FFCP PHASE1:Hg19::chr1:1850703..1850724,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=339456 | |EntrezGene=339456 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27916 | |HGNC=27916 | ||
|TSSclassifier=strong | |||
|UniProt=Q8NDY8,B1AKR3 | |UniProt=Q8NDY8,B1AKR3 | ||
|association_with_transcript=0bp_to_ENST00000310991,ENST00000416272_5end | |association_with_transcript=0bp_to_ENST00000310991,ENST00000416272_5end | ||
|cluster_id=chr1:1850703..1850724,- | |||
|coexpression_cluster_id=C31 | |coexpression_cluster_id=C31 | ||
|description=CAGE_peak_1_at_TMEM52_5end | |description=CAGE_peak_1_at_TMEM52_5end | ||
|id=chr1:1850703..1850724,- | |id=chr1:1850703..1850724,- | ||
|ontology_enrichment_celltype=CL:0000066!6.04e-08!254 | |ontology_enrichment_celltype=CL:0000066!6.04e-08!254 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.14e-07,253 | |||
|ontology_enrichment_development_v019=UBERON:0003104;1.41e-07;31!UBERON:0009117;1.67e-07;10!UBERON:0005564;1.67e-07;10 | |||
|ontology_enrichment_disease=DOID:0050687!5.59e-11!143;DOID:305!2.54e-09!106;DOID:162!9.12e-07!235 | |ontology_enrichment_disease=DOID:0050687!5.59e-11!143;DOID:305!2.54e-09!106;DOID:162!9.12e-07!235 | ||
|ontology_enrichment_disease_v019=DOID:3095;7.74e-08;22!DOID:2994;7.74e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,9.51e-11,143;DOID:305,1.66e-09,106;DOID:3095,1.06e-07,22;DOID:2994,1.06e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0005177!1.67e-10!107;UBERON:0004119!2.53e-10!169;UBERON:0000925!2.53e-10!169;UBERON:0006595!2.53e-10!169;UBERON:0001007!3.33e-10!155;UBERON:0001555!3.33e-10!155;UBERON:0007026!3.33e-10!155;UBERON:0004921!3.66e-10!129;UBERON:0004185!3.66e-10!129;UBERON:0000466!1.71e-08!126;UBERON:0000481!7.22e-08!347;UBERON:0000077!9.62e-08!130;UBERON:0001041!1.66e-07!98;UBERON:0000464!1.87e-07!104 | |ontology_enrichment_uberon=UBERON:0005177!1.67e-10!107;UBERON:0004119!2.53e-10!169;UBERON:0000925!2.53e-10!169;UBERON:0006595!2.53e-10!169;UBERON:0001007!3.33e-10!155;UBERON:0001555!3.33e-10!155;UBERON:0007026!3.33e-10!155;UBERON:0004921!3.66e-10!129;UBERON:0004185!3.66e-10!129;UBERON:0000466!1.71e-08!126;UBERON:0000481!7.22e-08!347;UBERON:0000077!9.62e-08!130;UBERON:0001041!1.66e-07!98;UBERON:0000464!1.87e-07!104 | ||
|ontology_enrichment_uberon_v019=UBERON:0000922;4.92e-08;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005177,4.72e-09,101;UBERON:0004119,1.75e-07,160;UBERON:0000925,1.75e-07,160;UBERON:0006595,1.75e-07,160;UBERON:0001007,4.30e-07,145;UBERON:0001555,4.30e-07,145;UBERON:0007026,4.30e-07,145;UBERON:0009569,5.09e-07,112;UBERON:0004921,8.62e-07,118 | |||
|phase1_expression=0,0.428201047781966,0,0,0,0,0,0,1.04474251279935,0.491467873003018,10.4670175195864,0.655324116390517,1.05506791291381,0.618831764800233,0.994192127183747,0,0,0,0,1.23121058076788,1.42800483870977,0.313454721478088,0.572471974262113,1.09499540058307,1.25542639594803,0,0,0,0,0.767658796194425,0.619264493264304,1.83884244895785,1.8072355126695,1.10926203050036,0.46480320348181,4.97592313705975,0,0,0,0,0,0,0,0,0,0.242584061187816,0.232429036905685,0,0,0,0,0.236482229888585,0,0,0,0.188242339542605,0,0.449446968890169,0,0.962787081228281,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0.736555271975129,0.632924774881769,0.211255286311942,0.212604299965044,0.209658645508376,0,0,0,0.570025487482497,0,0,0,0,0,0,0,0,0,0.954053754535364,0,0,0.764546456250458,0,0,0,0.196709770113833,0.786021525498329,0.616804496998528,0,0.651844533267181,0,0,0.111410456885174,0,0,0,0.128091319725675,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0.950452044448374,0,0.127986611154418,0,0,0,0.403213486449465,0.267440195783507,0.724122019413995,0,0,0.255725123687061,0.361439152384566,0,0.434539556882471,0,0,0.378139268656271,0.886917589850256,0.790513071238134,6.48346423713678,2.5500670180478,0,0.324547393654683,0.870648686496336,0.531831842075461,0.715471872916026,0,0,1.59009925893364,0,0,0.56530794192401,0.838998872419812,0.825354125820202,0.417989933073621,0.258416759169329,0,0,0,0,0,0.735326160691737,0.81014194788176,0.357198913136319,0.673588117878509,1.0135033243499,0,0,1.46561395144326,1.31780417436063,3.87780264148325,0.872188104285069,0,0.25326102332916,0.132409180813219,0,0.354668382198357,0.560677600142307,0,0.74000264525148,0.933633106199299,0.134710672069688,0.163461903113459,0.302714855289863,1.72852777344,1.17160715916898,0.624320