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{{CL
{{CL
|id=CL:0002620
|alt_id=
|name=skin fibroblast
|namespace=cell
|def="A fibroblast of skin." [GOC:tfm]
|xref=BTO:0001255
|is_a=CL:0000057
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-14T12:31:49Z
|def="A fibroblast of skin." [GOC:tfm]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002620
|is_a=CL:0000057
|is_obsolete=
|located_in=
|located_in=
|name=skin fibroblast
|namespace=FANTOM
|obo_creation_date=2011-03-14T12:31:49Z
|part_of=UBERON:0002097
|part_of=UBERON:0002097
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym=
|union_of=
|xref=BTO:0001255
}}
}}

Latest revision as of 16:46, 12 September 2014

Name:skin fibroblast
Namespace:FANTOM
Definition:"A fibroblast of skin." [GOC:tfm]
Xrefs:
links:
BTO:0001255
Created by:tmeehan
Creation date:2011-03-14T12:31:49Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000057(fibroblast)
part_of:UBERON:0002097(skin of body)



Children


is a:CL:0002551 (fibroblast of dermis),FF:10600-108E6 (myxofibrosarcoma cell line:MFH-ino),FF:10684-109E9 (myxofibrosarcoma cell line:NMFH-1)
derives from:FF:0000250 (human fibroblast of skin sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002620 (skin fibroblast), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.28e-79FFCP PHASE1:Hg19::chr13:24044200..24044211,+#_69afc2362cd47caecbac35b4ed413c82p2@LINC00327
5.28e-79FFCP PHASE2:Hg19::chr13:24044200..24044211,+#_69afc2362cd47caecbac35b4ed413c82p2@LINC00327
8.25e-75FFCP PHASE2:Hg19::chr4:184271970..184271992,-#_cd8e8a4d931ee4d2f547bee29ae9a459p@chr4:184271970..184271992, -
8.25e-75FFCP PHASE1:Hg19::chr4:184271970..184271992,-#_cd8e8a4d931ee4d2f547bee29ae9a459p@chr4:184271970..184271992, -
3.0e-69FFCP PHASE1:Hg19::chr22:48819856..48819861,+#_b2137156d4ec73abfc39c5cea573d675p@chr22:48819856..48819861, +
3.0e-69FFCP PHASE2:Hg19::chr22:48819856..48819861,+#_b2137156d4ec73abfc39c5cea573d675p@chr22:48819856..48819861, +
1.73e-68FFCP PHASE1:Hg19::chr13:24044226..24044237,+#_d902ba5ca429526dffcbef1afb960859p1@LINC00327
1.73e-68FFCP PHASE2:Hg19::chr13:24044226..24044237,+#_d902ba5ca429526dffcbef1afb960859p1@LINC00327
2.25e-64FFCP PHASE1:Hg19::chr15:33180498..33180522,-#_f9ac078cc1bca3493594eed3e11b7270p4@FMN1
2.25e-64FFCP PHASE2:Hg19::chr15:33180498..33180522,-#_f9ac078cc1bca3493594eed3e11b7270p4@FMN1
2.96e-62FFCP PHASE1:Hg19::chr1:197886772..197886790,+#_b0b5a9a6b40943104228f92fc176d479p4@LHX9
2.96e-62FFCP PHASE2:Hg19::chr1:197886772..197886790,+#_b0b5a9a6b40943104228f92fc176d479p4@LHX9
5.44e-61FFCP PHASE2:Hg19::chr1:198636258..198636278,-#_8978a4c66efa2ddfcabe07d5d64f80aep1@ENST00000413577
5.44e-61FFCP PHASE1:Hg19::chr1:198636258..198636278,-#_8978a4c66efa2ddfcabe07d5d64f80aep1@ENST00000413577
6.11e-60FFCP PHASE1:Hg19::chr15:33180622..33180633,-#_f6186c532842ecfaac0dae0a397c04f2p13@FMN1
6.11e-60FFCP PHASE2:Hg19::chr15:33180622..33180633,-#_f6186c532842ecfaac0dae0a397c04f2p13@FMN1
1.75e-59FFCP PHASE1:Hg19::chr1:198636234..198636246,-#_c7732738dcaec016d870c8dd9f28df0dp2@ENST00000413577
