmental plate | 1.26e-07 | 71 |
dermomyotome | 1.26e-07 | 71 |
trunk paraxial mesoderm | 1.26e-07 | 71 |
paraxial mesoderm | 1.81e-07 | 72 |
presumptive paraxial mesoderm | 1.81e-07 | 72 |
dense mesenchyme tissue | 2.56e-07 | 73 |
annulus fibrosus | 3.23e-07 | 2 |
fibrocartilage | 3.23e-07 | 2 |
annulus fibrosus disci intervertebralis | 3.23e-07 | 2 |
chest | 8.58e-07 | 11 |