Personal tools

UBERON:0007282: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0007282
|alt_id=
|name=presumptive segmental plate
|namespace=
|def=
|xref=EFO:0003421;;ZFA:0000053
|is_a=UBERON:0006598
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0009618
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0007282
|is_a=UBERON:0006598
|is_obsolete=
|located_in=
|located_in=
|name=presumptive segmental plate
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=EFO:0003421;;TAO:0000053;;ZFA:0000053
}}
}}

Latest revision as of 18:01, 12 September 2014

Name:presumptive segmental plate
Namespace:FANTOM
Xrefs:
links:

EFO:0003421
TAO:0000053

ZFA:0000053

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0006598(presumptive structure)
develops_from:UBERON:0009618(trunk paraxial mesoderm)



Children

develops from:UBERON:0003059 (presomitic mesoderm)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007282 (presumptive segmental plate), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.24e-58FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_0a0aa05a06b441f12d568a37db9e1435p@chrX:160838683..160838694, +
5.24e-58FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_0a0aa05a06b441f12d568a37db9e1435p@chrX:160838683..160838694, +
5.11e-50FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_a377bd7fe05920856cd4307ff3f269a5p@chr12:105433069..105433075, -
5.11e-50FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_a377bd7fe05920856cd4307ff3f269a5p@chrX:65748600..65748616, +
5.11e-50FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_a377bd7fe05920856cd4307ff3f269a5p@chrX:65748600..65748616, +
5.11e-50FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_a377bd7fe05920856cd4307ff3f269a5p@chr12:105433069..105433075, -
1.47e-48FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_c20d6e3bfa102f3d9c30d8df47081be6p@chrX:160838787..160838800, +
1.47e-48FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_c20d6e3bfa102f3d9c30d8df47081be6p@chrX:160838787..160838800, +
1.58e-44FFCP PHASE1:Hg19::chr10:49813077..49813087,-#_3b1fc075db3e706f939fc7a8961949b2p8@ARHGAP22
1.58e-44FFCP PHASE2:Hg19::chr10:49813077..49813087,-#_3b1fc075db3e706f939fc7a8961949b2p8@ARHGAP22
8.42e-44FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_d2c11585d69c2e02f8d3007906122198p@chr11:81849982..81850000, +
8.42e-44FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_d2c11585d69c2e02f8d3007906122198p@chr11:81849982..81850000, +
9.2e-41FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_25b0c1c28d5a5dbe0cf6217808e6371bp@chr6:53359400..53359406, +
9.2e-41FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_25b0c1c28d5a5dbe0cf6217808e6371bp@chr6:53359400..53359406, +
1.15e-40FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_f018376185d22905b5d97d64c43da1bbp@chr17:14813242..14813246, -
1.15e-40FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_f018376185d22905b5d97d64c43da1bbp@chr17:14813242..14813246, -
