CL:0000540: Difference between revisions
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{{CL | {{CL | ||
| | |alt_id= | ||
|comment=These cells are also reportedly CD4-negative and CD200-positive. They are also capable of producing CD40L and IFN-gamma. | |comment=These cells are also reportedly CD4-negative and CD200-positive. They are also capable of producing CD40L and IFN-gamma. | ||
|created_by= | |created_by= | ||
| | |def="The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system." [MESH:A.08.663, MESH:D009474] | ||
|derives_from= | |derives_from= | ||
|develops_from=CL:0000031 | |develops_from=CL:0000031 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0000540 | |||
|is_a=CL:0000393 ;;CL:0000404 ;;CL:0002319 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=neuron | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl | |||
|subset= | |||
|synonym="nerve cell" EXACT [] | |||
|union_of= | |||
|xref=BTO:0000938;;FBbt:00005106;;FMA:54527;;WBbt:0003679 | |||
}} | }} | ||
Latest revision as of 16:34, 12 September 2014
| Name: | neuron | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system." [MESH:A.08.663, MESH:D009474] | ||
| Xrefs: |
| ||
| Synonyms: | "nerve cell" EXACT [] | ||
| Comments: | These cells are also reportedly CD4-negative and CD200-positive. They are also capable of producing CD40L and IFN-gamma. |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000393(electrically responsive cell),CL:0000404(electrically signaling cell),CL:0002319(neural cell) |
|---|---|
| develops_from: | CL:0000031(neuroblast) |
Children
| is a: | CL:0000107 (autonomic neuron),CL:0000526 (afferent neuron),CL:2000029 (central nervous system neuron) |
|---|---|
| derives from: | FF:0000203 (mouse neuron samples),FF:0000348 (human neuron samples),FF:0200005 (iPS differentiation to neuron sample),FF:0200030 (neurons - spiral ganglion sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11489-119E4 (Mouse Neurons - substantia nigra, donor4)
- 11490-119E5 (Mouse Neurons - substantia nigra, donor5)
- 11494-119E9 (Neurons, donor1)
- 11495-119F1
- 11574-120E8 (Neurons, donor2)
- 11575-120E9
- 11636-122C7 (Mouse Granule cells, donor3)
- 11642-122D4
- 11643-122D5 (Mouse Neurons - dorsal spinal cord, donor3)
- 11644-122D6 (Mouse Neurons - hippocampal, donor3)
... further results Mouse (Mus musculus)
- 11489-119E4 (Mouse Neurons - substantia nigra, donor4)
- 11490-119E5 (Mouse Neurons - substantia nigra, donor5)
- 11494-119E9 (Neurons, donor1)
- 11495-119F1
- 11574-120E8 (Neurons, donor2)
- 11575-120E9
- 11636-122C7 (Mouse Granule cells, donor3)
- 11642-122D4
- 11643-122D5 (Mouse Neurons - dorsal spinal cord, donor3)
- 11644-122D6 (Mouse Neurons - hippocampal, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000540 (neuron), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.83e-98 | FFCP PHASE1:Hg19::chr8:494169..494176,+#_b43b16b79016f9f84baa2463c7502ba1 | p@chr8:494169..494176, + |
