FFCP PHASE1:Hg19::chr7:44530457..44530473,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23386 | |EntrezGene=23386 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22208 | |HGNC=22208 | ||
|TSSclassifier=strong | |||
|UniProt=Q8IVD9 | |UniProt=Q8IVD9 | ||
|association_with_transcript=5bp_to_ENST00000355451_5end | |association_with_transcript=5bp_to_ENST00000355451_5end | ||
|cluster_id=chr7:44530457..44530473,- | |||
|coexpression_cluster_id=C23 | |coexpression_cluster_id=C23 | ||
|description=CAGE_peak_4_at_NUDCD3_5end | |description=CAGE_peak_4_at_NUDCD3_5end | ||
|id=chr7:44530457..44530473,- | |id=chr7:44530457..44530473,- | ||
|ontology_enrichment_celltype=CL:0000738!1.80e-16!140;CL:0000037!2.20e-16!172;CL:0000566!2.20e-16!172;CL:0002087!3.74e-16!119;CL:0000838!5.67e-15!52;CL:0000542!5.70e-15!53;CL:0000051!5.70e-15!53;CL:0000988!8.36e-15!182;CL:0002032!1.44e-13!165;CL:0000837!1.44e-13!165;CL:0002031!1.65e-13!124;CL:0000791!1.23e-12!18;CL:0000789!1.23e-12!18;CL:0002420!1.23e-12!18;CL:0002419!1.23e-12!18;CL:0000790!1.23e-12!18;CL:0000084!8.26e-11!25;CL:0000827!8.26e-11!25;CL:0000625!2.64e-09!11;CL:0000236!1.62e-08!14 | |ontology_enrichment_celltype=CL:0000738!1.80e-16!140;CL:0000037!2.20e-16!172;CL:0000566!2.20e-16!172;CL:0002087!3.74e-16!119;CL:0000838!5.67e-15!52;CL:0000542!5.70e-15!53;CL:0000051!5.70e-15!53;CL:0000988!8.36e-15!182;CL:0002032!1.44e-13!165;CL:0000837!1.44e-13!165;CL:0002031!1.65e-13!124;CL:0000791!1.23e-12!18;CL:0000789!1.23e-12!18;CL:0002420!1.23e-12!18;CL:0002419!1.23e-12!18;CL:0000790!1.23e-12!18;CL:0000084!8.26e-11!25;CL:0000827!8.26e-11!25;CL:0000625!2.64e-09!11;CL:0000236!1.62e-08!14 | ||
|ontology_enrichment_celltype_v019=CL:0000791;8.32e-36;18!CL:0000789;8.32e-36;18!CL:0002419;8.32e-36;18!CL:0000084;2.21e-30;25!CL:0000625;2.39e-24;11!CL:0000542;1.81e-21;53!CL:0000624;1.68e-15;6!CL:0000236;9.84e-10;13!CL:0000898;1.48e-08;3!CL:0000623;3.52e-08;3!CL:0000226;5.81e-08;3!CL:0000842;5.81e-08;3!CL:0002087;4.21e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,7.42e-36,18;CL:0000789,7.42e-36,18;CL:0002420,7.42e-36,18;CL:0002419,7.42e-36,18;CL:0000790,7.42e-36,18;CL:0000838,2.31e-35,52;CL:0000542,1.64e-34,53;CL:0000051,1.64e-34,53;CL:0000084,2.04e-30,25;CL:0000827,2.04e-30,25;CL:0000625,2.00e-24,11;CL:0002087,3.53e-22,115;CL:0000738,1.81e-21,136;CL:0000037,6.29e-19,168;CL:0000988,2.66e-17,177;CL:0002031,6.31e-17,120;CL:0000624,1.79e-15,6;CL:0002032,6.58e-15,161;CL:0000837,6.58e-15,161;CL:0000236,4.05e-09,14;CL:0000898,1.49e-08,3;CL:0000623,3.76e-08,3;CL:0000825,3.76e-08,3;CL:0000226,5.72e-08,3;CL:0000842,5.72e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000790;8.32e-36;18!CL:0000051;1.81e-21;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0000369;5.73e-09;4!UBERON:0002435;5.73e-09;4!UBERON:0000204;5.73e-09;4!UBERON:0005383;5.10e-07;3!UBERON:0005382;5.10e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000369,2.22e-09,4;UBERON:0002435,2.22e-09,4;UBERON:0000204,2.22e-09,4;UBERON:0010082,2.22e-09,4;UBERON:0005383,2.12e-07,3;UBERON:0005382,2.12e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0.491467873003018,0,0,0,0,0,0,0,0,0.487932798790507,0,0,0,0,0,0.125542639594803,0,0,0,0.393364276848904,1.15148819429164,1.08371286321253,0,0.30120591877825,0,1.08454080812422,0,2.05