FFCP PHASE1:Hg19::chr19:18897375..18897390,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1311 | |EntrezGene=1311 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2227 | |HGNC=2227 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=453bp_to_ENST00000546510_5end | |association_with_transcript=453bp_to_ENST00000546510_5end | ||
|cluster_id=chr19:18897375..18897390,- | |||
|coexpression_cluster_id=C240 | |||
|description=CAGE_peak_4_at_COMP_5end | |description=CAGE_peak_4_at_COMP_5end | ||
|id=chr19:18897375..18897390,- | |id=chr19:18897375..18897390,- | ||
|ontology_enrichment_celltype=CL:0000136!2.48e-22!15;CL:0002334!3.40e-22!12;CL:0000153!8.59e-17!9;CL:0000447!8.59e-17!9;CL:0002580!2.42e-14!3;CL:0002615!3.59e-14!3;CL:0000135!4.88e-14!3;CL:0000386!4.88e-14!3;CL:0000388!4.88e-14!3;CL:0002579!1.06e-13!3;CL:0000057!1.73e-12!75;CL:0000667!6.73e-12!6;CL:0000058!6.73e-12!6;CL:0000138!6.73e-12!6;CL:0000499!1.75e-11!27;CL:0000327!1.45e-10!14;CL:0002617!2.62e-10!2;CL:0000055!7.03e-08!180;CL:0000325!1.45e-07!39;CL:0000134!6.75e-07!358 | |ontology_enrichment_celltype=CL:0000136!2.48e-22!15;CL:0002334!3.40e-22!12;CL:0000153!8.59e-17!9;CL:0000447!8.59e-17!9;CL:0002580!2.42e-14!3;CL:0002615!3.59e-14!3;CL:0000135!4.88e-14!3;CL:0000386!4.88e-14!3;CL:0000388!4.88e-14!3;CL:0002579!1.06e-13!3;CL:0000057!1.73e-12!75;CL:0000667!6.73e-12!6;CL:0000058!6.73e-12!6;CL:0000138!6.73e-12!6;CL:0000499!1.75e-11!27;CL:0000327!1.45e-10!14;CL:0002617!2.62e-10!2;CL:0000055!7.03e-08!180;CL:0000325!1.45e-07!39;CL:0000134!6.75e-07!358 | ||
|ontology_enrichment_celltype_v019=CL:0002334;1.56e-34;12!CL:0000136;2.81e-32;13!CL:0002580;3.72e-27;3!CL:0002615;9.00e-27;3!CL:0000135;1.28e-26;3!CL:0000388;1.28e-26;3!CL:0002579;6.68e-26;3!CL:0002617;4.49e-19;2!CL:0000153;1.11e-15;9!CL:0000447;1.11e-15;9!CL:0000499;1.87e-14;28!CL:0000138;1.20e-13;6!CL:0002616;3.10e-10;1!CL:0002581;4.06e-10;1!CL:0000327;1.73e-09;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002334,1.56e-34,12;CL:0000136,6.31e-28,15;CL:0002580,3.56e-27,3;CL:0002615,7.88e-27,3;CL:0000135,1.46e-26,3;CL:0000388,1.46e-26,3;CL:0002579,6.98e-26,3;CL:0002617,4.49e-19,2;CL:0000153,1.07e-15,9;CL:0000447,1.07e-15,9;CL:0000499,1.89e-14,28;CL:0000058,1.13e-13,6;CL:0000138,1.13e-13,6;CL:0000057,6.03e-12,76;CL:0002616,2.84e-10,1;CL:0002581,4.06e-10,1;CL:0000134,1.30e-09,354;CL:0000327,1.70e-09,15;CL:0002320,2.34e-09,361;CL:0000219,1.85e-08,386;CL:0000048,2.34e-07,427;CL:0000723,3.32e-07,433;CL:0000034,5.23e-07,441 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003688!4.19e-26!6;UBERON:0002358!4.19e-26!6;UBERON:0003684!4.19e-26!6;UBERON:0001178!4.19e-26!6;UBERON:0004457!4.26e-22!12;UBERON:0000042!4.26e-22!12;UBERON:0000043!4.88e-14!3;UBERON:0000310!2.75e-11!10;UBERON:0001443!3.14e-10!11;UBERON:0005406!4.27e-10!2;UBERON:0002133!3.38e-09!2;UBERON:0004923!2.95e-08!57;UBERON:0001013!1.71e-07!14 | |ontology_enrichment_uberon=UBERON:0003688!4.19e-26!6;UBERON:0002358!4.19e-26!6;UBERON:0003684!4.19e-26!6;UBERON:0001178!4.19e-26!6;UBERON:0004457!4.26e-22!12;UBERON:0000042!4.26e-22!12;UBERON:0000043!4.88e-14!3;UBERON:0000310!2.75e-11!10;UBERON:0001443!3.14e-10!11;UBERON:0005406!4.27e-10!2;UBERON:0002133!3.38e-09!2;UBERON:0004923!2.95e-08!57;UBERON:0001013!1.71e-07!14 | ||
