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{{CL
{{CL
|id=CL:0000589
|alt_id=
|name=cochlear inner hair cell
|namespace=cell
|def="A bulbous cell that is medially placed in one row in the organ of Corti. In contrast to the outer hair cells, the inner hair cells are fewer in number, have fewer sensory hairs, and are less differentiated." [MESH:A.08.663.650.250.250]
|xref=BTO:0003667;;FMA:62365
|is_a=CL:0000202
|synonym="inner hair cell" BROAD []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A bulbous cell that is medially placed in one row in the organ of Corti. In contrast to the outer hair cells, the inner hair cells are fewer in number, have fewer sensory hairs, and are less differentiated." [MESH:A.08.663.650.250.250]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000589
|is_a=CL:0000202
|is_obsolete=
|located_in=
|located_in=
|name=cochlear inner hair cell
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002227
|part_of=UBERON:0002227
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym="inner hair cell" BROAD []
|union_of=
|xref=BTO:0003667;;FMA:62365
}}
}}

Latest revision as of 16:35, 12 September 2014

Name:cochlear inner hair cell
Namespace:FANTOM
Definition:"A bulbous cell that is medially placed in one row in the organ of Corti. In contrast to the outer hair cells, the inner hair cells are fewer in number, have fewer sensory hairs, and are less differentiated." [MESH:A.08.663.650.250.250]
Xrefs:
links:

BTO:0003667

FMA:62365
Synonyms: "inner hair cell" BROAD []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000202(auditory hair cell)
part_of:UBERON:0002227(spiral organ of cochlea)



Children


derives from:FF:0000264 (mouse inner hair cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)

Mouse (Mus musculus)

