FFCP PHASE1:Hg19::chr17:48262750..48262761,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt=P02452 | |UniProt=P02452 | ||
|association_with_transcript=178bp_to_M32798_5end | |association_with_transcript=178bp_to_M32798_5end | ||
|cluster_id=chr17:48262750..48262761,- | |||
|coexpression_cluster_id=C59 | |coexpression_cluster_id=C59 | ||
|description=CAGE_peak_23_at_COL1A1_5end | |description=CAGE_peak_23_at_COL1A1_5end | ||
|id=chr17:48262750..48262761,- | |id=chr17:48262750..48262761,- | ||
|ontology_enrichment_celltype=CL:0000055!4.03e-42!180;CL:0000057!4.48e-24!75;CL:0000183!9.43e-18!59;CL:0000680!1.56e-17!57;CL:0000056!1.56e-17!57;CL:0000355!1.56e-17!57;CL:0000187!9.96e-17!54;CL:0000393!3.35e-15!60;CL:0000211!3.35e-15!60;CL:0000048!5.79e-14!430;CL:0000723!3.31e-13!436;CL:0000192!3.46e-13!42;CL:0000514!3.46e-13!42;CL:0000034!1.06e-12!444;CL:0000144!2.19e-10!625;CL:0002371!3.24e-10!591;CL:0002620!2.12e-09!23;CL:0000359!4.22e-09!32;CL:0002334!1.10e-08!12 | |ontology_enrichment_celltype=CL:0000055!4.03e-42!180;CL:0000057!4.48e-24!75;CL:0000183!9.43e-18!59;CL:0000680!1.56e-17!57;CL:0000056!1.56e-17!57;CL:0000355!1.56e-17!57;CL:0000187!9.96e-17!54;CL:0000393!3.35e-15!60;CL:0000211!3.35e-15!60;CL:0000048!5.79e-14!430;CL:0000723!3.31e-13!436;CL:0000192!3.46e-13!42;CL:0000514!3.46e-13!42;CL:0000034!1.06e-12!444;CL:0000144!2.19e-10!625;CL:0002371!3.24e-10!591;CL:0002620!2.12e-09!23;CL:0000359!4.22e-09!32;CL:0002334!1.10e-08!12 | ||
|ontology_enrichment_celltype_v019=CL:0000134;4.70e-13;55!CL:0000723;2.11e-11;61!CL:0000048;3.12e-11;58!CL:0000187;4.51e-11;55!CL:0000192;1.81e-10;43!CL:0002334;2.76e-10;12!CL:0002320;1.14e-09;188!CL:0000359;3.06e-09;32!CL:0000057;3.53e-09;73!CL:0000499;8.78e-09;28!CL:0000393;2.86e-08;61!CL:0000211;2.86e-08;61!CL:0000327;3.71e-08;15!CL:0002570;6.61e-08;8!CL:0000034;6.65e-08;69!CL:0000349;6.75e-08;19!CL:0002620;1.09e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.26e-23,76;CL:0000048,8.83e-21,427;CL:0000723,9.40e-20,433;CL:0000680,4.06e-19,58;CL:0000056,4.06e-19,58;CL:0000355,4.06e-19,58;CL:0000187,8.38e-19,55;CL:0000034,1.94e-18,441;CL:0000393,1.82e-15,61;CL:0000211,1.82e-15,61;CL:0000192,2.59e-14,43;CL:0000514,2.59e-14,43;CL:0002334,2.27e-10,12;CL:0002320,9.13e-10,361;CL:0000359,1.13e-09,32;CL:0000134,8.58e-09,354;CL:0000499,9.08e-09,28;CL:0000327,3.57e-08,15;CL:0002570,6.41e-08,8;CL:0000349,6.98e-08,19;CL:0002620,9.93e-08,23;CL:0000219,4.08e-07,386;CL:0000222,7.73e-07,121 | |||
|ontology_enrichment_development_v019=CL:0000514;1.81e-10;43!CL:0000355;2.52e-10;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:2394;6.38e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,6.90e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!7.79e-18!83;UBERON:0002329!7.79e-18!83;UBERON:0003077!7.79e-18!83;UBERON:0003059!7.79e-18!83;UBERON:0007282!7.79e-18!83;UBERON:0009618!7.79e-18!83;UBERON:0007285!7.79e-18!83;UBERON:0001134!1.67e-17!61;UBERON:0002036!1.67e-17!61;UBERON:0003082!1.67e-17!61;UBERON:0004290!1.84e-17!70;UBERON:0002385!5.76e-17!63;UBERON:0001015!5.76e-17!63;UBERON:0000383!5.76e-17!63;UBERON:0000486!1.40e-13!82;UBERON:0005256!1.28e-10!143;UBERON:0002100!1.07e-07!216;UBERON:0002199!2.16e-07!45;UBERON:0002416!2.16e-07!45;UBERON:0000475!6.03e-07!365 | |ontology_enrichment_uberon=UBERON:0000914!7.79e-18!83;UBERON:0002329!7.79e-18!83;UBERON:0003077!7.79e-18!83;UBERON:0003059!7.79e-18!83;UBERON:0007282!7.79e-18!83;UBERON:0009618!7.79e-18!83;UBERON:0007285!7.79e-18!83;UBERON:0001134!1.67e-17!61;UBERON:0002036!1.67e-17!61;UBERON:0003082!1.67e-17!61;UBERON:0004290!1.84e-17!70;UBERON:0002385!5.76e-17!63;UBERON:0001015!5.76e-17!63;UBERON:0000383!5.76e-17!63;UBERON:0000486!1.40e-13!82;UBERON:0005256!1.28e-10!143;UBERON:0002100!1.07e-07!216;UBERON:0002199!2.16e-07!45;UBERON:0002416!2.16e-07!45;UBERON:0000475!6.03e-07!365 | ||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.14e-09;198!UBERON:0002385;2.42e-08;31!UBERON:0001015;2.42e-08;31!UBERON:0000383;2.42e-08;31!UBERON:0004457;2.51e-07;9!UBERON:0000042;2.51e-07;9!UBERON:0003104;2.76e-07;7!UBERON:0009142;2.76e-07;7!UBERON:0001013;3.13e-07;14!UBERON:0002204;5.52e-07;70!UBERON:0003688;5.61e-07;6!UBERON:0002358;5.61e-07;6!UBERON:0003684;5.61e-07;6!UBERON:0001178;5.61e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,1.98e-19,62;UBERON:0002036,1.98e-19,62;UBERON:0003082,1.98e-19,62;UBERON:0002385,2.67e-18,64;UBERON:0001015,2.67e-18,64;UBERON:0000383,2.67e-18,64;UBERON:0007524,1.28e-17,73;UBERON:0002329,2.41e-17,71;UBERON:0003059,2.41e-17,71;UBERON:0007282,2.41e-17,71;UBERON:0004290,2.41e-17,71;UBERON:0009618,2.41e-17,71;UBERON:0003077,7.23e-17,72;UBERON:0007285,7.23e-17,72;UBERON:0007503,7.02e-16,78;UBERON:0000486,2.59e-14,83;UBERON:0005256,2.39e-10,122;UBERON:0002384,6.72e-10,371;UBERON:0003104,5.92e-09,160;UBERON:0009142,5.92e-09,160;UBERON:0001013,3.06e-07,14;UBERON:0002199,5.72e-07,46;UBERON:0002416,5.72e-07,46;UBERON:0003688,6.05e-07,6;UBERON:0002358,6.05e-07,6;UBERON:0003684,6.05e-07,6;UBERON:0001178,6.05e-07,6;UBERON:0000490,6.78e-07,148 | |||
|phase1_expression=16.7144108928912,19.4831476740795,21.1431606143957,11.0080628188443,24.1358990990735,9.59572376510406,10.1319951267324,0,0.261185628199839,0.245733936501509,0,1.52908960491121,5.53910654279752,0.866364470720326,0.331397375727916,2.6893005858071,0,3.65155045193687,1.95173119516203,1.96993692922861,4.28401451612931,4.38836610069323,0.572471974262113,0.547497700291537,1.50651167513763,0,0,0,0,0,0.77408061658038,0,0,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.36560687762909,7.03244090139417,12.2889311810753,6.51739283826656,14.0501123391999,8.74814541756209,6.32625331393427,1.89069634328136,5.76496433402666,4.0404001418838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,38.7638122322348,7.85109172320394,2.51577443545116,47.3280424235543,9.22137793715728,8.41016400213461,19.2148192313469,21.2134091638758,0.933633106199299,1.88594940897563,1.14423332179421,6.96244167166684,6.91411109375999,0,0.312160076830321,0,1.64393548606981,0.352303495931295,0.323745888736263,0.561803226808994,2.44985005505872,0.61417158655884,0.413303124703062,7.12801714369232,17.0614