UBERON:0003071: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:0005060;;UBERON:XAO_0000227-ZFA_0000570 | ||
|comment=AO notes: TODO - check that GO's optic placode is the same as ZFA's eye primordium; we may want to have separate term for ocular primordium precursor. XAO has both optic field and eye primordium | |comment=AO notes: TODO - check that GO's optic placode is the same as ZFA's eye primordium; we may want to have separate term for ocular primordium precursor. XAO has both optic field and eye primordium | ||
|created_by= | |created_by= | ||
| | |def="Portion of tissue that is part of the anterior neural keel and will form the optic vesicle[ZFA]. A paired ectodermal placode that becomes invaginated to form the embryonic lens vesicles." [GO:0046619, ZFA:0000570] | ||
|derives_from= | |derives_from= | ||
|develops_from=UBERON:0003056 | |develops_from=UBERON:0003056 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0003071 | |||
|is_a=UBERON:0005291 ;;UBERON:0007497 ;;UBERON:0010371 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=eye primordium | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0003056 | |part_of=UBERON:0003056 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="eye anlage" RELATED [XAO:0000227];;"eye field" RELATED [];;"eye placode" EXACT [OBOL:automatic];;"occular primordium" EXACT [];;"ocular primordium" EXACT [];;"optic field" RELATED [];;"optic placode" EXACT [GO:0046619];;"optic placode of camera-type eye" EXACT [GO:0046619, UBERON:cjm];;"optic primordium" EXACT [] | ||
|union_of= | |||
|xref=AAO:0011038;;EFO:0003541;;EHDAA2:0004431;;TAO:0000570;;XAO:0000227;;XAO:0004090;;ZFA:0000570 | |||
}} | }} | ||
Latest revision as of 17:36, 12 September 2014
| Name: | eye primordium | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Portion of tissue that is part of the anterior neural keel and will form the optic vesicle[ZFA]. A paired ectodermal placode that becomes invaginated to form the embryonic lens vesicles." [GO:0046619, ZFA:0000570] | ||
| Xrefs: |
| ||
| Synonyms: |
"eye anlage" RELATED [XAO:0000227] "eye field" RELATED [] "eye placode" EXACT [OBOL:automatic] "occular primordium" EXACT [] "ocular primordium" EXACT [] "optic field" RELATED [] "optic placode" EXACT [GO:0046619] "optic placode of camera-type eye" EXACT [GO:0046619, UBERON:cjm] "optic primordium" EXACT [] | ||
| Comments: | AO notes: TODO - check that GO's optic placode is the same as ZFA's eye primordium; we may want to have separate term for ocular primordium precursor. XAO has both optic field and eye primordium | ||
| Alt_id: |
UBERON:0005060 UBERON:XAO_0000227-ZFA_0000570 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005291(embryonic tissue),UBERON:0007497(developing epithelial placode),UBERON:0010371(ecto-epithelium) |
|---|---|
| develops_from: | UBERON:0003056(pre-chordal neural plate) |
| part_of: | UBERON:0003056(pre-chordal neural plate) |
Children
| develops from: | UBERON:0004128 (optic vesicle),UBERON:0010312 (immature eye) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003071 (eye primordium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31818106..31818119,+#_b362d8d269176b10751de4e3ba5bb9fd | p@chr17:31818106..31818119, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:77532283..77532316,-#_b362d8d269176b10751de4e3ba5bb9fd | p@chr11:77532283..77532316, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr4:133799669..133799683,+#_b362d8d269176b10751de4e3ba5bb9fd | p1@E130218I03Rik |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31817987..31818013,+#_b362d8d269176b10751de4e3ba5bb9fd | p@chr17:31817987..31818013, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr14:118451218..118451221,-#_b362d8d269176b10751de4e3ba5bb9fd | p4@Dct |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:3622163..3622187,-#_b362d8d269176b10751de4e3ba5bb9fd | p8@Osbp2 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr14:118451218..118451221,-#_b362d8d269176b10751de4e3ba5bb9fd | p4@Dct |
| 1.31e-86 | FFCP PHASE1:Mm9::chr10:127668442..127668453,+#_b362d8d269176b10751de4e3ba5bb9fd | p@chr10:127668442..127668453, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr3:129525389..129525400,-#_b362d8d269176b10751de4e3ba5bb9fd | p@chr3:129525389..129525400, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr9:89697580..89697585,-#_b362d8d269176b10751de4e3ba5bb9fd | p1@Mir184 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31818263..31818276,+#_b362d8d269176b10751de4e3ba5bb9fd | p@chr17:31818263..31818276, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31817987..31818013,+#_b362d8d269176b10751de4e3ba5bb9fd | p@chr17:31817987..31818013, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr16:21743134..21743139,-#_b362d8d269176b10751de4e3ba5bb9fd | p@chr16:21743134..21743139, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr10:67364011..67364018,-#_b362d8d269176b10751de4e3ba5bb9fd | p5@Zfp365 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:77532391..77532408,-#_b362d8d269176b10751de4e3ba5bb9fd | p@chr11:77532391..77532408, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr3:129525389..129525400,-#_b362d8d269176b10751de4e3ba5bb9fd | p@chr3:129525389..129525400, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr9:89697580..89697585,-#_b362d8d269176b10751de4e3ba5bb9fd | p1@Mir184 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr2:90827760..90827769,+#_b362d8d269176b10751de4e3ba5bb9fd | p6@Celf1 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31818106..31818119,+#_b362d8d269176b10751de4e3ba5bb9fd | p@chr17:31818106..31818119, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:77532283..77532316,-#_b362d8d269176b10751de4e3ba5bb9fd | p@chr11:77532283..77532316, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr16:21743134..21743139,-#_b362d8d269176b10751de4e3ba5bb9fd | p@chr16:21743134..21743139, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:3622192..3622225,-#_b362d8d269176b10751de4e3ba5bb9fd | p3@Osbp2 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr10:127668442..127668453,+#_b362d8d269176b10751de4e3ba5bb9fd | p@chr10:127668442..127668453, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr2:90827760..90827769,+#_b362d8d269176b10751de4e3ba5bb9fd | p6@Celf1 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:3622163..3622187,-#_b362d8d269176b10751de4e3ba5bb9fd | p8@Osbp2 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31818263..31818276,+#_b362d8d269176b10751de4e3ba5bb9fd | p@chr17:31818263..31818276, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:77532391..77532408,-#_b362d8d269176b10751de4e3ba5bb9fd | p@chr11:77532391..77532408, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr4:133799669..133799683,+#_b362d8d269176b10751de4e3ba5bb9fd | p1@E130218I03Rik |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31815126..31815139,-#_b362d8d269176b10751de4e3ba5bb9fd | p@chr17:31815126..31815139, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:3622192..3622225,-#_b362d8d269176b10751de4e3ba5bb9fd | p3@Osbp2 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr10:67364011..67364018,-#_b362d8d269176b10751de4e3ba5bb9fd | p5@Zfp365 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31815126..31815139,-#_b362d8d269176b10751de4e3ba5bb9fd | p@chr17:31815126..31815139, - |
| 2.3e-78 | FFCP PHASE2:Mm9::chr10:127668637..127668650,+#_239f7de7c5b23215d6b8c9012026cb52 | p3@LOC100504989, p3@Timeless |
| 2.3e-78 | FFCP PHASE2:Mm9::chr7:64675015..64675028,+#_239f7de7c5b23215d6b8c9012026cb52 | p@chr7:64675015..64675028, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr7:64675015..64675028,+#_239f7de7c5b23215d6b8c9012026cb52 | p@chr7:64675015..64675028, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr10:127668637..127668650,+#_239f7de7c5b23215d6b8c9012026cb52 | p3@LOC100504989, p3@Timeless |
| 2.82e-78 | FFCP PHASE1:Mm9::chr2:105509100..105509107,+#_3564d323f27a6fc14886f5fb92fcf06b | p6@Pax6 |
| 2.82e-78 | FFCP PHASE2:Mm9::chr2:105509100..105509107,+#_3564d323f27a6fc14886f5fb92fcf06b | p6@Pax6 |
| 2.82e-78 | FFCP PHASE2:Mm9::chr6:97891135..97891147,+#_3564d323f27a6fc14886f5fb92fcf06b | p@chr6:97891135..97891147, + |
| 2.82e-78 | FFCP PHASE1:Mm9::chr6:97891135..97891147,+#_3564d323f27a6fc14886f5fb92fcf06b | p@chr6:97891135..97891147, + |
| 3.46e-78 | FFCP PHASE1:Mm9::chr14:49498256..49498278,+#_a11b6832c4d80cc09d26e770677077e3 | p1@4933429O19Rik |
| 3.46e-78 | FFCP PHASE2:Mm9::chr14:49498256..49498278,+#_a11b6832c4d80cc09d26e770677077e3 | p1@4933429O19Rik |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:113507470..113507483,-#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr5:113507470..113507483, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:152166537..152166579,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p1@Pdc |
| 4.97e-77 | FFCP PHASE1:Mm9::chr10:127668799..127668810,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p5@LOC100504989, p5@Timeless |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:113504891..113504916,-#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr5:113504891..113504916, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr3:129525452..129525463,-#_8dc99c3d4a72fec688f6a91251b2ad66 | p3@Rrh |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:38092602..38092616,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr1:38092602..38092616, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr17:31817947..31817965,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr17:31817947..31817965, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr8:77582172..77582183,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr8:77582172..77582183, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr6:85969237..85969247,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr6:85969237..85969247, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112686483..112686494,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr5:112686483..112686494, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:65147201..65147212,-#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr1:65147201..65147212, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr2:93906955..93906973,-#_8dc99c3d4a72fec688f6a91251b2ad66 | p2@Hsd17b12 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr11:95705150..95705170,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p3@Gngt2 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr7:29477874..29477889,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p6@Fbxo27 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112696408..112696421,-#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr5:112696408..112696421, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr4:19208009..19208054,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p1@Cngb3 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr10:127668686..127668697,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p4@LOC100504989, p4@Timeless |