  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000589 (cochlear inner hair cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.07e-86FFCP PHASE2:Mm9::chr5:72652671..72652676,+#_ee9328411b3f99b904159f500e945747p@chr5:72652671..72652676, +
3.07e-86FFCP PHASE1:Mm9::chr4:106770202..106770208,+#_ee9328411b3f99b904159f500e945747p@chr4:106770202..106770208, +
3.07e-86FFCP PHASE1:Mm9::chr19:10535924..10535927,-#_ee9328411b3f99b904159f500e945747p@chr19:10535924..10535927, -
3.07e-86FFCP PHASE1:Mm9::chr17:34185343..34185356,+#_ee9328411b3f99b904159f500e945747p7@Col11a2
3.07e-86FFCP PHASE2:Mm9::chr2:142906965..142906982,-#_ee9328411b3f99b904159f500e945747p@chr2:142906965..142906982, -
3.07e-86FFCP PHASE1:Mm9::chr13:31171742..31171745,-#_ee9328411b3f99b904159f500e945747p@chr13:31171742..31171745, -
3.07e-86FFCP PHASE1:Mm9::chr6:83129695..83129696,+#_ee9328411b3f99b904159f500e945747p24@Dctn1
3.07e-86FFCP PHASE1:Mm9::chr10:18246142..18246145,+#_ee9328411b3f99b904159f500e945747p@chr10:18246142..18246145, +
3.07e-86FFCP PHASE1:Mm9::chr9:92087990..92087995,+#_ee9328411b3f99b904159f500e945747p3@Plscr5
3.07e-86FFCP PHASE1:Mm9::chr11:114652018..114652020,+#_ee9328411b3f99b904159f500e945747p@chr11:114652018..114652020, +
3.07e-86FFCP PHASE2:Mm9::chr6:36966723..36966734,-#_ee9328411b3f99b904159f500e945747p@chr6:36966723..36966734, -
3.07e-86FFCP PHASE2:Mm9::chr9:92087990..92087995,+#_ee9328411b3f99b904159f500e945747p3@Plscr5
3.07e-86FFCP PHASE2:Mm9::chr17:34185389..34185401,+#_ee9328411b3f99b904159f500e945747p8@Col11a2
3.07e-86FFCP PHASE1:Mm9::chr15:97828021..97828028,-#_ee9328411b3f99b904159f500e945747p@chr15:97828021..97828028, -
3.07e-86FFCP PHASE2:Mm9::chr11:94371110..94371111,-#_ee9328411b3f99b904159f500e945747p@chr11:94371110..94371111, -
3.07e-86FFCP PHASE1:Mm9::chr8:94283075..94283082,+#_ee9328411b3f99b904159f500e945747p@chr8:94283075..94283082, +
3.07e-86FFCP PHASE2:Mm9::chr3:127520184..127520191,-#_ee9328411b3f99b904159f500e945747p@chr3:127520184..127520191, -
3.07e-86FFCP PHASE1:Mm9::chr2:12032746..12032751,-#_ee9328411b3f99b904159f500e945747p@chr2:12032746..12032751, -
3.07e-86FFCP PHASE2:Mm9::chr6:83129695..83129696,+#_ee9328411b3f99b904159f500e945747p24@Dctn1
3.07e-86FFCP PHASE2:Mm9::chr17:15466888..15466898,-#_ee9328411b3f99b904159f500e945747p@chr17:15466888..15466898, -
3.07e-86FFCP PHASE1:Mm9::chr17:34185362..34185370,+#_ee9328411b3f99b904159f500e945747p10@Col11a2
3.07e-86FFCP PHASE2:Mm9::chr2:142907424..142907448,-#_ee9328411b3f99b904159f500e945747p@chr2:142907424..142907448, -
3.07e-86FFCP PHASE1:Mm9::chr6:64684505..64684512,+#_ee9328411b3f99b904159f500e945747p@chr6:64684505..64684512, +
3.07e-86FFCP PHASE1:Mm9::chr17:15466888..15466898,-#_ee9328411b3f99b904159f500e945747p@chr17:15466888..15466898, -
3.07e-86FFCP PHASE2:Mm9::chr11:114652018..114652020,+#_ee9328411b3f99b904159f500e945747p@chr11:114652018..114652020, +
3.07e-86FFCP PHASE1:Mm9::chr2:180335744..180335746,+#_ee9328411b3f99b904159f500e945747p@chr2:180335744..180335746, +
3.07e-86FFCP PHASE1:Mm9::chr5:72652671..72652676,+#_ee9328411b3f99b904159f500e945747p@chr5:72652671..72652676, +
3.07e-86FFCP PHASE2:Mm9::chr6:36966993..36966996,-#_ee9328411b3f99b904159f500e945747p@chr6:36966993..36966996, -
3.07e-86FFCP PHASE1:Mm9::chr3:127520184..127520191,-#_ee9328411b3f99b904159f500e945747p@chr3:127520184..127520191, -
3.07e-86FFCP PHASE1:Mm9::chr6:36966723..36966734,-#_ee9328411b3f99b904159f500e945747p@chr6:36966723..36966734, -
3.07e-86FFCP PHASE2:Mm9::chr9:87599703..87599714,-#_ee9328411b3f99b904159f500e945747p@chr9:87599703..87599714, -
3.07e-86FFCP PHASE2:Mm9::chr6:64684505..64684512,+#_ee9328411b3f99b904159f500e945747p@chr6:64684505..64684512, +
3.07e-86FFCP PHASE2:Mm9::chr8:94283075..94283082,+#_ee9328411b3f99b904159f500e945747p@chr8:94283075..94283082, +
