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{{UBERON
{{UBERON
|id=UBERON:0000982
|name=skeletal joint
|namespace=
|def="Heterogeneous cluster which consists of two or more adjacent bones or cartilages, parts of which are interconnected by organ parts that consist of various types of connective tissue. Together with other joints and bones, a joint constitutes the skeletal system. Examples: pubic symphysis, knee joint, temporomandibular joint." [FMA:7490, Wikipedia:Joint, ZFIN:curator]
|xref=AEO:0000182;;BTO:0001686;;EFO:0000948;;EMAPA:19204;;FMA:7490;;GAID:102;;galen:Joint;;MA:0000319;;MAT:0000188;;MESH:A.02.835.583;;MIAA:0000188;;ncithesaurus:Joint;;OpenCyc:Mx4rvVjjdpwpEbGdrcN5Y29ycA;;RETIRED_EHDAA2:0003182;;TAO:0000367;;VHOG:0001276;;XAO:0000171;;ZFA:0001596
|is_a=UBERON:0004765;;UBERON:0004905
|synonym="articular joint" RELATED [BTO:0001686];;"joint" BROAD [FMA:7490]
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FBbt_00004645-FMA_228659-FMA_7490-MA_0000319-MIAA_0000188-XAO_0000171-ZFA_0001596
|alt_id=UBERON:FBbt_00004645-FMA_228659-FMA_7490-MA_0000319-MIAA_0000188-XAO_0000171-ZFA_0001596
|disjoint_from=
|comment=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Anatomical cluster that consists of two or more adjacent skeletal structures, which may be interconnected by various types of tissue[VSAO]." [VSAO:0000101, Wikipedia:Joint]
|subset=organ_slim;;uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=UBERON:0001474
|has_quality=
|has_quality=
|id=UBERON:0000982
|is_a=UBERON:0004905
|is_obsolete=
|located_in=
|located_in=
|name=skeletal joint
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0004770
|part_of=UBERON:0004770
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical cluster that consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue.[VSAO]" xsd:string;;UBPROP:0000001 "Anatomical cluster which consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue.[TAO]" xsd:string
|subset=organ_slim;;uberon_slim;;vertebrate_core
|synonym="articular joint" RELATED [BTO:0001686];;"articulation" BROAD [VSAO:0000101];;"joint" BROAD [FMA:7490, VSAO:0000101]
|union_of=UBERON:0002217;;UBERON:0011134
|xref=AEO:0000182;;BTO:0001686;;EFO:0000948;;EMAPA:19204;;FMA:7490;;GAID:102;;galen:Joint;;MA:0000319;;MAT:0000188;;MESH:A.02.835.583;;MIAA:0000188;;ncithesaurus:Joint;;OpenCyc:Mx4rvVjjdpwpEbGdrcN5Y29ycA;;RETIRED_EHDAA2:0003182;;SCTID:302536002;;TAO:0000367;;VHOG:0001276;;VSAO:0000101;;XAO:0000171;;ZFA:0001596
}}
}}

Latest revision as of 17:13, 12 September 2014

Name:skeletal joint
Namespace:FANTOM
Definition:"Anatomical cluster that consists of two or more adjacent skeletal structures, which may be interconnected by various types of tissue[VSAO]." [VSAO:0000101, Wikipedia:Joint]
Xrefs:
links:

AEO:0000182
BTO:0001686
EFO:0000948
EMAPA:19204
FMA:7490
GAID:102
galen:Joint
MA:0000319
MAT:0000188
MESH:A.02.835.583
MIAA:0000188
ncithesaurus:Joint
OpenCyc:Mx4rvVjjdpwpEbGdrcN5Y29ycA
RETIRED_EHDAA2:0003182
SCTID:302536002
TAO:0000367