1.75e-59FFCP PHASE2:Hg19::chr1:198636234..198636246,-#_c7732738dcaec016d870c8dd9f28df0dp2@ENST00000413577
2.81e-57FFCP PHASE2:Hg19::chr15:33180558..33180570,-#_c28a75961c4aae95731c5cebbfe0ad80p9@FMN1
2.81e-57FFCP PHASE1:Hg19::chr15:33180558..33180570,-#_c28a75961c4aae95731c5cebbfe0ad80p9@FMN1
2.16e-56FFCP PHASE2:Hg19::chr14:38371323..38371347,-#_7493c8669eb0c36ca97f0cda106c009ep1@ENST00000554257, p1@uc001wuk.1
2.16e-56FFCP PHASE1:Hg19::chr14:38371323..38371347,-#_7493c8669eb0c36ca97f0cda106c009ep1@ENST00000554257, p1@uc001wuk.1
4.55e-54FFCP PHASE1:Hg19::chr1:197886421..197886432,+#_4f7c584d9e862267162b1ef34b4753b0p2@LHX9
4.55e-54FFCP PHASE2:Hg19::chr1:197886421..197886432,+#_4f7c584d9e862267162b1ef34b4753b0p2@LHX9
1.36e-53FFCP PHASE1:Hg19::chr14:32963433..32963487,+#_c953bf70d92f8a474143de9870054b04p4@AKAP6
1.36e-53FFCP PHASE2:Hg19::chr14:32963433..32963487,+#_c953bf70d92f8a474143de9870054b04p4@AKAP6
1.37e-52FFCP PHASE1:Hg19::chr1:198636401..198636419,-#_c570acd66874668ecccc5c4b0cd4e4d1p3@ENST00000413577
1.37e-52FFCP PHASE2:Hg19::chr1:198636401..198636419,-#_c570acd66874668ecccc5c4b0cd4e4d1p3@ENST00000413577
5.26e-49FFCP PHASE1:Hg19::chr12:88813132..88813143,-#_56d09f05117b8118ff98c3197af05fefp@chr12:88813132..88813143, -
5.26e-49FFCP PHASE2:Hg19::chr12:88813132..88813143,-#_56d09f05117b8118ff98c3197af05fefp@chr12:88813132..88813143, -
7.25e-49FFCP PHASE1:Hg19::chr1:197886646..197886657,+#_1cd0258c217401b843e0ad72f2f97396p5@LHX9
7.25e-49FFCP PHASE2:Hg19::chr1:197886646..197886657,+#_1cd0258c217401b843e0ad72f2f97396p5@LHX9
8.98e-46FFCP PHASE1:Hg19::chr6:140893217..140893243,-#_bf35dbb9eb6141f914b3bddba9cfad04p@chr6:140893217..140893243, -
8.98e-46FFCP PHASE2:Hg19::chr6:140893217..140893243,-#_bf35dbb9eb6141f914b3bddba9cfad04p@chr6:140893217..140893243, -
3.79e-45FFCP PHASE1:Hg19::chr5:167087144..167087148,-#_8ae8414b1dfd3401f8aa89b3633f03efp1@ENST00000522956
3.79e-45FFCP PHASE2:Hg19::chr5:167087144..167087148,-#_8ae8414b1dfd3401f8aa89b3633f03efp1@ENST00000522956
2.97e-44FFCP PHASE1:Hg19::chr3:58021410..58021424,+#_8aeb73aefc29f37a787af1072c3da5acp@chr3:58021410..58021424, +
2.97e-44FFCP PHASE2:Hg19::chr3:58021410..58021424,+#_8aeb73aefc29f37a787af1072c3da5acp@chr3:58021410..58021424, +
1.0e-42FFCP PHASE1:Hg19::chr21:28336890..28336913,-#_2111c8b682f7ad59a124dc4d3000ad86p@chr21:28336890..28336913, -
1.0e-42FFCP PHASE2:Hg19::chr21:28336890..28336913,-#_2111c8b682f7ad59a124dc4d3000ad86p@chr21:28336890..28336913, -
1.22e-42FFCP PHASE1:Hg19::chr1:115782479..115782490,+#_c749acfcae969b7da29577b63e40cdf5p@chr1:115782479..115782490, +
1.22e-42FFCP PHASE2:Hg19::chr1:115782479..115782490,+#_c749acfcae969b7da29577b63e40cdf5p@chr1:115782479..115782490, +
1.99e-42FFCP PHASE1:Hg19::chr6:113697400..113697411,-#_97dadb064a408429d36f71e4b6314f62p@chr6:113697400..113697411, -
1.99e-42FFCP PHASE2:Hg19::chr6:113697400..113697411,-#_97dadb064a408429d36f71e4b6314f62p@chr6:113697400..113697411, -