| 1.83e-98 | FFCP PHASE2:Hg19::chr6:121759714..121759721,+#_b43b16b79016f9f84baa2463c7502ba1 | p@chr6:121759714..121759721, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr1:178235815..178235824,-#_b43b16b79016f9f84baa2463c7502ba1 | p@chr1:178235815..178235824, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr7:89853761..89853768,+#_b43b16b79016f9f84baa2463c7502ba1 | p@chr7:89853761..89853768, + |
| 1.83e-98 | FFCP PHASE2:Hg19::chr8:494169..494176,+#_b43b16b79016f9f84baa2463c7502ba1 | p@chr8:494169..494176, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr6:121759714..121759721,+#_b43b16b79016f9f84baa2463c7502ba1 | p@chr6:121759714..121759721, + |
| 1.83e-98 | FFCP PHASE2:Hg19::chr7:93269596..93269602,+#_b43b16b79016f9f84baa2463c7502ba1 | p@chr7:93269596..93269602, + |
| 1.83e-98 | FFCP PHASE2:Hg19::chr1:178235815..178235824,-#_b43b16b79016f9f84baa2463c7502ba1 | p@chr1:178235815..178235824, - |
| 1.83e-98 | FFCP PHASE2:Hg19::chr7:89853761..89853768,+#_b43b16b79016f9f84baa2463c7502ba1 | p@chr7:89853761..89853768, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr7:93269596..93269602,+#_b43b16b79016f9f84baa2463c7502ba1 | p@chr7:93269596..93269602, + |
| 1.83e-98 | FFCP PHASE2:Hg19::chr3:162430587..162430591,+#_b43b16b79016f9f84baa2463c7502ba1 | p@chr3:162430587..162430591, + |
| 1.83e-98 | FFCP PHASE2:Hg19::chr12:23738971..23738975,+#_b43b16b79016f9f84baa2463c7502ba1 | p@chr12:23738971..23738975, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr10:74804784..74804793,-#_b43b16b79016f9f84baa2463c7502ba1 | p@chr10:74804784..74804793, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr12:23738971..23738975,+#_b43b16b79016f9f84baa2463c7502ba1 | p@chr12:23738971..23738975, + |
| 1.83e-98 | FFCP PHASE2:Hg19::chr10:74804784..74804793,-#_b43b16b79016f9f84baa2463c7502ba1 | p@chr10:74804784..74804793, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr3:162430587..162430591,+#_b43b16b79016f9f84baa2463c7502ba1 | p@chr3:162430587..162430591, + |
| 6.82e-78 | FFCP PHASE2:Hg19::chr21:33976809..33976828,-#_25eb8c592e051ad155c5763770ecde53 | p9@C21orf59 |
| 6.82e-78 | FFCP PHASE1:Hg19::chr21:33976809..33976828,-#_25eb8c592e051ad155c5763770ecde53 | p9@C21orf59 |
| 2.58e-74 | FFCP PHASE2:Hg19::chr7:125557914..125557920,+#_dd4d1e54ee46d847ec8e5243205b3e7c | p1@ENST00000411856 |
| 2.58e-74 | FFCP PHASE2:Hg19::chr1:232254205..232254216,+#_dd4d1e54ee46d847ec8e5243205b3e7c | p@chr1:232254205..232254216, + |
| 2.58e-74 | FFCP PHASE1:Hg19::chr1:232254205..232254216,+#_dd4d1e54ee46d847ec8e5243205b3e7c | p@chr1:232254205..232254216, + |
| 2.58e-74 | FFCP PHASE2:Hg19::chr3:65939393..65939412,+#_dd4d1e54ee46d847ec8e5243205b3e7c | p@chr3:65939393..65939412, + |
| 2.58e-74 | FFCP PHASE1:Hg19::chr4:187163434..187163439,+#_dd4d1e54ee46d847ec8e5243205b3e7c | p@chr4:187163434..187163439, + |
| 2.58e-74 | FFCP PHASE1:Hg19::chr7:125557914..125557920,+#_dd4d1e54ee46d847ec8e5243205b3e7c | p1@ENST00000411856 |
| 2.58e-74 | FFCP PHASE2:Hg19::chr4:113571661..113571692,-#_dd4d1e54ee46d847ec8e5243205b3e7c | p1@ENST00000510655 |
| 2.58e-74 | FFCP PHASE2:Hg19::chr2:210164412..210164415,+#_dd4d1e54ee46d847ec8e5243205b3e7c | p@chr2:210164412..210164415, + |