520307534393,2.21598163412751,2.4065333696417,1.95309783644267,0.895661896959697,0.971680998056939,0,0.436194716338694,0.755751887377619,0.242584061187816,0.232429036905685,1.23350366406548,0.309706370895104,0,0.256160706529101,0.236482229888585,0,0,1.35426486594342,0.188242339542605,0.272906150057846,0.224723484445085,0,0.641858054152187,0,0.329851300186716,0.199463657621632,0.426224750532694,0.580418477257168,0.56738522469114,0.622822248995575,0.502497330513487,1.0429658368404,0.217188844705117,0,0.368277635987565,0.632924774881769,0.211255286311942,0.212604299965044,0.838634582033504,0.336985893439485,0.150176892841506,0.16072558669708,0.285012743741249,0,0.365328307529268,1.75996244461323,2.18455444504853,0.889509253863555,2.98711155796555,0.400395987036012,1.72425731986345,1.32208974556972,0.954053754535364,4.55370375287559,4.11066032559657,4.96955196562797,1.32171328579026,1.68152568894461,0.526768169550154,13.1795545976268,17.2924735609632,12.130488440971,2.17342444007882,14.0146574652444,17.5175688121851,17.534405556712,1.33692548262208,10.3112067616193,7.08908462667588,7.85331204918545,2.0494611156108,1.8208308658383,1.31550323682941,1.10540007114339,1.15921234294021,12.7526444319372,11.5042556078577,6.27213142829861,1.92625882585863,12.2630557952615,8.24705869158312,6.83153168452658,3.50421955756506,3.25541726928209,5.70271226669025,4.36667845325541,2.17577238962511,3.74792179657038,1.65744076430812,6.56902397536837,6.65302252641617,7.2208852861547,9.12393744461634,0,0,0.12786256184353,0.361439152384566,0,0,0,0,0.0945348171640679,0.221729397462564,0,0.130979075497713,0,0,0.324547393654683,0.174129737299267,0,1.19245312152671,3.43196946468077,0.371457501329565,0.79504962946682,0,0.694281003215189,0.56530794192401,0.838998872419812,0.275118041940067,1.04497483268405,0,0.35576626268671,0,0,0,0.976248230192678,0,0.81014194788176,0.714397826272638,0,0,0,0.949265659568129,0.549605231791222,1.31780417436063,0,0.436094052142534,0.496971951695318,0.12663051166458,0.264818361626438,0,0,0,0,0,0.622422070799533,0,0.326923806226917,0,0,0,0,0,0.149448680551801,0,0,0.140450806702248,0.204154171254893,0,0,0,0,0,0,0.505008341862199,0.125118519871964,0.277064115484183,0,0.30648779579902,0.150238058906597,0.340296549480063,0.358779271377724,0,0.211931901159562,0.300091096084402,0.103052529238439,0,0.18611685633159,0,0.0974370051611986,0.252433774244115,0.276149695926898,0,0.355009592516614,0.10075209822764,0,0.193260853163297,0,0,0,0,0.116193942869518,0,0,0,0,0.643240938192885,0,0,0.721879481669586,0,0,0,0,0,0.237270619111097,0,0,0,0.738155454624648,0,0.8231480226628,0,0,0,0,0.882926198829301,0.122988438543114,0.343135620597051,0,0,0.100528972411631,0,0,0,0,0,0,0,0.462985512576611,0,0,1.71697232418975,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0.207328115540772,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0.112131084345361,0,0.1466765716419,0,0,0,0,0,0.257207374262142,1.41849132023278,0.266422179016099,0,0,0,0.65147236858747,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0.205476322550383,0,0,6.10795356625974,7.54696512008311,5.39040752374943,0,0,0,0.502548796003046,0,0.749007023947182,0,0,0.12269149171914,0,0,0.207970861530807,0.178428988797162,0,0,0.300946099727719,0,1.03473071292505,0,0,0.0868836144680