FFCP PHASE1:Hg19::chr1:175036966..175036974,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=63923 | |EntrezGene=63923 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22942 | |HGNC=22942 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UQP3,B3KXB6 | |UniProt=Q9UQP3,B3KXB6 | ||
|association_with_transcript=-19bp_to_ENST00000239462,NM_022093,uc001gkl.1_5end | |association_with_transcript=-19bp_to_ENST00000239462,NM_022093,uc001gkl.1_5end | ||
|cluster_id=chr1:175036966..175036974,+ | |||
|coexpression_cluster_id=C24 | |coexpression_cluster_id=C24 | ||
|description=CAGE_peak_1_at_TNN_5end | |description=CAGE_peak_1_at_TNN_5end | ||
|id=chr1:175036966..175036974,+ | |id=chr1:175036966..175036974,+ | ||
|ontology_enrichment_celltype=CL:0002322!1.33e-08!5 | |ontology_enrichment_celltype=CL:0002322!1.33e-08!5 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006242;5.85e-14;1!UBERON:0006298;1.10e-13;1!UBERON:0008814;1.75e-07;2!UBERON:0010056;1.75e-07;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.75e-32!115;UBERON:0001049!2.37e-13!57;UBERON:0005068!2.37e-13!57;UBERON:0006241!2.37e-13!57;UBERON:0007135!2.37e-13!57;UBERON:0005743!1.52e-12!86;UBERON:0003296!2.60e-12!4;UBERON:0010133!2.60e-12!4;UBERON:0001017!4.22e-12!82;UBERON:0003075!1.36e-11!86;UBERON:0007284!1.36e-11!86;UBERON:0002346!8.05e-11!90;UBERON:0000073!8.50e-11!94;UBERON:0001016!8.50e-11!94;UBERON:0000153!1.26e-10!129;UBERON:0007811!1.26e-10!129;UBERON:0003080!2.02e-10!42;UBERON:0001894!3.63e-10!7;UBERON:0006222!3.63e-10!7;UBERON:0002616!7.62e-10!59;UBERON:0002780!3.95e-09!41;UBERON:0001890!3.95e-09!41;UBERON:0006240!3.95e-09!41;UBERON:0000955!1.01e-08!69;UBERON:0006238!1.01e-08!69;UBERON:0004121!6.02e-08!169;UBERON:0000033!6.40e-08!123;UBERON:0000924!1.34e-07!173;UBERON:0006601!1.34e-07!173;UBERON:0001905!2.33e-07!2;UBERON:0002757!2.33e-07!2;UBERON:0010134!2.33e-07!2;UBERON:0002784!2.33e-07!2;UBERON:0005408!2.33e-07!2;UBERON:0001899!2.33e-07!2;UBERON:0003056!2.90e-07!61;UBERON:0000341!9.10e-07!2 | |ontology_enrichment_uberon=UBERON:0007023!2.75e-32!115;UBERON:0001049!2.37e-13!57;UBERON:0005068!2.37e-13!57;UBERON:0006241!2.37e-13!57;UBERON:0007135!2.37e-13!57;UBERON:0005743!1.52e-12!86;UBERON:0003296!2.60e-12!4;UBERON:0010133!2.60e-12!4;UBERON:0001017!4.22e-12!82;UBERON:0003075!1.36e-11!86;UBERON:0007284!1.36e-11!86;UBERON:0002346!8.05e-11!90;UBERON:0000073!8.50e-11!94;UBERON:0001016!8.50e-11!94;UBERON:0000153!1.26e-10!129;UBERON:0007811!1.26e-10!129;UBERON:0003080!2.02e-10!42;UBERON:0001894!3.63e-10!7;UBERON:0006222!3.63e-10!7;UBERON:0002616!7.62e-10!59;UBERON:0002780!3.95e-09!41;UBERON:0001890!3.95e-09!41;UBERON:0006240!3.95e-09!41;UBERON:0000955!1.01e-08!69;UBERON:0006238!1.01e-08!69;UBERON:0004121!6.02e-08!169;UBERON:0000033!6.40e-08!123;UBERON:0000924!1.34e-07!173;UBERON:0006601!1.34e-07!173;UBERON:0001905!2.33e-07!2;UBERON:0002757!2.33e-07!2;UBERON:0010134!2.33e-07!2;UBERON:0002784!2.33e-07!2;UBERON:0005408!2.33e-07!2;UBERON:0001899!2.33e-07!2;UBERON:0003056!2.90e-07!61;UBERON:0000341!9.10e-07!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0001905;1.29e-26;2!UBERON:0002757;1.29e-26;2!UBERON:0010134;1.29e-26;2!UBERON:0005408;1.29e-26;2!UBERON:0001899;1.29e-26;2!UBERON:0001723;1.08e-17;3!UBERON:0001033;1.08e-17;3!UBERON:0003296;8.06e-14;4!UBERON:0010133;8.06e-14;4!UBERON:0002784;8.06e-14;4!UBERON:0001736;1.10e-13;1!UBERON:0007029;1.83e-13;1!UBERON:0000020;6.22e-09;23!UBERON:0001032;1.44e-08;24!UBERON:0004456;1.44e-08;24!UBERON:0001894;2.78e-08;7!UBERON:0000341;1.36e-07;2!UBERON:0003127;1.75e-07;2!UBERON:0001829;1.75e-07;2!UBERON:0000922;3.61e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,1.29e-26,2;UBERON:0002757,1.29e-26,2;UBERON:0010134,1.29e-26,2;UBERON:0005408,1.29e-26,2;UBERON:0001899,1.29e-26,2;UBERON:0001723,1.18e-17,3;UBERON:0001033,1.18e-17,3;UBERON:0010056,1.18e-17,3;UBERON:0003296,8.06e-14,4;UBERON:0010133,8.06e-14,4;UBERON:0002784,8.06e-14,4;UBERON:0001736,1.10e-13,1;UBERON:0006298,1.10e-13,1;UBERON:0007029,1.61e-13,1;UBERON:0000020,1.47e-08,24;UBERON:0001032,1.47e-08,24;UBERON:0004456,1.47e-08,24;UBERON:0001894,2.78e-08,7;UBERON:0006222,2.78e-08,7;UBERON:0000341,1.36e-07,2;UBERON:0003127,1.54e-07,2;UBERON:0001829,1.75e-07,2;UBERON:0008814,8.00e-07,18 