| 2.58e-74 | FFCP PHASE1:Hg19::chr2:210164412..210164415,+#_dd4d1e54ee46d847ec8e5243205b3e7c | p@chr2:210164412..210164415, + |
| 2.58e-74 | FFCP PHASE1:Hg19::chr3:65939393..65939412,+#_dd4d1e54ee46d847ec8e5243205b3e7c | p@chr3:65939393..65939412, + |
| 2.58e-74 | FFCP PHASE1:Hg19::chr4:113571661..113571692,-#_dd4d1e54ee46d847ec8e5243205b3e7c | p1@ENST00000510655 |
| 2.58e-74 | FFCP PHASE2:Hg19::chr4:187163434..187163439,+#_dd4d1e54ee46d847ec8e5243205b3e7c | p@chr4:187163434..187163439, + |
| 3.31e-74 | FFCP PHASE1:Hg19::chr13:93868779..93868791,+#_0220c50bfd359f45e01544cc140f0aed | p@chr13:93868779..93868791, + |
| 3.31e-74 | FFCP PHASE2:Hg19::chr13:93868779..93868791,+#_0220c50bfd359f45e01544cc140f0aed | p@chr13:93868779..93868791, + |
| 4.26e-74 | FFCP PHASE1:Hg19::chr6:132234089..132234094,+#_757e6f4fb85178a524f2da1b4664e388 | p@chr6:132234089..132234094, + |
| 4.26e-74 | FFCP PHASE2:Hg19::chr6:132234089..132234094,+#_757e6f4fb85178a524f2da1b4664e388 | p@chr6:132234089..132234094, + |
| 5.47e-74 | FFCP PHASE1:Hg19::chrX:16141567..16141572,+#_c4d253404be23a1414107cb510b76a14 | p4@GRPR |
| 5.47e-74 | FFCP PHASE1:Hg19::chr13:54688155..54688160,-#_c4d253404be23a1414107cb510b76a14 | p@chr13:54688155..54688160, - |
| 5.47e-74 | FFCP PHASE2:Hg19::chrX:16141567..16141572,+#_c4d253404be23a1414107cb510b76a14 | p4@GRPR |
| 5.47e-74 | FFCP PHASE2:Hg19::chr13:54688155..54688160,-#_c4d253404be23a1414107cb510b76a14 | p@chr13:54688155..54688160, - |
| 2.2e-70 | FFCP PHASE1:Mm9::chr8:125944624..125944663,+#_013290c312f0c6e759a66c1dc0050a98 | p@chr8:125944624..125944663, + |
| 2.2e-70 | FFCP PHASE2:Mm9::chr8:125944624..125944663,+#_013290c312f0c6e759a66c1dc0050a98 | p@chr8:125944624..125944663, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr4:150954096..150954098,+#_dfb0d8497f710bc80eccfe742c38d820 | p@chr4:150954096..150954098, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr13:51745257..51745261,+#_dfb0d8497f710bc80eccfe742c38d820 | p@chr13:51745257..51745261, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chrY:28817276..28817283,-#_dfb0d8497f710bc80eccfe742c38d820 | p@chrY:28817276..28817283, - |
| 2.83e-66 | FFCP PHASE2:Hg19::chr19:33542309..33542310,+#_dfb0d8497f710bc80eccfe742c38d820 | p1@ENST00000463585 |
| 2.83e-66 | FFCP PHASE1:Hg19::chr15:53409038..53409040,+#_dfb0d8497f710bc80eccfe742c38d820 | p@chr15:53409038..53409040, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr4:188918405..188918406,+#_dfb0d8497f710bc80eccfe742c38d820 | p@chr4:188918405..188918406, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr19:33542309..33542310,+#_dfb0d8497f710bc80eccfe742c38d820 | p1@ENST00000463585 |
| 2.83e-66 | FFCP PHASE2:Hg19::chr4:188918405..188918406,+#_dfb0d8497f710bc80eccfe742c38d820 | p@chr4:188918405..188918406, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr15:53409038..53409040,+#_dfb0d8497f710bc80eccfe742c38d820 | p@chr15:53409038..53409040, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr20:31396411..31396416,+#_dfb0d8497f710bc80eccfe742c38d820 | p15@DNMT3B |