VHOG:0001276
VSAO:0000101
XAO:0000171

ZFA:0001596
Synonyms: "articular joint" RELATED [BTO:0001686]
"articulation" BROAD [VSAO:0000101]
"joint" BROAD [FMA:7490, VSAO:0000101]
Alt_id: UBERON:FBbt_00004645-FMA_228659-FMA_7490-MA_0000319-MIAA_0000188-XAO_0000171-ZFA_0001596
Subset: organ_slim
uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004905(articulation)
disjoint_from:UBERON:0001474(bone element)
union_of:UBERON:0002217(synovial joint),UBERON:0011134(nonsynovial joint)
part_of:UBERON:0004770(articular system)



Children

is a:UBERON:0002217 (synovial joint),UBERON:0003657 (limb joint),UBERON:0011134 (nonsynovial joint)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000982 (skeletal joint), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.05e-102FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_b1ecf261b483c6257460cdb5e61692bep@chr3:174737010..174737023, +
5.05e-102FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_b1ecf261b483c6257460cdb5e61692bep@chr3:174737010..174737023, +
6.68e-88FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_954cbe2f4583cab6ca97335e6355beb5p4@PAX1
6.68e-88FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_954cbe2f4583cab6ca97335e6355beb5p4@PAX1
5.7e-81FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_3a6d6fd927550657ed2cf47799211a0fp15@SNED1
5.7e-81FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_3a6d6fd927550657ed2cf47799211a0fp15@SNED1
3.87e-62FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_16b8648578283daf3e4c9dda5487b9adp@chr5:30104176..30104187, -
3.87e-62FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_16b8648578283daf3e4c9dda5487b9adp@chr5:30104176..30104187, -
5.39e-52FFCP PHASE2:Hg19::chr21:39705383..39705394,-#_27390d93e0ae3513d383cfc7c3e635a8p1@ENST00000436845
5.39e-52FFCP PHASE1:Hg19::chr21:39705383..39705394,-#_27390d93e0ae3513d383cfc7c3e635a8p1@ENST00000436845
5.25e-50FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_a064797364a574ba49f27ccf254ba349p6@SIX4
5.25e-50FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_a064797364a574ba49f27ccf254ba349p6@SIX4
1.71e-49FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_66eadedaa2566d6970c24e73df81bb8cp4@NKX3-2
1.71e-49FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_66eadedaa2566d6970c24e73df81bb8cp4@NKX3-2
4.01e-47FFCP PHASE1:Hg19::chr5:140887761..140887777,+#_6fcebd35458a11de934ecb03fbb75672p@chr5:140887761..140887777, +
4.01e-47FFCP PHASE2:Hg19::chr5:140887761..140887777,+#_6fcebd35458a11de934ecb03fbb75672p@chr5:140887761..140887777, +
3.73e-45FFCP PHASE1:Hg19::chr2:242009429..242009432,+#_3ae92f11804214545e7d59030247fed4p@chr2:242009429..242009432, +
3.73e-45FFCP PHASE2:Hg19::chr2:242009429..242009432,+#_3ae92f11804214545e7d59030247fed4p@chr2:242009429..242009432, +
5.04e-45FFCP PHASE1:Hg19::chr9:114135497..114135526,-#_b3e0fd9188c1f214584e0fa4f1c7a0a1p@chr9:114135497..114135526, -
5.04e-45FFCP PHASE2:Hg19::chr9:114135497..114135526,-#_b3e0fd9188c1f214584e0fa4f1c7a0a1p@chr9:114135497..114135526, -