828,0,0,6.40980880980951,4.96142661882819,3.73546452312055,0,0,0,0.248107807818777,0.153461973288062,0,0,0,0.160853921143607,0,0,0,0,0,0,0.120859449591622,0,0,0.229628896329213,0,0.131124414959424,0,0.0770153371044148,0,0,0,2.27466768141793,0.680374821106063,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0.183138929636687,0.082509499920588,0,0.650060246036521,0,0.290012154876366,0,0,0,0,0,0.0852266274161009,0.178064071293475,0,0,0.255225424989168,0,0,0,1.3940745403212,0.616067160352178,0,0,0.18532421910392,0.143124886741991,0,0,0.190630193923825,0,0,0,1.56989728039846,0.179872457583315,0,0.117812402345686,0.404364963146632,0,0,0.48763373908959,0,1.05650146756755,0.136499911407986,0.141405431953713,0,0,0,0,0.578775534266688,0,0,0.92947049429925,0,0,0.0982490410131212,0,0.354761064070598,0.211107635297664,0,0.379473173765715,0,0,0,2.17781969722645,0.0941438007767792,0,0,0,0,0.507447609232169,1.52927441428475,0.569647187174163,1.19115887728894,1.64544909234478,0,1.08006287447623,0.79312517629427,0,0,0.245040215981032,0.185803175125719,0.865615277858669,1.42283686696828,0.637705090915289,0.199579371432817,0.383010740264733,0.423347165447766,0.649243880549111,0.561594356226918,1.82587743226554,0.156679895773023,0,0.338583555603207,0.321176150207399,0.605399121573143,0,1.03051603426729,0,0,0.333698283423817,0,0,0,0,0.66614393599564,0,0,0.146508179271894,0.242721043499027,0.111443384277478,0.284136146806413,0,0,0,0,0.281338832821026,0.111308705022906,0,0.211125408127993,0.398495976502139,0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| ||
|short_description=p4@NUDCD3 | |short_description=p4@NUDCD3 | ||
}} | }} |
Latest revision as of 17:18, 18 September 2015
Short description: | p4@NUDCD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_NUDCD3_5end |
Coexpression cluster: | C23_CD4_CD8_Natural_Peripheral_Basophils_CD19_CD14 |
Association with transcript: | 5bp_to_ENST00000355451_5end |
EntrezGene: | NUDCD3 |
HGNC: | 22208 |
UniProt: | Q8IVD9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 7.42e-36 | 18 |
alpha-beta T cell | 7.42e-36 | 18 |
immature T cell | 7.42e-36 | 18 |
mature T cell | 7.42e-36 | 18 |
immature alpha-beta T cell | 7.42e-36 | 18 |
lymphoid lineage restricted progenitor cell | 2.31e-35 | 52 |
lymphocyte | 1.64e-34 | 53 |
common lymphoid progenitor | 1.64e-34 | 53 |
T cell | 2.04e-30 | 25 |
pro-T cell | 2.04e-30 | 25 |
CD8-positive, alpha-beta T cell | 2.00e-24 | 11 |
nongranular leukocyte | 3.53e-22 | 115 |
leukocyte | 1.81e-21 | 136 |
hematopoietic stem cell | 6.29e-19 | 168 |
hematopoietic cell | 2.66e-17 | 177 |
hematopoietic lineage restricted progenitor cell | 6.31e-17 | 120 |
CD4-positive, alpha-beta T cell | 1.79e-15 | 6 |
hematopoietic oligopotent progenitor cell | 6.58e-15 | 161 |
hematopoietic multipotent progenitor cell | 6.58e-15 | 161 |
B cell | 4.05e-09 | 14 |
naive T cell | 1.49e-08 | 3 |
natural killer cell | 3.76e-08 | 3 |
pro-NK cell | 3.76e-08 | 3 |
single nucleate cell | 5.72e-08 | 3 |
mononuclear cell | 5.72e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
corpus striatum | 2.22e-09 | 4 |
striatum | 2.22e-09 | 4 |
ventral part of telencephalon | 2.22e-09 | 4 |
future corpus striatum | 2.22e-09 | 4 |
caudate-putamen | 2.12e-07 | 3 |
dorsal striatum | 2.12e-07 | 3 |