| 2.83e-66 | FFCP PHASE1:Hg19::chr4:150954096..150954098,+#_dfb0d8497f710bc80eccfe742c38d820 | p@chr4:150954096..150954098, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr13:51745257..51745261,+#_dfb0d8497f710bc80eccfe742c38d820 | p@chr13:51745257..51745261, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chrY:28817276..28817283,-#_dfb0d8497f710bc80eccfe742c38d820 | p@chrY:28817276..28817283, - |
| 2.83e-66 | FFCP PHASE1:Hg19::chr20:31396411..31396416,+#_dfb0d8497f710bc80eccfe742c38d820 | p15@DNMT3B |
| 8.15e-60 | FFCP PHASE2:Hg19::chr9:76707423..76707428,+#_d6960ea3c2e951d0a1437545e34adf20 | p@chr9:76707423..76707428, + |
| 8.15e-60 | FFCP PHASE1:Hg19::chr9:12948720..12948724,+#_d6960ea3c2e951d0a1437545e34adf20 | p@chr9:12948720..12948724, + |
| 8.15e-60 | FFCP PHASE1:Hg19::chr9:76707423..76707428,+#_d6960ea3c2e951d0a1437545e34adf20 | p@chr9:76707423..76707428, + |
| 8.15e-60 | FFCP PHASE2:Hg19::chr9:100199938..100199951,-#_d6960ea3c2e951d0a1437545e34adf20 | p@chr9:100199938..100199951, - |
| 8.15e-60 | FFCP PHASE1:Hg19::chr9:100199938..100199951,-#_d6960ea3c2e951d0a1437545e34adf20 | p@chr9:100199938..100199951, - |
| 8.15e-60 | FFCP PHASE2:Hg19::chr9:12948720..12948724,+#_d6960ea3c2e951d0a1437545e34adf20 | p@chr9:12948720..12948724, + |
| 9.96e-60 | FFCP PHASE1:Hg19::chr12:132280681..132280688,+#_8636ad4567f05f2ec0bf9c3d92822fbc | p3@SFSWAP |
| 9.96e-60 | FFCP PHASE2:Hg19::chr12:132280681..132280688,+#_8636ad4567f05f2ec0bf9c3d92822fbc | p3@SFSWAP |
| 1.22e-59 | FFCP PHASE1:Hg19::chr1:114574998..114575000,+#_40011443fc72fc231c2d5797db4b2275 | p@chr1:114574998..114575000, + |
| 1.22e-59 | FFCP PHASE1:Hg19::chr5:123833031..123833035,+#_40011443fc72fc231c2d5797db4b2275 | p@chr5:123833031..123833035, + |
| 1.22e-59 | FFCP PHASE2:Hg19::chr12:7942020..7942031,+#_40011443fc72fc231c2d5797db4b2275 | p2@NANOG |
| 1.22e-59 | FFCP PHASE1:Hg19::chr12:7942020..7942031,+#_40011443fc72fc231c2d5797db4b2275 | p2@NANOG |
| 1.22e-59 | FFCP PHASE2:Hg19::chr4:111540901..111540905,+#_40011443fc72fc231c2d5797db4b2275 | p@chr4:111540901..111540905, + |
| 1.22e-59 | FFCP PHASE2:Hg19::chr1:114574998..114575000,+#_40011443fc72fc231c2d5797db4b2275 | p@chr1:114574998..114575000, + |
| 1.22e-59 | FFCP PHASE1:Hg19::chr4:111540901..111540905,+#_40011443fc72fc231c2d5797db4b2275 | p@chr4:111540901..111540905, + |
| 1.22e-59 | FFCP PHASE2:Hg19::chr5:123833031..123833035,+#_40011443fc72fc231c2d5797db4b2275 | p@chr5:123833031..123833035, + |
| 1.49e-59 | FFCP PHASE2:Hg19::chr2:76920664..76920667,+#_fa53220fb5095fc9ab1b64e15aa2ed73 | p@chr2:76920664..76920667, + |
| 1.49e-59 | FFCP PHASE1:Hg19::chr2:76920664..76920667,+#_fa53220fb5095fc9ab1b64e15aa2ed73 | p@chr2:76920664..76920667, + |
| 1.49e-59 | FFCP PHASE1:Hg19::chr14:84428225..84428229,+#_fa53220fb5095fc9ab1b64e15aa2ed73 | p@chr14:84428225..84428229, + |
| 1.49e-59 | FFCP PHASE1:Hg19::chr7:99986543..99986546,+#_fa53220fb5095fc9ab1b64e15aa2ed73 | p@chr7:99986543..99986546, + |
| 1.49e-59 | FFCP PHASE2:Hg19::chr7:99986543..99986546,+#_fa53220fb5095fc9ab1b64e15aa2ed73 | p@chr7:99986543..99986546, + |