1.45e-44FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_510fcef1366d329167042ac2d30aa366p@chr2:241897125..241897142, -
1.45e-44FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_510fcef1366d329167042ac2d30aa366p@chr2:241897125..241897142, -
5.55e-44FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_7cb74435875f0979b11e68c1e10189b0p@chr3:80727046..80727051, -
5.55e-44FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_7cb74435875f0979b11e68c1e10189b0p@chr3:80727046..80727051, -
5.66e-42FFCP PHASE1:Hg19::chr7:100202784..100202796,-#_701720b73d744b2d3f0853e554fb5754p@chr7:100202784..100202796, -
5.66e-42FFCP PHASE2:Hg19::chr7:100202784..100202796,-#_701720b73d744b2d3f0853e554fb5754p@chr7:100202784..100202796, -
9.63e-42FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_3482ce59ea7e0ef30e61dd09f0c58cbdp20@CAPZB
9.63e-42FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_3482ce59ea7e0ef30e61dd09f0c58cbdp20@CAPZB
2.13e-39FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_57a4c69b200305e1cd70b23f2ad439bcp@chr1:19778678..19778689, -
2.13e-39FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_57a4c69b200305e1cd70b23f2ad439bcp@chr1:19778678..19778689, -
1.04e-37FFCP PHASE1:Hg19::chr2:241897189..241897221,-#_47c9a74722964c8683496907625bdacfp@chr2:241897189..241897221, -
1.04e-37FFCP PHASE2:Hg19::chr2:241897189..241897221,-#_47c9a74722964c8683496907625bdacfp@chr2:241897189..241897221, -
1.51e-37FFCP PHASE2:Hg19::chr2:241987807..241987808,+#_8475d26d970679fc109de4870a5a58d4p22@SNED1
1.51e-37FFCP PHASE1:Hg19::chr2:241987807..241987808,+#_8475d26d970679fc109de4870a5a58d4p22@SNED1
3.4e-36FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_bd256bfad7ee90cc9618e352df4555c5p1@uc010aki.1
3.4e-36FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_bd256bfad7ee90cc9618e352df4555c5p1@uc010aki.1
6.5e-34FFCP PHASE2:Hg19::chr7:80546293..80546302,-#_7ec5d95a9316539fcea2f0e6ed75681ep31@SEMA3C
6.5e-34FFCP PHASE1:Hg19::chr7:80546293..80546302,-#_7ec5d95a9316539fcea2f0e6ed75681ep31@SEMA3C
9.08e-34FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_ef35dd31c71fd7b20f2a46f5220264d5p3@uc010aki.1
9.08e-34FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_ef35dd31c71fd7b20f2a46f5220264d5p3@uc010aki.1
1.15e-32FFCP PHASE1:Hg19::chr20:21687260..21687270,+#_c6717be6bc0c3c41cc425ef5433c083cp3@PAX1
1.15e-32FFCP PHASE2:Hg19::chr20:21687260..21687270,+#_c6717be6bc0c3c41cc425ef5433c083cp3@PAX1
1.77e-32FFCP PHASE1:Hg19::chr10:81923378..81923389,-#_b3319de5309e55dbba91e36b0a8b25dap@chr10:81923378..81923389, -
1.77e-32FFCP PHASE2:Hg19::chr10:81923378..81923389,-#_b3319de5309e55dbba91e36b0a8b25dap@chr10:81923378..81923389, -
2.19e-32FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_dfd994c339fe899a84aa61e00d6fbcdbp@chr2:12248310..12248334, -
2.19e-32FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_dfd994c339fe899a84aa61e00d6fbcdbp@chr2:12248310..12248334, -
8.44e-32FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_97d0f3b2af38cf04b5a1669d02f67564p19@HDAC9