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0.518305275076852,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0.43596006883328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,2.89999830173917,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0.219385397153973,0,0,0.0769502585037971,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0.61214552326098,0.758238955541855,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,8.13530666809917,0,0,0.0633107959558787,0,0,5.33632486848381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0.223171457441873,0.0671834724867263,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0.0607495566580247,0,0,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0.157204305099666,0.828478110694391,0,0,0,0,0,1.0027595760908,0,0.983617892129413,0,0,0,0.250381861413,0,0.221858103073705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0.0691572524642179,0.322951291263702,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0,19.2852660916183,16.8141861109412,0.606965604236632,0.227662191351298,0,0,0,0,0,0,0,0,0,0,0,0,0,1.85839014859306,0,0,0,0,0,0,0,0.860454717640555,0,0,0,0,0,0,0,0,0,0,0,2.3196288626764,1.94284397223656,0,0,0,0,0,0,0.308696632431779,0,0,0.245148321753905,0,0,0.297046400327086,12.2570160999186,0,0,0.0644578879735772,0,0,0,0,0,2.75237570042724,0,0,0.0679914901909147,0.436350690340377,0,0,0,0,0.126166424835079,0,0,0,0,0,0,0,0,0,0.103432995861895,0.213233981900981,4.76128862927481,0.0645889098360061,0.0620747142958579,0,0.12729431655633,3.63810940124795,2.61260097476354,13.6893320434112,0.0673520530145875,0.143444410785353,2.99394320891412,0,0,0,0,0,0,0.406896178315738,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0.518305275076852,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0.43596006883328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,2.89999830173917,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0.219385397153973,0,0,0.0769502585037971,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0.61214552326098,0.758238955541855,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,8.13530666809917,0,0,0.0633107959558787,0,0,5.33632486848381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0.223171457441873,0.0671834724867263,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0.0607495566580247,0,0,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0.157204305099666,0.828478110694391,0,0,0,0,0,1.0027595760908,0,0.983617892129413,0,0,0,0.250381861413,0,0.221858103073705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0.0691572524642179,0.322951291263702,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0,19.2852660916183,16.8141861109412,0.606965604236632,0.227662191351298,0,0,0,0,0,0,0,0,0,0,0,0,0,1.85839014859306,0,0,0,0,0,0,0,0.860454717640555,0,0,0,0,0,0,0,0,0,0,0,2.3196288626764,1.94284397223656,0,0,0,0,0,0,0.308696632431779,0,0,0.245148321753905,0,0,0.297046400327086,12.2570160999186,0,0,0.0644578879735772,0,0,0,0,0,2.75237570042724,0,0,0.0679914901909147,0.436350690340377,0,0,0,0,0.126166424835079,0,0,0,0,0,0,0,0,0,0.103432995861895,0.213233981900981,4.76128862927481,0.0645889098360061,0.0620747142958579,0,0.12729431655633,3.63810940124795,2.61260097476354,13.6893320434112,0.0673520530145875,0.143444410785353,2.99394320891412,0,0,0,0,0,0,0.406896178315738,0,0.201273793591026,0 | ||
|short_description=p1@TNN | |short_description=p1@TNN | ||
}} | }} |
Latest revision as of 19:38, 18 September 2015
Short description: | p1@TNN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TNN_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | -19bp_to_ENST00000239462, NM_022093, uc001gkl.1_5end |
EntrezGene: | TNN |
HGNC: | 22942 |
UniProt: | Q9UQP3B3KXB6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 1.29e-26 | 2 |
regional part of epithalamus | 1.29e-26 | 2 |
secretory circumventricular organ | 1.29e-26 | 2 |
circumventricular organ | 1.29e-26 | 2 |
epithalamus | 1.29e-26 | 2 |
tongue | 1.18e-17 | 3 |
gustatory system | 1.18e-17 | 3 |
future tongue | 1.18e-17 | 3 |
gland of diencephalon | 8.06e-14 | 4 |
neuroendocrine gland | 8.06e-14 | 4 |
regional part of diencephalon | 8.06e-14 | 4 |
submandibular gland | 1.10e-13 | 1 |
submandibular gland primordium | 1.10e-13 | 1 |
surface | 1.61e-13 | 1 |
sense organ | 1.47e-08 | 24 |
sensory system | 1.47e-08 | 24 |
entire sense organ system | 1.47e-08 | 24 |
diencephalon | 2.78e-08 | 7 |
future diencephalon | 2.78e-08 | 7 |
throat | 1.36e-07 | 2 |
open tracheal system trachea | 1.54e-07 | 2 |
major salivary gland | 1.75e-07 | 2 |
pharyngeal arch system | 8.00e-07 | 18 |