| 4.97e-77 | FFCP PHASE1:Mm9::chr14:35413322..35413333,-#_8dc99c3d4a72fec688f6a91251b2ad66 | p1@Opn4 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr16:56204438..56204451,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p1@Impg2 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr17:31818215..31818239,-#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr17:31818215..31818239, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr9:107964319..107964338,-#_8dc99c3d4a72fec688f6a91251b2ad66 | p11@Rnf123 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112681470..112681483,-#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr5:112681470..112681483, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:113504891..113504916,-#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr5:113504891..113504916, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112691047..112691066,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr5:112691047..112691066, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112675556..112675574,-#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr5:112675556..112675574, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr3:34488839..34488876,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p1@ENSMUST00000173365 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr10:93761330..93761358,-#_8dc99c3d4a72fec688f6a91251b2ad66 | p1@Gm4792 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr6:85969237..85969247,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr6:85969237..85969247, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr11:77532270..77532280,-#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr11:77532270..77532280, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr7:28282354..28282365,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr7:28282354..28282365, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr8:77582172..77582183,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr8:77582172..77582183, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112691047..112691066,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr5:112691047..112691066, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:38092602..38092616,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr1:38092602..38092616, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr14:35413322..35413333,-#_8dc99c3d4a72fec688f6a91251b2ad66 | p1@Opn4 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112690729..112690741,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr5:112690729..112690741, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112690729..112690741,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr5:112690729..112690741, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:113506190..113506202,-#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr5:113506190..113506202, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112696408..112696421,-#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr5:112696408..112696421, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:65147224..65147236,-#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr1:65147224..65147236, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr10:127668480..127668491,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr10:127668480..127668491, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:65147201..65147212,-#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr1:65147201..65147212, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr14:52730585..52730607,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p1@Rpgrip1 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr17:31816514..31816526,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr17:31816514..31816526, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:38092538..38092550,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr1:38092538..38092550, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr10:127668799..127668810,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p5@LOC100504989, p5@Timeless |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112690636..112690656,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr5:112690636..112690656, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr4:19208009..19208054,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p1@Cngb3 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112690636..112690656,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr5:112690636..112690656, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:65149656..65149674,-#_8dc99c3d4a72fec688f6a91251b2ad66 | p2@Cryga |
| 4.97e-77 | FFCP PHASE2:Mm9::chr7:28282354..28282365,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr7:28282354..28282365, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112681470..112681483,-#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr5:112681470..112681483, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:113506006..113506025,-#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr5:113506006..113506025, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112698505..112698537,-#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr5:112698505..112698537, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr3:34488839..34488876,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p1@ENSMUST00000173365 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr3:129525405..129525428,-#_8dc99c3d4a72fec688f6a91251b2ad66 | p1@Rrh |
| 4.97e-77 | FFCP PHASE1:Mm9::chr8:77582194..77582219,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr8:77582194..77582219, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112690744..112690755,+#_8dc99c3d4a72fec688f6a91251b2ad66 | p@chr5:112690744..112690755, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr10:93761330..93761358,-#_8dc99c3d4a72fec688f6a91251b2ad66 | p1@Gm4792 |