2.26e-39FFCP PHASE1:Hg19::chr10:49813051..49813064,-#_4210762babd4112d5240dd8f63d1598ep4@ARHGAP22
2.26e-39FFCP PHASE2:Hg19::chr10:49813051..49813064,-#_4210762babd4112d5240dd8f63d1598ep4@ARHGAP22
2.88e-39FFCP PHASE1:Hg19::chr9:35685631..35685657,+#_067e2b8e5e2ce7568c14350c0b61d1d6p@chr9:35685631..35685657, +
2.88e-39FFCP PHASE2:Hg19::chr9:35685631..35685657,+#_067e2b8e5e2ce7568c14350c0b61d1d6p@chr9:35685631..35685657, +
3.7e-39FFCP PHASE1:Mm9::chr1:127573795..127573810,+#_9d1c5c3e83f51a02b10c3f10c6e9e0d1p4@Gpr39
3.7e-39FFCP PHASE2:Mm9::chr1:127573795..127573810,+#_9d1c5c3e83f51a02b10c3f10c6e9e0d1p4@Gpr39
3.75e-39FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_4fc041c035ec6a623ee36b794964a51dp@chrX:160840025..160840037, +
3.75e-39FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_4fc041c035ec6a623ee36b794964a51dp@chrX:160840048..160840057, +
3.75e-39FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_4fc041c035ec6a623ee36b794964a51dp@chrX:160840025..160840037, +
3.75e-39FFCP PHASE2:Mm9::chrX:160823859..160823870,+#_4fc041c035ec6a623ee36b794964a51dp@chrX:160823859..160823870, +
3.75e-39FFCP PHASE1:Mm9::chrX:160823859..160823870,+#_4fc041c035ec6a623ee36b794964a51dp@chrX:160823859..160823870, +
3.75e-39FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_4fc041c035ec6a623ee36b794964a51dp@chrX:160840048..160840057, +
1.14e-38FFCP PHASE1:Hg19::chr6:148593425..148593498,+#_12e9323e3086279f664bbd1a4d645f70p2@SASH1
1.14e-38FFCP PHASE2:Hg19::chr6:148593425..148593498,+#_12e9323e3086279f664bbd1a4d645f70p2@SASH1
1.34e-36FFCP PHASE1:Hg19::chr10:49813013..49813032,-#_f46fab9f5a33a674577a24fc44a33880p3@ARHGAP22
1.34e-36FFCP PHASE2:Hg19::chr10:49813013..49813032,-#_f46fab9f5a33a674577a24fc44a33880p3@ARHGAP22
1.46e-35FFCP PHASE1:Hg19::chr19:50031567..50031632,+#_b8c1b33c3c65b1f75299babfc5f4d967p2@RCN3
1.46e-35FFCP PHASE2:Hg19::chr19:50031567..50031632,+#_b8c1b33c3c65b1f75299babfc5f4d967p2@RCN3
3.31e-35FFCP PHASE2:Mm9::chr3:79689074..79689090,+#_a801dd00f58c7ac419150cb4d281c831p11@Fam198b
3.31e-35FFCP PHASE1:Mm9::chr3:79689074..79689090,+#_a801dd00f58c7ac419150cb4d281c831p11@Fam198b
3.69e-35FFCP PHASE2:Mm9::chr1:127574253..127574264,+#_d238b4007fbcc723e32ac48fa035a411p@chr1:127574253..127574264, +
3.69e-35FFCP PHASE1:Mm9::chr1:127574253..127574264,+#_d238b4007fbcc723e32ac48fa035a411p@chr1:127574253..127574264, +
5.09e-35FFCP PHASE1:Mm9::chr1:127573733..127573745,+#_7a2798d24034e6c8cff4d600cf0f65bap7@Gpr39
5.09e-35FFCP PHASE2:Mm9::chr1:127573733..127573745,+#_7a2798d24034e6c8cff4d600cf0f65bap7@Gpr39
5.98e-35FFCP PHASE1:Mm9::chr1:127573690..127573699,+#_b2af74dbd31e1c2e49adbba79a5d5a00p11@Gpr39
5.98e-35FFCP PHASE2:Mm9::chr1:127573690..127573699,+#_b2af74dbd31e1c2e49adbba79a5d5a00p11@Gpr39
7.03e-35FFCP PHASE1:Mm9::chrX:160839768..160839780,+#_e7a141ce8ad8ce3c0486b616d6c4f17dp@chrX:160839768..160839780, +
7.03e-35FFCP PHASE2:Mm9::chrX:160839768..160839780,+#_e7a141ce8ad8ce3c0486b616d6c4f17dp@chrX:160839768..160839780, +
9.95e-35FFCP PHASE1:Hg19::chr9:35685445..35685517,+#_79df63702b1331960572b88e5820aa22p@chr9:35685445..35685517, +
