FFCP PHASE1:Hg19::chr4:175443138..175443164,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3248 | |EntrezGene=3248 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5154 | |HGNC=5154 | ||
|TSSclassifier=strong | |||
|UniProt=D6RA66 | |UniProt=D6RA66 | ||
|association_with_transcript=319bp_to_ENST00000514584_5end | |association_with_transcript=319bp_to_ENST00000514584_5end | ||
|cluster_id=chr4:175443138..175443164,- | |||
|coexpression_cluster_id=C2787 | |coexpression_cluster_id=C2787 | ||
|description=CAGE_peak_5_at_HPGD_5end | |description=CAGE_peak_5_at_HPGD_5end | ||
|id=chr4:175443138..175443164,- | |id=chr4:175443138..175443164,- | ||
|ontology_enrichment_celltype=CL:0002274!9.67e-11!5;CL:0000457!9.67e-11!5;CL:0002191!9.67e-11!5;CL:0000097!9.67e-11!5;CL:0000831!9.67e-11!5;CL:0002028!9.67e-11!5;CL:0002541!1.41e-07!3;CL:0002623!8.72e-07!3 | |ontology_enrichment_celltype=CL:0002274!9.67e-11!5;CL:0000457!9.67e-11!5;CL:0002191!9.67e-11!5;CL:0000097!9.67e-11!5;CL:0000831!9.67e-11!5;CL:0002028!9.67e-11!5;CL:0002541!1.41e-07!3;CL:0002623!8.72e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002541;1.93e-19;3!CL:0000097;8.11e-12;5!CL:0002623;4.24e-09;3!CL:0002251;3.43e-07;20!CL:0000163;9.42e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,1.88e-19,3;CL:0000097,8.74e-12,5;CL:0002028,8.74e-12,5;CL:0002623,3.92e-09,3;CL:0002251,3.81e-07,20;CL:0000163,9.81e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0003124;1.91e-07;1!UBERON:0006242;4.20e-07;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:8552;1.49e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:8552,1.54e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0004921!1.99e-12!129;UBERON:0004185!1.99e-12!129;UBERON:0001007!8.71e-11!155;UBERON:0001555!8.71e-11!155;UBERON:0007026!8.71e-11!155;UBERON:0004119!2.21e-10!169;UBERON:0000925!2.21e-10!169;UBERON:0006595!2.21e-10!169;UBERON:0000077!8.28e-10!130;UBERON:0000476!1.41e-07!3;UBERON:0000920!1.41e-07!3;UBERON:0005409!2.58e-07!35;UBERON:0001041!7.41e-07!98 | |ontology_enrichment_uberon=UBERON:0004921!1.99e-12!129;UBERON:0004185!1.99e-12!129;UBERON:0001007!8.71e-11!155;UBERON:0001555!8.71e-11!155;UBERON:0007026!8.71e-11!155;UBERON:0004119!2.21e-10!169;UBERON:0000925!2.21e-10!169;UBERON:0006595!2.21e-10!169;UBERON:0000077!8.28e-10!130;UBERON:0000476!1.41e-07!3;UBERON:0000920!1.41e-07!3;UBERON:0005409!2.58e-07!35;UBERON:0001041!7.41e-07!98 | ||
|ontology_enrichment_uberon_v019=UBERON:0005409;1.34e-23;22!UBERON:0000160;1.10e-19;17!UBERON:0003124;1.93e-19;3!UBERON:0000920;1.93e-19;3!UBERON:0004921;3.22e-19;33!UBERON:0002108;2.88e-11;4!UBERON:0000059;1.05e-08;11!UBERON:0002110;1.19e-08;3!UBERON:0001555;1.92e-07;54!UBERON:0001041;6.02e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,1.44e-20,25;UBERON:0000160,1.66e-19,17;UBERON:0000920,1.88e-19,3;UBERON:0003124,1.97e-14,7;UBERON:0002108,5.14e-11,4;UBERON:0002110,6.86e-09,3;UBERON:0006242,6.86e-09,3;UBERON:0000059,9.94e-09,11;UBERON:0001007,4.91e-08,145;UBERON:0001555,4.91e-08,145;UBERON:0007026,4.91e-08,145;UBERON:0004119,5.02e-08,160;UBERON:0000925,5.02e-08,160;UBERON:0006595,5.02e-08,160;UBERON:0004921,5.69e-08,118;UBERON:0005631,2.96e-07,14;UBERON:0000158,2.96e-07,14 