181202204,0.910161361938026,10.7792721272436,1.85169725349473,0.500474079487857,0,3.95079858792754,10.7270728529657,2.70428506031874,4.08355859376076,47.0000845504818,16.0168041613926,7.84148034290379,20.7062856298238,4.32820622801443,37.6155188466619,6.70020682793723,20.4219362011932,6.33340533547791,35.0882946199319,10.4936884452221,2.7479829659198,32.3058729190119,3.92933183087797,1.52604533079439,0,0,0,0,0,0.232387885739037,0.207322110030741,0.504641701751257,0,1.56449532329816,5.78916844373597,0,5.10804720835177,3.60939740834793,0.118306800039844,0,0,0,0,0,0,0,0,0,0,11.9356463286106,16.1709582524096,0,0,0,0,0,2.57351715447788,0,0,0,0.277765335475589,0,1.03993478527958,0,0.34779121492523,2.23076519048061,0,0,0,0,0,0,0,0,0,0.335964256397719,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,1.71072446022705,0.308482478109971,0,0,1.68196626518041,3.92364061949952,2.3468251462704,9.43683525031778,10.7296933755565,26.204385329236,7.44626726437637,3.12022310734098,1.28603687131071,1.41849132023278,2.39779961114489,19.1590511501918,37.4408907720096,6.58592269424615,9.12061316022458,20.6127330270677,6.33561498346743,1.50719688529793,0.871533458600294,1.09970290300263,0,0,0,16.2944901734276,22.9723871668228,2.85273810081437,3.4747513600219,3.90405012845728,0.358121926479791,0,0,0,0,0,0,0.773288812777695,0.502548796003046,0.637938751653163,0,0,0,1.96306386750624,6.00204625271613,1.35632511849868,66.7586465513891,59.2384242806577,29.9634588564476,13.2369798941766,10.5331134904702,9.09630016223939,5.17365356462525,11.9560607736379,5.34670588770939,2.43274120510632,5.67823356641948,8.23544217146054,0,0,0,1.5156378572313,11.6504807657348,7.25736703991233,22.8259183193275,17.8015889014152,49.676836714654,32.1629264631809,8.18731598506726,67.7195008014588,13.3576259800492,4.93471020168498,9.94345661753512,3.77784917663522,2.59627214591811,4.41599438147845,0,0.40101294060657,0,7.34812468253483,7.4657378882754,4.06485686374215,0,0.0770153371044148,0.784349769176855,0,0,0,0,0.215915916102139,0,2.43851793789468,4.01351819083883,0,0,0.223874754722178,0,0,0,0.328014645699706,0,0.103041011647722,1.73981983154852,1.40266149865,0.574265537996172,1.30012049207304,24.1025894766239,1.45006077438183,2.61882649094895,2.14905144616581,2.48105830472155,4.29680979473094,6.67076792005451,3.06815858697963,15.2244780955921,0,0.384380134730212,0.127612712494584,0,5.11330104227014,43.758916209459,2.7881490806424,2.46426864140871,1.06461206063404,0.869932992075073,1.29726953372744,0.858749320451947,3.34942532423701,4.74569137078089,6.29079639948622,3.58256907835867,3.85145089230528,1.59101623962968,2.35484592059769,6.65528093058265,9.33425901102586,3.65218447271628,2.83055474202642,1.58510321173008,1.68503382495592,8.28977356452303,3.89941583410055,0,3.13949796238367,16.261624674677,1.13008116620243,3.30819206127675,1.99031692572366,3.06915619677634,5.20897980840019,3.9353685122798,2.43492452355245,1.239293992399,3.09865162785466,2.43799298746888,9.03891177320715,1.426684205925,0.709522128141196,9.07762831779956,16.4647446479951,3.41