153660641,0.570471821544449,0.896692083310806,0.704606991862589,0.485618833104395,0.842704840213491,1.63323337003915,0.737005903870608,1.13658359293342,0,0,0,0,1.17835279767846,1.00094815897571,0,0.438977620880838,0,0,0.453728732640084,0,0.213557388818567,0.211931901159562,0.600182192168805,0.618315175430633,0.772921620136887,1.30281799432113,0,0.0974370051611986,0.252433774244115,0.368199594569197,0,0,0,0.169560592310488,1.54608682530637,0.272746120590835,0.286804595389004,3.17131635936948,2.51806559810822,2.32387885739037,3.21349270547648,3.28017106138317,2.55484151353081,0,0,0,0,0,0.118306800039844,0.168584690078102,0.482022059766964,0.110293972732394,0.217879444092406,0.237270619111097,0.539325232640658,0.588664395376038,0,0,0,0.8231480226628,5.88034845542168,2.53510069643662,0,1.77236972004421,0,1.72183813960359,0.857839051492628,0.219500570817251,1.1240175325762,0.703702806881416,1.01847289674383,0.325808305310325,5.19967392639789,1.44331342025273,0.579652024875384,0.234817388471643,0,0.925971025153221,0,3.1608175918371,5.15091697256924,0.246217006087397,0.702012795417713,0.891786973732369,0,0.16798212819886,0.425325291727159,0.447792613514241,0,1.15014803749563,0.985326475791887,0.264145302039678,0.829312462163088,0.288239906833923,0.6312121671319,0.126995788584338,0.381988425558278,0,1.71072446022705,0.205654985406647,0,0,0.672786506072164,0.43596006883328,0.95339771567235,0.258543431515556,0,1.690605505112,0,1.04007436911366,0,0,0.799266537048298,0.428933980974443,0,0,0.977208552881205,0,0,0,0,0.399891964728228,1.2162378064119,0,0,0,1.14861935834114,0,0.144781306667579,0.205476322550383,0,0.560425719967636,0.197030760201927,0.431255149719035,0.513372145118994,0.254094624222463,0,2.31986643833309,0.335032530668698,1.27587750330633,0,0,0,0,0,1.35632511849868,0,0.356857977594324,0.157702415033935,0.468565659970853,0.300946099727719,0,0,0.664225598535437,0,0.60818530127658,0,0.343143423810856,0,0,0.533637789017222,1.5156378572313,0,2.41912234663744,0,0,0,0.640695746278505,0,0,0,0.308419387605311,0,0.164254312027618,0,0,2.41718899183244,0,0.920809889358963,0.229628896329213,0.364182336013434,0.262248829918848,1.35359883872224,0.616122696835318,7.0591479225917,0,0.527758144464379,0,0.680374821106063,0.215915916102139,3.08454505380579,1.08378575017541,1.50506932156456,1.78413391131527,1.66215201785745,1.56712328305525,0,0,3.07740150139667,0.656029291399411,0.325378394664303,2.88514832613622,1.28197250745681,1.65018999841176,0,1.30012049207304,0,0.580024309752732,1.54048617114644,1.07452572308291,1.10269257987624,0.107420244868274,0.870100163485371,1.02271952899321,0.623224249527161,0.165284915360978,0.384380134730212,0,1.4162089319777,0.929691098594572,0.31481234683064,0,0,0,0.869932992075073,0.55597265731176,0,0,0.632758849437452,0.190630193923825,0.767693373934002,0,0.318203247925937,0,0.359744915166629,0.274537029736055,0.117812402345686,0.404364963146632,0,0,1.46290121726877,0,0,0.545999645631943,0,1.13008116620243,0.551365343546124,0,0,1.15755106853338,0,0,0.6196469961995,0.563391205064483,0.286822704408103,0.196498082026242,0,0.354761064070598,1.05553817648832,0.987884678879706,1.89736586882858,1.74967360122491,0.769776901804097,0.670302275535787,0,3.10674542563371,0,1.68471475667626,1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| ||
|short_description=p1@TMEM52 | |short_description=p1@TMEM52 | ||
}} | }} |
Latest revision as of 05:57, 19 September 2015
Short description: | p1@TMEM52 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TMEM52_5end |
Coexpression cluster: | C31_skeletal_tongue_diaphragm_throat_penis_skin_trachea |
Association with transcript: | 0bp_to_ENST00000310991, ENST00000416272_5end |
EntrezGene: | TMEM52 |
HGNC: | 27916 |
UniProt: | Q8NDY8B1AKR3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.14e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
trunk region element | 4.72e-09 | 101 |
endoderm-derived structure | 1.75e-07 | 160 |
endoderm | 1.75e-07 | 160 |
presumptive endoderm | 1.75e-07 | 160 |
digestive system | 4.30e-07 | 145 |
digestive tract | 4.30e-07 | 145 |
primitive gut | 4.30e-07 | 145 |
subdivision of trunk | 5.09e-07 | 112 |
subdivision of digestive tract | 8.62e-07 | 118 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 9.51e-11 | 143 |
carcinoma | 1.66e-09 | 106 |
germ cell and embryonal cancer | 1.06e-07 | 22 |
germ cell cancer | 1.06e-07 | 22 |