|ontology_enrichment_uberon_v019=UBERON:0003688;7.53e-51;6!UBERON:0002358;7.53e-51;6!UBERON:0003684;7.53e-51;6!UBERON:0001178;7.53e-51;6!UBERON:0004457;7.28e-46;9!UBERON:0000042;7.28e-46;9!UBERON:0007846;1.28e-26;3!UBERON:0000043;1.28e-26;3!UBERON:0007845;1.28e-26;3!UBERON:0000310;3.37e-22;10!UBERON:0001443;3.56e-20;11!UBERON:0005406;1.31e-18;2!UBERON:0004458;3.98e-07;48 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,6.90e-51,6;UBERON:0002358,6.90e-51,6;UBERON:0003684,6.90e-51,6;UBERON:0001178,6.90e-51,6;UBERON:0004457,2.85e-34,12;UBERON:0000042,2.85e-34,12;UBERON:0007846,1.46e-26,3;UBERON:0000043,1.46e-26,3;UBERON:0007845,1.46e-26,3;UBERON:0000310,3.29e-22,10;UBERON:0001443,3.49e-20,11;UBERON:0005406,1.20e-18,2;UBERON:0002384,5.20e-09,371;UBERON:0004458,7.27e-08,49;UBERON:0009569,1.18e-07,112 | |||
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|phase1_expression=12.717486548939,16.6998408634967,3.52386010239928,13.009528785907,4.91657203870017,8.72338524100369,0,0,1.04474251279935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,1.50401373190767,6.51809335323707,0,9.24606253575008,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03056216018252,0.18611685633159,0.675105328965065,0.487185025805993,0,0,0,0.355009592516614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.902838299183157,27.2889004867182,0,0,0,0,0,0,0,0,0,0,0,0.604780586659361,4.71404834855676,8.5938705041315,15.9976253826852,1.15325234330131,3.07024349440022,2.57366273829772,5.93672265779964,0,0,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.64436797654861,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0.717873024576814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.662091970365432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0,0,0.686791410365586,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.992422356778588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.71995018166751,4.62175628631418,8.21990468035199,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0.435433495793923,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p4@COMP | |short_description=p4@COMP | ||
}} | }} |
Latest revision as of 18:04, 16 September 2015
Short description: | p4@COMP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_COMP_5end |
Coexpression cluster: | C240_Adipocyte_Preadipocyte_Osteoblast_Chondrocyte_tenocyte_Synoviocyte_mesenchymal |
Association with transcript: | 453bp_to_ENST00000546510_5end |
EntrezGene: | COMP |
HGNC: | 2227 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte | 1.56e-34 | 12 |
fat cell | 6.31e-28 | 15 |
preadipocyte of the breast | 3.56e-27 | 3 |
adipocyte of omentum tissue | 7.88e-27 | 3 |
fibrocyte | 1.46e-26 | 3 |
tendon cell | 1.46e-26 | 3 |
omentum preadipocyte | 6.98e-26 | 3 |
adipocyte of breast | 4.49e-19 | 2 |
GAG secreting cell | 1.07e-15 | 9 |
carbohydrate secreting cell | 1.07e-15 | 9 |
stromal cell | 1.89e-14 | 28 |
chondroblast | 1.13e-13 | 6 |
chondrocyte | 1.13e-13 | 6 |
fibroblast | 6.03e-12 | 76 |
perirenal adipocyte cell | 2.84e-10 | 1 |
perirenal preadipocyte | 4.06e-10 | 1 |
mesenchymal cell | 1.30e-09 | 354 |
extracellular matrix secreting cell | 1.70e-09 | 15 |
connective tissue cell | 2.34e-09 | 361 |
motile cell | 1.85e-08 | 386 |
multi fate stem cell | 2.34e-07 | 427 |
somatic stem cell | 3.32e-07 | 433 |
stem cell | 5.23e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
omentum | 6.90e-51 | 6 |
peritoneum | 6.90e-51 | 6 |
abdominal cavity | 6.90e-51 | 6 |
visceral peritoneum | 6.90e-51 | 6 |
cavity lining | 2.85e-34 | 12 |
serous membrane | 2.85e-34 | 12 |
dense regular connective tissue | 1.46e-26 | 3 |
tendon | 1.46e-26 | 3 |
regular connective tissue | 1.46e-26 | 3 |
breast | 3.29e-22 | 10 |
chest | 3.49e-20 | 11 |
perirenal fat | 1.20e-18 | 2 |
connective tissue | 5.20e-09 | 371 |
body cavity or lining | 7.27e-08 | 49 |
subdivision of trunk | 1.18e-07 | 112 |