9.95e-35FFCP PHASE2:Hg19::chr9:35685445..35685517,+#_79df63702b1331960572b88e5820aa22p@chr9:35685445..35685517, +
1.33e-34FFCP PHASE2:Mm9::chr1:127573462..127573472,+#_b6573b597c76ac759ecf3aa40a425832p8@Gpr39
1.33e-34FFCP PHASE1:Mm9::chr1:127573462..127573472,+#_b6573b597c76ac759ecf3aa40a425832p8@Gpr39
1.89e-34FFCP PHASE2:Hg19::chr9:35684475..35684520,+#_c7fd8ca0cf7843ade5eaefa6b7d62facp@chr9:35684475..35684520, +
1.89e-34FFCP PHASE1:Hg19::chr9:35684475..35684520,+#_c7fd8ca0cf7843ade5eaefa6b7d62facp@chr9:35684475..35684520, +
4.48e-34FFCP PHASE1:Hg19::chr14:94595800..94595811,-#_ee90411dffb0ff9faf8f71a19348feecp3@IFI27L2
4.48e-34FFCP PHASE2:Hg19::chr14:94595800..94595811,-#_ee90411dffb0ff9faf8f71a19348feecp3@IFI27L2
5.0e-34FFCP PHASE2:Hg19::chr7:102553470..102553487,+#_ff0b8cc03814df1374872f4f14b62139p2@LRRC17
5.0e-34FFCP PHASE1:Hg19::chr7:102553470..102553487,+#_ff0b8cc03814df1374872f4f14b62139p2@LRRC17
2.06e-33FFCP PHASE1:Hg19::chr9:35689148..35689192,+#_b8313cbfe81cf1c589c9defeff7a39edp@chr9:35689148..35689192, +
2.06e-33FFCP PHASE2:Hg19::chr9:35689148..35689192,+#_b8313cbfe81cf1c589c9defeff7a39edp@chr9:35689148..35689192, +
7.56e-33FFCP PHASE2:Hg19::chr7:102553430..102553456,+#_f416255670b6c49f3bbd063cbd20ce24p1@LRRC17
7.56e-33FFCP PHASE1:Hg19::chr7:102553430..102553456,+#_f416255670b6c49f3bbd063cbd20ce24p1@LRRC17
1.21e-32FFCP PHASE1:Hg19::chr21:47518695..47518709,+#_44be3e534787243b6fbb1fcd81835422p6@COL6A2
1.21e-32FFCP PHASE2:Hg19::chr21:47518695..47518709,+#_44be3e534787243b6fbb1fcd81835422p6@COL6A2
2.74e-32FFCP PHASE2:Hg19::chr21:47518637..47518688,+#_67daf2d160a940e9852a6f62f3a87480p2@COL6A2
2.74e-32FFCP PHASE1:Hg19::chr21:47518637..47518688,+#_67daf2d160a940e9852a6f62f3a87480p2@COL6A2
3.94e-32FFCP PHASE2:Mm9::chr7:96658543..96658553,-#_78bc0484562bddb310a10596a35bd310p@chr7:96658543..96658553, -
3.94e-32FFCP PHASE1:Mm9::chr7:96658543..96658553,-#_78bc0484562bddb310a10596a35bd310p@chr7:96658543..96658553, -
5.83e-32FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_daa6a4fb8ce57c8b8ff6f650754c8c21p@chr4:74703497..74703511, +
5.83e-32FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_daa6a4fb8ce57c8b8ff6f650754c8c21p@chr4:74703497..74703511, +
9.0e-32FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_a11ef9466c15293721be85a66ebecb35p@chr2:134548872..134548879, -
9.0e-32FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_a11ef9466c15293721be85a66ebecb35p@chr2:134548872..134548879, -
9.7e-32FFCP PHASE1:Hg19::chr9:35685273..35685313,+#_ba5c5d0ae651e082afdd960f714406c2p@chr9:35685273..35685313, +
9.7e-32FFCP PHASE2:Hg19::chr9:35685273..35685313,+#_ba5c5d0ae651e082afdd960f714406c2p@chr9:35685273..35685313, +
1.33e-31FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_4789c9dac0b0baaa2bbcd77a5277cf9ap@chr7:91081998..91082010, -
1.33e-31FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_4789c9dac0b0baaa2bbcd77a5277cf9ap@chr7:91081998..91082010, -