8.44e-32FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_97d0f3b2af38cf04b5a1669d02f67564p19@HDAC9
3.34e-31FFCP PHASE1:Hg19::chr20:43343610..43343645,+#_95a7e7bab68d711268570331b1700d7ep5@WISP2
3.34e-31FFCP PHASE2:Hg19::chr20:43343610..43343645,+#_95a7e7bab68d711268570331b1700d7ep5@WISP2
1.1e-30FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_25a00504750ff441e16444a290823341p@chr7:158224707..158224729, -
1.1e-30FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_25a00504750ff441e16444a290823341p@chr7:158224707..158224729, -
4.93e-30FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_1c45ffec85a00cf30068ae796e5559c0p@chr1:65888177..65888194, +
4.93e-30FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_1c45ffec85a00cf30068ae796e5559c0p@chr1:65888177..65888194, +
1.3e-29FFCP PHASE1:Hg19::chr2:241937787..241937803,+#_4ba210b1c2eb552e30ea71cd43d4c366p5@SNED1
1.3e-29FFCP PHASE2:Hg19::chr2:241937787..241937803,+#_4ba210b1c2eb552e30ea71cd43d4c366p5@SNED1
6.39e-29FFCP PHASE1:Hg19::chr17:38613285..38613298,-#_ccb8b1d4b4efe981a8712c45fab8da08p@chr17:38613285..38613298, -
6.39e-29FFCP PHASE2:Hg19::chr17:38613285..38613298,-#_ccb8b1d4b4efe981a8712c45fab8da08p@chr17:38613285..38613298, -
6.71e-29FFCP PHASE1:Hg19::chr9:113798560..113798572,-#_d2d124841fc83868f8ec5cd24a2c660ep34@LPAR1
6.71e-29FFCP PHASE2:Hg19::chr9:113798560..113798572,-#_d2d124841fc83868f8ec5cd24a2c660ep34@LPAR1
1.23e-28FFCP PHASE2:Hg19::chr4:13546583..13546593,-#_5c8403bef8ac1b1d7b095c65a1097c95p3@NKX3-2
1.23e-28FFCP PHASE1:Hg19::chr4:13546583..13546593,-#_5c8403bef8ac1b1d7b095c65a1097c95p3@NKX3-2
1.72e-28FFCP PHASE1:Hg19::chr20:43343596..43343608,+#_9755f19284a873f84fa37a6b47130880p6@WISP2
1.72e-28FFCP PHASE2:Hg19::chr20:43343596..43343608,+#_9755f19284a873f84fa37a6b47130880p6@WISP2
1.13e-27FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_1b3082048b573a26dcd0d7ab0b091227p1@MGC27382
1.13e-27FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_1b3082048b573a26dcd0d7ab0b091227p1@MGC27382
3.37e-27FFCP PHASE1:Hg19::chr7:18832834..18832859,+#_fa9b7b64171dcec5b717d3de4e352bcdp18@HDAC9
3.37e-27FFCP PHASE2:Hg19::chr7:18832834..18832859,+#_fa9b7b64171dcec5b717d3de4e352bcdp18@HDAC9
9.5e-27FFCP PHASE1:Hg19::chr8:25337491..25337504,+#_d0b54eb3c8ed6142b2a46aa604db10a2p@chr8:25337491..25337504, +
9.5e-27FFCP PHASE2:Hg19::chr8:25337491..25337504,+#_d0b54eb3c8ed6142b2a46aa604db10a2p@chr8:25337491..25337504, +
2.17e-26FFCP PHASE1:Hg19::chr14:61113228..61113233,-#_e47e486b3e6360ee7e09add98eab25dfp@chr14:61113228..61113233, -
2.17e-26FFCP PHASE2:Hg19::chr14:61113228..61113233,-#_e47e486b3e6360ee7e09add98eab25dfp@chr14:61113228..61113233, -
5.22e-26FFCP PHASE2:Hg19::chr1:172134667..172134711,+#_ecbc0d75eaf45575b2714e00d4874f7ap@chr1:172134667..172134711, +
5.22e-26FFCP PHASE1:Hg19::chr1:172134736..172134739,+#_ecbc0d75eaf45575b2714e00d4874f7ap@chr1:172134736..172134739, +
5.22e-26FFCP PHASE1:Hg19::chr13:24914614..24914622,-#_ecbc0d75eaf45575b2714e00d4874f7ap@chr13:24914614..24914622, -