| 1.49e-59 | FFCP PHASE2:Hg19::chr14:84428225..84428229,+#_fa53220fb5095fc9ab1b64e15aa2ed73 | p@chr14:84428225..84428229, + |
| 1.82e-59 | FFCP PHASE1:Hg19::chr11:27657270..27657275,-#_994c7ae9b66f5f561be30b669ce81bdc | p@chr11:27657270..27657275, - |
| 1.82e-59 | FFCP PHASE2:Hg19::chr11:27657270..27657275,-#_994c7ae9b66f5f561be30b669ce81bdc | p@chr11:27657270..27657275, - |
| 2.72e-59 | FFCP PHASE2:Hg19::chr4:170861392..170861432,+#_b168c40ff4ebe04414d68858f68a7762 | p@chr4:170861392..170861432, + |
| 2.72e-59 | FFCP PHASE1:Hg19::chr4:170861392..170861432,+#_b168c40ff4ebe04414d68858f68a7762 | p@chr4:170861392..170861432, + |
| 5.43e-59 | FFCP PHASE1:Hg19::chr12:86727911..86727925,-#_fc5f2ea9e8dd4c4a04d5a6405a8d887b | p@chr12:86727911..86727925, - |
| 5.43e-59 | FFCP PHASE2:Hg19::chr12:86727911..86727925,-#_fc5f2ea9e8dd4c4a04d5a6405a8d887b | p@chr12:86727911..86727925, - |
| 1.11e-58 | FFCP PHASE1:Mm9::chr7:109167666..109167667,+#_f3deb365a9de8501507ff187c21132d8 | p@chr7:109167666..109167667, + |
| 1.11e-58 | FFCP PHASE2:Mm9::chr7:109167666..109167667,+#_f3deb365a9de8501507ff187c21132d8 | p@chr7:109167666..109167667, + |
| 1.36e-58 | FFCP PHASE1:Hg19::chr1:213164012..213164023,+#_8755f67963f838d761c9be50c3db7c13 | p@chr1:213164012..213164023, + |
| 1.36e-58 | FFCP PHASE2:Hg19::chr1:213164012..213164023,+#_8755f67963f838d761c9be50c3db7c13 | p@chr1:213164012..213164023, + |
| 2.28e-56 | FFCP PHASE2:Hg19::chr7:23146271..23146285,+#_50fa3ddc158365d5c85f5e0a65f01302 | p4@KLHL7 |
| 2.28e-56 | FFCP PHASE1:Hg19::chr7:23146271..23146285,+#_50fa3ddc158365d5c85f5e0a65f01302 | p4@KLHL7 |
| 8.29e-55 | FFCP PHASE2:Mm9::chr14:26427427..26427439,+#_ddb1ae2ae99151befee65a2728c0d3e8 | p22@Zmiz1 |
| 8.29e-55 | FFCP PHASE1:Mm9::chr14:26427427..26427439,+#_ddb1ae2ae99151befee65a2728c0d3e8 | p22@Zmiz1 |
| 2.41e-54 | FFCP PHASE2:Mm9::chr13:9279895..9279899,+#_bd77c32539fe14fdd54be7067ac2aef1 | p@chr13:9279895..9279899, + |
| 2.41e-54 | FFCP PHASE1:Mm9::chr13:9279895..9279899,+#_bd77c32539fe14fdd54be7067ac2aef1 | p@chr13:9279895..9279899, + |
| 7.68e-54 | FFCP PHASE2:Hg19::chr1:33231268..33231284,+#_6dbdc848ba943cfdb00730705d15b99c | p20@KIAA1522 |
| 7.68e-54 | FFCP PHASE1:Hg19::chr1:33231268..33231284,+#_6dbdc848ba943cfdb00730705d15b99c | p20@KIAA1522 |
| 4.63e-53 | FFCP PHASE2:Hg19::chr17:25672542..25672555,-#_df8b51abab190abf696661e461dd64dc | p@chr17:25672542..25672555, - |
| 4.63e-53 | FFCP PHASE1:Hg19::chr17:25672542..25672555,-#_df8b51abab190abf696661e461dd64dc | p@chr17:25672542..25672555, - |
| 1.37e-52 | FFCP PHASE2:Hg19::chr19:55823957..55823960,-#_b31ce4aeba25b775260b7eb87fea0acc | p@chr19:55823957..55823960, - |
| 1.37e-52 | FFCP PHASE1:Hg19::chr19:55823957..55823960,-#_b31ce4aeba25b775260b7eb87fea0acc | p@chr19:55823957..55823960, - |
| 1.31e-50 | FFCP PHASE1:Mm9::chr8:125944694..125944740,+#_61631972aebca939072fac7dbe6363ae | p@chr8:125944694..125944740, + |
| 1.31e-50 | FFCP PHASE2:Mm9::chr8:125944694..125944740,+#_61631972aebca939072fac7dbe6363ae | p@chr8:125944694..125944740, + |