3.07e-86FFCP PHASE1:Mm9::chr9:87599703..87599714,-#_ee9328411b3f99b904159f500e945747p@chr9:87599703..87599714, -
3.07e-86FFCP PHASE1:Mm9::chr17:34185378..34185383,+#_ee9328411b3f99b904159f500e945747p11@Col11a2
3.07e-86FFCP PHASE2:Mm9::chr17:34185343..34185356,+#_ee9328411b3f99b904159f500e945747p7@Col11a2
3.07e-86FFCP PHASE2:Mm9::chr15:91379135..91379143,-#_ee9328411b3f99b904159f500e945747p@chr15:91379135..91379143, -
3.07e-86FFCP PHASE2:Mm9::chr19:10535924..10535927,-#_ee9328411b3f99b904159f500e945747p@chr19:10535924..10535927, -
3.07e-86FFCP PHASE1:Mm9::chr2:142906965..142906982,-#_ee9328411b3f99b904159f500e945747p@chr2:142906965..142906982, -
3.07e-86FFCP PHASE1:Mm9::chr2:53464193..53464197,+#_ee9328411b3f99b904159f500e945747p@chr2:53464193..53464197, +
3.07e-86FFCP PHASE1:Mm9::chr11:94371110..94371111,-#_ee9328411b3f99b904159f500e945747p@chr11:94371110..94371111, -
3.07e-86FFCP PHASE2:Mm9::chr2:53464193..53464197,+#_ee9328411b3f99b904159f500e945747p@chr2:53464193..53464197, +
3.07e-86FFCP PHASE1:Mm9::chr6:36966993..36966996,-#_ee9328411b3f99b904159f500e945747p@chr6:36966993..36966996, -
3.07e-86FFCP PHASE2:Mm9::chr18:66033513..66033517,-#_ee9328411b3f99b904159f500e945747p@chr18:66033513..66033517, -
3.07e-86FFCP PHASE2:Mm9::chr4:106770202..106770208,+#_ee9328411b3f99b904159f500e945747p@chr4:106770202..106770208, +
3.07e-86FFCP PHASE2:Mm9::chr6:64684637..64684654,+#_ee9328411b3f99b904159f500e945747p@chr6:64684637..64684654, +
3.07e-86FFCP PHASE1:Mm9::chr6:64684637..64684654,+#_ee9328411b3f99b904159f500e945747p@chr6:64684637..64684654, +
3.07e-86FFCP PHASE2:Mm9::chr2:12032746..12032751,-#_ee9328411b3f99b904159f500e945747p@chr2:12032746..12032751, -
3.07e-86FFCP PHASE1:Mm9::chr17:34185389..34185401,+#_ee9328411b3f99b904159f500e945747p8@Col11a2
3.07e-86FFCP PHASE1:Mm9::chr18:66033513..66033517,-#_ee9328411b3f99b904159f500e945747p@chr18:66033513..66033517, -
3.07e-86FFCP PHASE2:Mm9::chr17:34185362..34185370,+#_ee9328411b3f99b904159f500e945747p10@Col11a2
3.07e-86FFCP PHASE1:Mm9::chr2:142907424..142907448,-#_ee9328411b3f99b904159f500e945747p@chr2:142907424..142907448, -
3.07e-86FFCP PHASE2:Mm9::chr13:31171742..31171745,-#_ee9328411b3f99b904159f500e945747p@chr13:31171742..31171745, -
3.07e-86FFCP PHASE1:Mm9::chr15:91379135..91379143,-#_ee9328411b3f99b904159f500e945747p@chr15:91379135..91379143, -
3.07e-86FFCP PHASE2:Mm9::chr16:55283394..55283400,-#_ee9328411b3f99b904159f500e945747p1@Zpld1
3.07e-86FFCP PHASE2:Mm9::chr15:97828021..97828028,-#_ee9328411b3f99b904159f500e945747p@chr15:97828021..97828028, -
3.07e-86FFCP PHASE2:Mm9::chr6:64684692..64684697,+#_ee9328411b3f99b904159f500e945747p@chr6:64684692..64684697, +
3.07e-86FFCP PHASE1:Mm9::chr6:64684692..64684697,+#_ee9328411b3f99b904159f500e945747p@chr6:64684692..64684697, +
3.07e-86FFCP PHASE2:Mm9::chr2:180335744..180335746,+#_ee9328411b3f99b904159f500e945747p@chr2:180335744..180335746, +
3.07e-86FFCP PHASE1:Mm9::chr16:55283394..55283400,-#_ee9328411b3f99b904159f500e945747p1@Zpld1
3.07e-86FFCP PHASE2:Mm9::chr10:18246142..18246145,+#_ee9328411b3f99b904159f500e945747p@chr10:18246142..18246145, +
3.07e-86FFCP PHASE2:Mm9::chr17:34185378..34185383,+#_ee9328411b3f99b904159f500e945747p11@Col11a2
2.74e-44FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_fd0bf386598054188f3f1be4ae0659c5p@chr8:13414266..13414279, +
2.74e-44FFCP PHASE1:Mm9::chr3:106986057..106986062,+#_fd0bf386598054188f3f1be4ae0659c5p1@Kcna10
2.74e-44FFCP PHASE2:Mm9::chr10:67371994..67372010,+#_fd0bf386598054188f3f1be4ae0659c5p@chr10:67371994..67372010, +
2.74e-44FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_fd0bf386598054188f3f1be4ae0659c5p2@Otof
2.74e-44FFCP PHASE1:Mm9::chr15:85334335..85334353,+#_fd0bf386598054188f3f1be4ae0659c5p@chr15:85334335..85334353, +