2.44e-42FFCP PHASE1:Hg19::chr1:197886665..197886732,+#_0c2fc39607609f025da789e390f82381p3@LHX9
2.44e-42FFCP PHASE2:Hg19::chr1:197886665..197886732,+#_0c2fc39607609f025da789e390f82381p3@LHX9
2.91e-42FFCP PHASE2:Hg19::chr8:23564380..23564391,+#_520414c9276135e7228357afd8136b30p1@ENST00000523874
2.91e-42FFCP PHASE1:Hg19::chr8:23564380..23564391,+#_520414c9276135e7228357afd8136b30p1@ENST00000523874
2.41e-40FFCP PHASE2:Hg19::chr17:1936721..1936751,+#_b0982d3b72cfa8c5931aa914d64142c8p3@DPH1
2.41e-40FFCP PHASE1:Hg19::chr17:1936721..1936751,+#_b0982d3b72cfa8c5931aa914d64142c8p3@DPH1
1.09e-39FFCP PHASE2:Hg19::chr6:113697548..113697566,-#_5582a90f4a40af6b9a7f7947fccfbc23p@chr6:113697548..113697566, -
1.09e-39FFCP PHASE1:Hg19::chr6:113697548..113697566,-#_5582a90f4a40af6b9a7f7947fccfbc23p@chr6:113697548..113697566, -
1.11e-38FFCP PHASE2:Hg19::chr5:167181769..167181798,+#_16018e8b0f0d1fa1016651cad49e903ep17@ODZ2
1.11e-38FFCP PHASE1:Hg19::chr5:167181769..167181798,+#_16018e8b0f0d1fa1016651cad49e903ep17@ODZ2
2.23e-38FFCP PHASE1:Hg19::chr2:239778648..239778664,+#_1aaf30f0667990e5d86fa4f6d3bba673p@chr2:239778648..239778664, +
2.23e-38FFCP PHASE2:Hg19::chr2:239778648..239778664,+#_1aaf30f0667990e5d86fa4f6d3bba673p@chr2:239778648..239778664, +
2.45e-38FFCP PHASE1:Hg19::chr18:52969844..52969895,-#_d91689a2f8c92d7b9e80817ddcce6f04p27@TCF4
2.45e-38FFCP PHASE2:Hg19::chr18:52969844..52969895,-#_d91689a2f8c92d7b9e80817ddcce6f04p27@TCF4
2.79e-38FFCP PHASE2:Hg19::chr12:51986236..51986261,-#_d9b8defca948366a8339cbb4687387dep@chr12:51986236..51986261, -
2.79e-38FFCP PHASE1:Hg19::chr12:51986236..51986261,-#_d9b8defca948366a8339cbb4687387dep@chr12:51986236..51986261, -
4.55e-38FFCP PHASE2:Hg19::chr1:197889151..197889159,+#_2c9a4fd4fe2d3126a49745e3756700ffp@chr1:197889151..197889159, +
4.55e-38FFCP PHASE1:Hg19::chr1:197889151..197889159,+#_2c9a4fd4fe2d3126a49745e3756700ffp@chr1:197889151..197889159, +
6.71e-38FFCP PHASE2:Hg19::chr5:167148342..167148357,+#_ca4c98027ab9d92e8b66b134e1c52d66p1@ENST00000517346
6.71e-38FFCP PHASE1:Hg19::chr5:167148342..167148357,+#_ca4c98027ab9d92e8b66b134e1c52d66p1@ENST00000517346
7.92e-38FFCP PHASE1:Hg19::chr2:36784074..36784084,-#_ffd70640dbbbfebd12a948c7fcd57baap@chr2:36784074..36784084, -
7.92e-38FFCP PHASE2:Hg19::chr2:36784074..36784084,-#_ffd70640dbbbfebd12a948c7fcd57baap@chr2:36784074..36784084, -
1.37e-37FFCP PHASE1:Hg19::chr7:84122019..84122030,-#_e16fecf353bc522a2fdd00bc28a7cd77p18@SEMA3A
1.37e-37FFCP PHASE2:Hg19::chr7:84122019..84122030,-#_e16fecf353bc522a2fdd00bc28a7cd77p18@SEMA3A
4.82e-37FFCP PHASE2:Hg19::chr7:84121947..84121959,-#_d746fb8c7beef84e3bf5779e87903871p12@SEMA3A
4.82e-37FFCP PHASE1:Hg19::chr7:84121947..84121959,-#_d746fb8c7beef84e3bf5779e87903871p12@SEMA3A
7.5e-37FFCP PHASE2:Hg19::chr6:140985056..140985096,-#_47aaf88e53509cfce95695be288e6ec9p@chr6:140985056..140985096, -
7.5e-37FFCP PHASE1:Hg19::chr6:140985056..140985096,-#_47aaf88e53509cfce95695be288e6ec9p@chr6:140985056..140985096, -
3.48e-36FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_701b99e97742ccb3becb05bf50d0bac3p12@FBN2