525856389144,1.04980416073495,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0.427296284509893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13654458722565,0.23874448473769,1.78178808499583,0,0,0,0,0,0,0.597743964753209,0,0,0,0,11.8195043311487,0,0,0,0.197286811273867,0,0,0,0,0,0,0.0874599999961957,0,0,0,0,0.344743373241465,0,0.868124974666461,0,0.120596438625408,0,0,0,0,0,0.139423744278603,1.61595542857974,0.113942055847001,0,0,0.108647371922008,0.31900115973192,2.74792780205587,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0,3.05515072466813,0,0,0,0,12.0386647094818,0,0,0,0,0,6.04953580243319,0.3060727616304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| ||
|short_description=p23@COL1A1 | |short_description=p23@COL1A1 | ||
}} | }} |
Latest revision as of 23:29, 15 September 2015
Short description: | p23@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_23_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 178bp_to_M32798_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | P02452 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.26e-23 | 76 |
multi fate stem cell | 8.83e-21 | 427 |
somatic stem cell | 9.40e-20 | 433 |
muscle precursor cell | 4.06e-19 | 58 |
myoblast | 4.06e-19 | 58 |
multi-potent skeletal muscle stem cell | 4.06e-19 | 58 |
muscle cell | 8.38e-19 | 55 |
stem cell | 1.94e-18 | 441 |
electrically responsive cell | 1.82e-15 | 61 |
electrically active cell | 1.82e-15 | 61 |
smooth muscle cell | 2.59e-14 | 43 |
smooth muscle myoblast | 2.59e-14 | 43 |
preadipocyte | 2.27e-10 | 12 |
connective tissue cell | 9.13e-10 | 361 |
vascular associated smooth muscle cell | 1.13e-09 | 32 |
mesenchymal cell | 8.58e-09 | 354 |
stromal cell | 9.08e-09 | 28 |
extracellular matrix secreting cell | 3.57e-08 | 15 |
mesenchymal stem cell of adipose | 6.41e-08 | 8 |
extraembryonic cell | 6.98e-08 | 19 |
skin fibroblast | 9.93e-08 | 23 |
motile cell | 4.08e-07 | 386 |
mesodermal cell | 7.73e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 1.98e-19 | 62 |
striated muscle tissue | 1.98e-19 | 62 |
myotome | 1.98e-19 | 62 |
muscle tissue | 2.67e-18 | 64 |
musculature | 2.67e-18 | 64 |
musculature of body | 2.67e-18 | 64 |
dense mesenchyme tissue | 1.28e-17 | 73 |
somite | 2.41e-17 | 71 |
presomitic mesoderm | 2.41e-17 | 71 |
presumptive segmental plate | 2.41e-17 | 71 |
dermomyotome | 2.41e-17 | 71 |
trunk paraxial mesoderm | 2.41e-17 | 71 |
paraxial mesoderm | 7.23e-17 | 72 |
presumptive paraxial mesoderm | 7.23e-17 | 72 |
epithelial vesicle | 7.02e-16 | 78 |
multilaminar epithelium | 2.59e-14 | 83 |
trunk mesenchyme | 2.39e-10 | 122 |
connective tissue | 6.72e-10 | 371 |
mesenchyme | 5.92e-09 | 160 |
entire embryonic mesenchyme | 5.92e-09 | 160 |
adipose tissue | 3.06e-07 | 14 |
integument | 5.72e-07 | 46 |
integumental system | 5.72e-07 | 46 |
omentum | 6.05e-07 | 6 |
peritoneum | 6.05e-07 | 6 |
abdominal cavity | 6.05e-07 | 6 |
visceral peritoneum | 6.05e-07 | 6 |
unilaminar epithelium | 6.78e-07 | 148 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 6.90e-07 | 14 |