5.22e-26FFCP PHASE2:Hg19::chr12:130786785..130786827,-#_ecbc0d75eaf45575b2714e00d4874f7ap@chr12:130786785..130786827, -
5.22e-26FFCP PHASE2:Hg19::chr1:172134736..172134739,+#_ecbc0d75eaf45575b2714e00d4874f7ap@chr1:172134736..172134739, +
5.22e-26FFCP PHASE1:Hg19::chr1:172134755..172134764,+#_ecbc0d75eaf45575b2714e00d4874f7ap@chr1:172134755..172134764, +
5.22e-26FFCP PHASE1:Hg19::chr9:33028063..33028067,-#_ecbc0d75eaf45575b2714e00d4874f7ap@chr9:33028063..33028067, -
5.22e-26FFCP PHASE1:Hg19::chr15:68117826..68117829,+#_ecbc0d75eaf45575b2714e00d4874f7ap9@SKOR1
5.22e-26FFCP PHASE1:Hg19::chr2:181751144..181751146,+#_ecbc0d75eaf45575b2714e00d4874f7ap@chr2:181751144..181751146, +
5.22e-26FFCP PHASE2:Hg19::chr1:172134755..172134764,+#_ecbc0d75eaf45575b2714e00d4874f7ap@chr1:172134755..172134764, +
5.22e-26FFCP PHASE2:Hg19::chr13:24914614..24914622,-#_ecbc0d75eaf45575b2714e00d4874f7ap@chr13:24914614..24914622, -
5.22e-26FFCP PHASE1:Hg19::chr8:37411632..37411639,-#_ecbc0d75eaf45575b2714e00d4874f7ap1@ENST00000517363
5.22e-26FFCP PHASE2:Hg19::chr15:68117826..68117829,+#_ecbc0d75eaf45575b2714e00d4874f7ap9@SKOR1
5.22e-26FFCP PHASE2:Hg19::chr2:181751144..181751146,+#_ecbc0d75eaf45575b2714e00d4874f7ap@chr2:181751144..181751146, +
5.22e-26FFCP PHASE2:Hg19::chr9:33028063..33028067,-#_ecbc0d75eaf45575b2714e00d4874f7ap@chr9:33028063..33028067, -
5.22e-26FFCP PHASE2:Hg19::chr8:37411632..37411639,-#_ecbc0d75eaf45575b2714e00d4874f7ap1@ENST00000517363
5.22e-26FFCP PHASE1:Hg19::chr12:130786785..130786827,-#_ecbc0d75eaf45575b2714e00d4874f7ap@chr12:130786785..130786827, -
5.22e-26FFCP PHASE1:Hg19::chr1:172134667..172134711,+#_ecbc0d75eaf45575b2714e00d4874f7ap@chr1:172134667..172134711, +
8.65e-26FFCP PHASE1:Hg19::chr1:78769549..78769554,+#_1198995c9191029adea2359747dc2cbcp5@PTGFR
8.65e-26FFCP PHASE2:Hg19::chr18:22150956..22150983,+#_1198995c9191029adea2359747dc2cbcp@chr18:22150956..22150983, +
8.65e-26FFCP PHASE2:Hg19::chr1:78769549..78769554,+#_1198995c9191029adea2359747dc2cbcp5@PTGFR
8.65e-26FFCP PHASE1:Hg19::chr18:22150956..22150983,+#_1198995c9191029adea2359747dc2cbcp@chr18:22150956..22150983, +
9.05e-26FFCP PHASE2:Hg19::chr6:1626414..1626429,-#_13fee1f9cf825426ff98a937d49d53fdp7@GMDS
9.05e-26FFCP PHASE1:Hg19::chr6:1626414..1626429,-#_13fee1f9cf825426ff98a937d49d53fdp7@GMDS
1.44e-25FFCP PHASE2:Hg19::chr9:113798435..113798442,-#_8aef5617c783673d961017fc8baebdfep42@LPAR1
1.44e-25FFCP PHASE1:Hg19::chr9:113798435..113798442,-#_8aef5617c783673d961017fc8baebdfep42@LPAR1
1.56e-25FFCP PHASE1:Hg19::chr5:17743903..17743914,+#_74496285239d2ae33f689d48d05eea00p@chr5:17743903..17743914, +
1.56e-25FFCP PHASE2:Hg19::chr5:17743903..17743914,+#_74496285239d2ae33f689d48d05eea00p@chr5:17743903..17743914, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical cluster that consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical cluster which consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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