1.33e-31FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_4789c9dac0b0baaa2bbcd77a5277cf9ap2@Il6
1.33e-31FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_4789c9dac0b0baaa2bbcd77a5277cf9ap2@Il6
1.59e-31FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_deb1a82501841f8a99e432b82383596dp@chr10:67598037..67598049, -
1.59e-31FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_deb1a82501841f8a99e432b82383596dp@chr10:67598037..67598049, -
2.72e-31FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_716ba9ae96355e7c10a906589bdee7a7p@chr2:65009852..65009866, -
2.72e-31FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_716ba9ae96355e7c10a906589bdee7a7p@chr2:65009852..65009866, -
2.8e-31FFCP PHASE2:Mm9::chr18:52678391..52678395,-#_7694477f7e42d4f97bfb7e7fc084889ep@chr18:52678391..52678395, -
2.8e-31FFCP PHASE1:Mm9::chr18:52678391..52678395,-#_7694477f7e42d4f97bfb7e7fc084889ep@chr18:52678391..52678395, -
7.65e-31FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_bf91cebe61b27682d14b9efb05c0f387p@chr6:91222095..91222107, +
7.65e-31FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_bf91cebe61b27682d14b9efb05c0f387p@chr6:91222095..91222107, +
9.72e-31FFCP PHASE2:Hg19::chr1:79472477..79472510,-#_afe7d6a9df23ba9991dfc930805f1fdfp2@ELTD1
9.72e-31FFCP PHASE1:Hg19::chr1:79472477..79472510,-#_afe7d6a9df23ba9991dfc930805f1fdfp2@ELTD1
1.01e-30FFCP PHASE2:Hg19::chr7:100773764..100773799,-#_2946105c4b0cc3ebfce5ff404737d545p@chr7:100773764..100773799, -
1.01e-30FFCP PHASE2:Mm9::chr5:114822634..114822665,-#_46f1ba9dcb0fa94c357837513af62595p9@Kctd10
1.01e-30FFCP PHASE1:Mm9::chr5:114822634..114822665,-#_46f1ba9dcb0fa94c357837513af62595p9@Kctd10
1.01e-30FFCP PHASE1:Hg19::chr7:100773764..100773799,-#_2946105c4b0cc3ebfce5ff404737d545p@chr7:100773764..100773799, -
1.17e-30FFCP PHASE1:Mm9::chr1:127573773..127573786,+#_466d6f8844e6e0bd3d871d136cf236e9p6@Gpr39
1.17e-30FFCP PHASE2:Mm9::chr1:127573773..127573786,+#_466d6f8844e6e0bd3d871d136cf236e9p6@Gpr39
1.26e-30FFCP PHASE2:Hg19::chr12:53491743..53491754,+#_a893db1580c899edf56f49ce94976f59p1@AK074416
1.26e-30FFCP PHASE1:Hg19::chr12:53491743..53491754,+#_a893db1580c899edf56f49ce94976f59p1@AK074416
1.4e-30FFCP PHASE2:Hg19::chr7:93516035..93516056,+#_4424496fee03235a478152abae375a19p1@CU675118
1.4e-30FFCP PHASE1:Hg19::chr7:93516035..93516056,+#_4424496fee03235a478152abae375a19p1@CU675118
1.8e-30FFCP PHASE2:Hg19::chr21:47532318..47532355,+#_30d4dcf312b7d36cfcdb3b9f2072347dp8@COL6A2
1.8e-30FFCP PHASE1:Hg19::chr21:47532318..47532355,+#_30d4dcf312b7d36cfcdb3b9f2072347dp8@COL6A2
2.01e-30FFCP PHASE2:Hg19::chr2:33359687..33359717,+#_9057dfccac23dc3b33c86d55be6cea7ep2@LTBP1
2.01e-30FFCP PHASE1:Hg19::chr2:33359687..33359717,+#_9057dfccac23dc3b33c86d55be6cea7ep2@LTBP1
3.87e-30FFCP PHASE1:Hg19::chr21:47542827..47542859,-#_d3b713ecedf015e6af2490bbc9ce7497p@chr21:47542827..47542859, -
3.87e-30FFCP PHASE2:Hg19::chr21:47542827..47542859,-#_d3b713ecedf015e6af2490bbc9ce7497p@chr21:47542827..47542859, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0007282&oldid=3277894"