3.48e-36FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_701b99e97742ccb3becb05bf50d0bac3p12@FBN2
4.93e-36FFCP PHASE2:Hg19::chr9:132472174..132472192,+#_8e7124899f4cedb184d813bad9ab5091p@chr9:132472174..132472192, +
4.93e-36FFCP PHASE1:Hg19::chr9:132472174..132472192,+#_8e7124899f4cedb184d813bad9ab5091p@chr9:132472174..132472192, +
5.38e-36FFCP PHASE2:Hg19::chr12:88801610..88801614,-#_77ca711afa49f2cbcf4ac81561145603p@chr12:88801610..88801614, -
5.38e-36FFCP PHASE1:Hg19::chr12:88801610..88801614,-#_77ca711afa49f2cbcf4ac81561145603p@chr12:88801610..88801614, -
6.14e-36FFCP PHASE1:Hg19::chr19:43690649..43690663,-#_507ebea4dac706786ca541444475579dp2@PSG5
6.14e-36FFCP PHASE2:Hg19::chr19:43690649..43690663,-#_507ebea4dac706786ca541444475579dp2@PSG5
6.47e-36FFCP PHASE1:Hg19::chr1:240256439..240256449,-#_2fed3581c12e17157ee2c7a59c7f951bp@chr1:240256439..240256449, -
6.47e-36FFCP PHASE2:Hg19::chr1:240256439..240256449,-#_2fed3581c12e17157ee2c7a59c7f951bp@chr1:240256439..240256449, -
1.33e-35FFCP PHASE1:Hg19::chr1:240448610..240448624,+#_dc28cd5b99edadcd55d944507297a01dp@chr1:240448610..240448624, +
1.33e-35FFCP PHASE2:Hg19::chr1:240448610..240448624,+#_dc28cd5b99edadcd55d944507297a01dp@chr1:240448610..240448624, +
1.4e-35FFCP PHASE1:Hg19::chr12:88813089..88813098,-#_ef11bf1f117cfe02e0a394cda0aa13c0p@chr12:88813089..88813098, -
1.4e-35FFCP PHASE2:Hg19::chr12:88813089..88813098,-#_ef11bf1f117cfe02e0a394cda0aa13c0p@chr12:88813089..88813098, -
1.9e-35FFCP PHASE2:Hg19::chr18:52969674..52969685,-#_e9de429d3eed22246d7f7f87f9c15599p24@TCF4
1.9e-35FFCP PHASE1:Hg19::chr18:52969674..52969685,-#_e9de429d3eed22246d7f7f87f9c15599p24@TCF4
2.59e-35FFCP PHASE2:Hg19::chr11:26210383..26210402,+#_141453d787595b7ce6c7325fda9d87f6p2@ENST00000531798
2.59e-35FFCP PHASE1:Hg19::chr11:26210383..26210402,+#_141453d787595b7ce6c7325fda9d87f6p2@ENST00000531798
4.99e-35FFCP PHASE2:Hg19::chr9:81628797..81628811,+#_84d4b40b97b8da6eced55622a6d00dfbp@chr9:81628797..81628811, +
4.99e-35FFCP PHASE1:Hg19::chr9:81628797..81628811,+#_84d4b40b97b8da6eced55622a6d00dfbp@chr9:81628797..81628811, +
5.16e-35FFCP PHASE1:Hg19::chr15:33180439..33180446,-#_a45b57ab60b5c7de72ef440967eff552p@chr15:33180439..33180446, -
5.16e-35FFCP PHASE2:Hg19::chr15:33180439..33180446,-#_a45b57ab60b5c7de72ef440967eff552p@chr15:33180439..33180446, -
8.83e-35FFCP PHASE1:Hg19::chr4:127876558..127876592,-#_4608ae14af56fa251a349b97372df9f5p1@ENST00000515428
8.83e-35FFCP PHASE2:Hg19::chr4:127876558..127876592,-#_4608ae14af56fa251a349b97372df9f5p1@ENST00000515428
1.85e-34FFCP PHASE1:Hg19::chr8:19171231..19171238,+#_c7bac506568a3163efbac96c07e72a54p7@SH2D4A
1.85e-34FFCP PHASE2:Hg19::chr8:19171231..19171238,+#_c7bac506568a3163efbac96c07e72a54p7@SH2D4A
2.29e-34FFCP PHASE1:Hg19::chr11:121972578..121972593,-#_401ae3ac1835f350349dc8815c9ee6f9p3@ENST00000530955
2.29e-34FFCP PHASE2:Hg19::chr11:121972578..121972593,-#_401ae3ac1835f350349dc8815c9ee6f9p3@ENST00000530955

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