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18009283054671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0,0,0,0,0,0,0.445641827540694,0.589211814949674,0.443067789167242,0.541607727530031,0.25618263945135,0.780356085359269,0,0.276350017785848,0.289803085735052,0,0,0,0,0,0,0,0,0,0.950452044448374,0,0,0,0.236777252044017,0.821127996921047,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0.207322110030741,0,0,0,0,0,0,0,0.118306800039844,0.168584690078102,0,0,0,0,0,0.196221465125346,0.38474715694639,0,0,0,0,0,1.96565443335525,0,0,1.22988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,9.85326475791887,4.66656700270098,0.829312462163088,2.01767934783746,0.50496973370552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.725156697549733,0,0.276242966807689,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,1.23649213977267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159426272728822,0,0,0.635020748171649,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,6.96015434738106,0,0,0,0,0.37428108081644,0,0,0,0,0.71623345421307,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0.179021174675609,0,0.197286811273867,0,0,0,0,0,0,0,0,0.1137934482855,0.254253650292766,0.236387681767936,0,0,0,0,0,0,0,0,0,0,3.90386483980089,0.384751292518985,0,0,0,0,7.65602783356607,2.28993983504656,12.2597998484286,0,0,3.65665700180344,0,0,0,0,0.953619473882272,0,0,1.13082457147153,0,0,1.41532103205343,2.4441205797345,0,0,0.104421949505455,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0.872901148395775,0,0,0,0,0,1.75996244461323,0,1.49417096317547,0,1.29681375438695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,0,0,0,0.295282444544246,0,0,0,0.160753148465019,0,0.415440338029185,0.674921674654501,0,0,0.335434687599266,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,1.80603545648546,0,0,0.58620893471233,0,0,0,1.36869470307464,0,0.320362237703084,0,0.414239055347196,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157723490002507,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0.591424344868181,0,0,0,0,0,0,0,0,0,0,0,0.606965604236632,0,2.04015451374069,0,0,0,0,0,0.556157009460346,0.156986185701028,0,1.40136081656895,0,0,0,0,0,1.3948971044175,0,0,0.207216164163037,2.7314956335032,2.07377898544228,0,0,0,0,0,0,0,0,0.098150233615243,0.975343399858155,0,0,0,0.485710993059139,0,0,0,0,0,0,4.3217528540449,1.09279780251979,0,0,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,1.46067277649303,0,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,1.01084389488329,0.250707539292375,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0.435433495793923,0,0.134704106029175,0.0717222053926763,0,0,0,0,0.0898252021065869,0,0.122241444182866,0,0,0,0 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| ||
|short_description=p5@HPGD | |short_description=p5@HPGD | ||
}} | }} |
Latest revision as of 20:45, 16 September 2015
Short description: | p5@HPGD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_HPGD_5end |
Coexpression cluster: | C2787_chorionic_Mast_small_acute_chronic_colon_testicular |
Association with transcript: | 319bp_to_ENST00000514584_5end |
EntrezGene: | HPGD |
HGNC: | 5154 |
UniProt: | D6RA66 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 1.88e-19 | 3 |
mast cell | 8.74e-12 | 5 |
basophil mast progenitor cell | 8.74e-12 | 5 |
acinar cell of salivary gland | 3.92e-09 | 3 |
epithelial cell of alimentary canal | 3.81e-07 | 20 |
endocrine cell | 9.81e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 1.44e-20 | 25 |
intestine | 1.66e-19 | 17 |
egg chorion | 1.88e-19 | 3 |
chorion | 1.97e-14 | 7 |
small intestine | 5.14e-11 | 4 |
gallbladder | 6.86e-09 | 3 |
gall bladder primordium | 6.86e-09 | 3 |
large intestine | 9.94e-09 | 11 |
digestive system | 4.91e-08 | 145 |
digestive tract | 4.91e-08 | 145 |
primitive gut | 4.91e-08 | 145 |
endoderm-derived structure | 5.02e-08 | 160 |
endoderm | 5.02e-08 | 160 |
presumptive endoderm | 5.02e-08 | 160 |
subdivision of digestive tract | 5.69e-08 | 118 |
extraembryonic membrane | 2.96e-07 | 14 |
membranous layer | 2.96e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
chronic myeloid leukemia | 1.54e-07 | 1 |