2.74e-44FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_fd0bf386598054188f3f1be4ae0659c5p@chr2:73232344..73232356, -
2.74e-44FFCP PHASE2:Mm9::chr1:172843885..172843890,-#_fd0bf386598054188f3f1be4ae0659c5p@chr1:172843885..172843890, -
2.74e-44FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_fd0bf386598054188f3f1be4ae0659c5p@chr14:20649897..20649907, +
2.74e-44FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_fd0bf386598054188f3f1be4ae0659c5p@chr2:75320183..75320189, +
2.74e-44FFCP PHASE1:Mm9::chr1:172843885..172843890,-#_fd0bf386598054188f3f1be4ae0659c5p@chr1:172843885..172843890, -
2.74e-44FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_fd0bf386598054188f3f1be4ae0659c5p@chr19:10536797..10536802, -
2.74e-44FFCP PHASE1:Mm9::chr6:113251606..113251613,+#_fd0bf386598054188f3f1be4ae0659c5p@chr6:113251606..113251613, +
2.74e-44FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_fd0bf386598054188f3f1be4ae0659c5p@chr14:47293496..47293510, -
2.74e-44FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_fd0bf386598054188f3f1be4ae0659c5p@chr13:43699228..43699239, +
2.74e-44FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_fd0bf386598054188f3f1be4ae0659c5p@chr1:182528371..182528385, +
2.74e-44FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_fd0bf386598054188f3f1be4ae0659c5p41@Cacnb2
2.74e-44FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_fd0bf386598054188f3f1be4ae0659c5p@chr1:60561636..60561645, -
2.74e-44FFCP PHASE2:Mm9::chr11:102123535..102123544,+#_fd0bf386598054188f3f1be4ae0659c5p5@BC030867
2.74e-44FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_fd0bf386598054188f3f1be4ae0659c5p9@Ankrd24
2.74e-44FFCP PHASE1:Mm9::chr1:93235228..93235249,+#_fd0bf386598054188f3f1be4ae0659c5p@chr1:93235228..93235249, +
2.74e-44FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_fd0bf386598054188f3f1be4ae0659c5p@chr12:109905399..109905416, +
2.74e-44FFCP PHASE1:Mm9::chr2:121206695..121206711,-#_fd0bf386598054188f3f1be4ae0659c5p1@Strc
2.74e-44FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_fd0bf386598054188f3f1be4ae0659c5p@chrX:154140781..154140788, +
2.74e-44FFCP PHASE2:Mm9::chr11:89702580..89702593,-#_fd0bf386598054188f3f1be4ae0659c5p@chr11:89702580..89702593, -
2.74e-44FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_fd0bf386598054188f3f1be4ae0659c5p@chr13:37195838..37195870, -
2.74e-44FFCP PHASE2:Mm9::chr10:80806047..80806059,-#_fd0bf386598054188f3f1be4ae0659c5p4@Gipc3
2.74e-44FFCP PHASE2:Mm9::chr4:154208086..154208123,+#_fd0bf386598054188f3f1be4ae0659c5p@chr4:154208086..154208123, +
2.74e-44FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_fd0bf386598054188f3f1be4ae0659c5p5@Fer1l6
2.74e-44FFCP PHASE2:Mm9::chr12:109905468..109905474,+#_fd0bf386598054188f3f1be4ae0659c5p@chr12:109905468..109905474, +
2.74e-44FFCP PHASE2:Mm9::chr11:75421384..75421397,+#_fd0bf386598054188f3f1be4ae0659c5p@chr11:75421384..75421397, +
2.74e-44FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_fd0bf386598054188f3f1be4ae0659c5p4@Gipc3
2.74e-44FFCP PHASE2:Mm9::chr15:89215333..89215341,+#_fd0bf386598054188f3f1be4ae0659c5p@chr15:89215333..89215341, +
2.74e-44FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_fd0bf386598054188f3f1be4ae0659c5p@chr17:13983198..13983203, +
2.74e-44FFCP PHASE2:Mm9::chr14:63099970..63099980,-#_fd0bf386598054188f3f1be4ae0659c5p@chr14:63099970..63099980, -
2.74e-44FFCP PHASE2:Mm9::chr5:28035962..28035983,+#_fd0bf386598054188f3f1be4ae0659c5p@chr5:28035962..28035983, +
2.74e-44FFCP PHASE2:Mm9::chr7:109052297..109052300,-#_fd0bf386598054188f3f1be4ae0659c5p2@Tomt
2.74e-44FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_fd0bf386598054188f3f1be4ae0659c5p2@Gpr152
2.74e-44FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_fd0bf386598054188f3f1be4ae0659c5p1@Gm1322

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